BAC Information

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BAC

Clone NameB6Ng01-178K18
Chromosome18 (Build37)
Map Location 16,578,930 - 16,579,982
singlet/doubletsinglet
Overlap genenone
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178K18.bB6Ng01-178K18.g
ACCGA005592GA005593
length1,1831,056
definitionB6Ng01-178K18.b B6Ng01-178K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttacctctgagccccattttttaatgaggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagttcctttcccaatctgttggtggcct
ttttatcttattgatggtgtcttttgacttacagaagctttgcaatttta
tgaggaaccatttgtctacttttgatcttacagcacaaaccattgctgtt
ttattcaggaatttttccaccatgcccatatcttccaggcttttccgcac
tttctcctctataagtttcactgtctctggttttatgtggcactccttgg
tccacttagatttgaccttagtacaaggagataggaatgaatcaattcgc
attcttctacataataaccaccatttgtgccaaccccatttgttgaaaat
gctatctttttccactggatggttttagctcccttgtcaaagatcaagtc
accataggtgtgtgggttcatttctgggtcttcaattctattcaattggt
ctacttgtctgtcattataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtcagggatggtgattccaccagaggttctttt
atccttgagaagagtttttgttatcctaggttttttgttattccagatga
atttgcagattgccctttctgattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcctgccaatccatgagcatgagagatctttccatcttc
tgagatcttctttctttctttagatacttgacattcttatcatatagaga
tctttcacttccttagttagagtcaaaccaaggtatttatattattgtga
ctattgagaagggtgttgtttctcctaatttctttctcagccctgtttat
cctttgtgtagaagaaaggccatgaacttgcttgagttaattttaataat
ccagctactttcattgagctctctttatccagattaaggaagttctctct
ggtggattttagatcacttatatatttaccctattatatcatcctgcaaa
ggtgatattttggactcttcattcaactgcgat

gaattcagctcaaatgtccaaccctggcacattccccaaccctgtgaagg
gtgggtccattctcccggggccatagtctataactctaatagagaacgaa
ttcttttctgataaatataatgcattgttctttgttctatgggatatgag
gcttctgtaccatctcacatttaattgttgtgaaacttatctcaagtatt
ctccatatctaattttcacattttctcccacaaagtatctgtttcatgta
gatgcttttgaacatgttatttttccctgtttatatccaggaatagttag
tttcatatttattggctcatcaatgttacatcgttggagcatcacaaggg
cagtattctgccaaagtgagaaactggaggttgggggatgtaacggtgta
acacttacccttgtttgtgttgatgcctgtgaagttctgatggaagctgt
aaggaagggcacacccagtggaaggagtgatgtggataaaacagcttact
tgaaaagattctgaagatgatgggtttcctgtgattttctccaattatag
taaatttacccttggttaaataacacagtgcattctgagaagaatcattg
taaaagacaaatccaaacttggcacactacatgctttgcttcccatcata
tagtacagaagaaaacatgggatttgtggcatctgtttaataaatgaggg
gtgattgaagactctggaagactgacctggatggttttagactgggaaag
aagggccaccttgcgagggaggagaaaagaactgcttcttgctggagatg
ccagccctgaaatatggctgagttgataaaatgcagccaggataacaaaa
tcagagctgaccaatgtaaggtatgtaagaacaccataaatcatggcatg
aatgtctttagaagacatagtgtgaattcatttttcttccagcatacctt
accatttcgttgcagttcactcacatagctctcatgctgattaacctctg
acacatcatgtaggtggggattgaaaacctatgtggccatcttctcacag
aacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16578930_16579982
seq2: B6Ng01-178K18.g_67_1122 (reverse)

seq1  TTTGTTCTGTGAGAAGATGG-CACAATAGTTTTCAATCCCCA-CTACATG  48
      |||||||||||||||||||| ||||   |||||||||||||| |||||||
seq2  TTTGTTCTGTGAGAAGATGGCCACATAGGTTTTCAATCCCCACCTACATG  50

seq1  ATGTGTCAGAGGTTAATCAGCATGAGAGCTATGTGAGTGAACTGCAACG-  97
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTGTCAGAGGTTAATCAGCATGAGAGCTATGTGAGTGAACTGCAACGA  100

seq1  AATGGTAAGGTATGCTTGGAAGAAAAATG-ATTCACACTATGTCTTCTAA  146
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  AATGGTAAGGTATGC-TGGAAGAAAAATGAATTCACACTATGTCTTCTAA  149

seq1  AGACATTCATGCCATGATTTATGGTGTTCTTACATACCTTACATTGGTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCATGCCATGATTTATGGTGTTCTTACATACCTTACATTGGTCA  199

seq1  GCTCTGATTTTGTTATCCTGGCTGCATTTTATCAACTCAGCCATATTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTTTGTTATCCTGGCTGCATTTTATCAACTCAGCCATATTTCA  249

seq1  GGGCTGGCATCTCCAGCAAGAAGCAGTTCTTTTCTCCTCCCTCGCAAGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCATCTCCAGCAAGAAGCAGTTCTTTTCTCCTCCCTCGCAAGGT  299

seq1  GGCCCTTCTTTCCCAGTCTAAAACCATCCAGGTCAGTCTTCCAGAGTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTCTTTCCCAGTCTAAAACCATCCAGGTCAGTCTTCCAGAGTCTT  349

seq1  CAATCACCCCTCATTTATTAAACAGATGCCACAAATCCCATGTTTTCTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCCCTCATTTATTAAACAGATGCCACAAATCCCATGTTTTCTTC  399

seq1  TGTACTATATGATGGGAAGCAAAGCATGTAGTGTGCCAAGTTTGGATTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATATGATGGGAAGCAAAGCATGTAGTGTGCCAAGTTTGGATTTG  449

seq1  TCTTTTACAATGATTCTTCTCAGAATGCACTGTGTTATTTAACCAAGGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACAATGATTCTTCTCAGAATGCACTGTGTTATTTAACCAAGGGT  499

seq1  AAATTTACTATAATTGGAGAAAATCACAGGAAACCCATCATCTTCAGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACTATAATTGGAGAAAATCACAGGAAACCCATCATCTTCAGAAT  549

seq1  CTTTTCAAGTAAGCTGTTTTATCCACATCACTCCTTCCACTGGGTGTGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAGTAAGCTGTTTTATCCACATCACTCCTTCCACTGGGTGTGCC  599

seq1  CTTCCTTACAGCTTCCATCAGAACTTCACAGGCATCAACACAAACAAGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTACAGCTTCCATCAGAACTTCACAGGCATCAACACAAACAAGGG  649

seq1  TAAGTGTTACACCGTTACATCCCCCAACCTCCAGTTTCTCACTTTGGCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTACACCGTTACATCCCCCAACCTCCAGTTTCTCACTTTGGCAG  699

seq1  AATACTGCCCTTGTGATGCTCCAACGATGTAACATTGATGAGCCAATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCCCTTGTGATGCTCCAACGATGTAACATTGATGAGCCAATAAA  749

seq1  TATGAAACTAACTATTCCTGGATATAAACAGGGAAAAATAACATGTTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACTAACTATTCCTGGATATAAACAGGGAAAAATAACATGTTCAA  799

seq1  AAGCATCTACATGAAACAGATACTTTGTGGGAGAAAATGTGAAAATTAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTACATGAAACAGATACTTTGTGGGAGAAAATGTGAAAATTAGA  849

seq1  TATGGAGAATACTTGAGATAAGTTTCACAACAATTAAATGTGAGATGGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAATACTTGAGATAAGTTTCACAACAATTAAATGTGAGATGGTA  899

seq1  CAGAAGCCTCATATCCCATAGAACAAAGAACAATGCATTATATTTATCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCTCATATCCCATAGAACAAAGAACAATGCATTATATTTATCAG  949

seq1  AAAAGAATTCGTTCTCTATTAGAGTTATAGACTATGGCCCCGGGAGAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTCGTTCTCTATTAGAGTTATAGACTATGGCCCCGGGAGAATG  999

seq1  GACCCACCCTTCACAGGGTTGGGGAATGTGCCAGGGTTGGACATTTGAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCCTTCACAGGGTTGGGGAATGTGCCAGGGTTGGACATTTGAGC  1049

seq1  TGAATTC  1053
      |||||||
seq2  TGAATTC  1056


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