BAC Information

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BAC

Clone NameB6Ng01-178N23
Chromosome10 (Build37)18 (Build37)
Map Location 44,708,120 - 44,708,81265,464,211 - 65,464,943
singlet/doubletsingletsinglet
Overlap geneEG215974
Upstream geneAim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529
Downstream genePrep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178N23.bB6Ng01-178N23.g
ACCGA005741GA005742
length181736
definitionB6Ng01-178N23.b B6Ng01-178N23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,708,120 - 44,708,812)(65,464,211 - 65,464,943)
sequence
gaattcatactgggtgtggtggcacgtggcagcactggggaggcagaggc
aggctttccatgagttcaacgcattcctggtttacatgtgagttctaggc
cagccgaggctacgtagcaaaatcctgtctcaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaggagggagagagaggggga
gaattccaagtgtatgcagcatgagccaaacacaagatggtggtgacaga
agcctaggagaagctgggcaaaggggaacggatgagaccgaggtcatttc
ccccctgtctcctctttctagctgtctcacaggagtgacacatacatgtg
tcaaggctgaaaccaacaactccacaggccacatttatggcggatctgag
cccagaacccgtcaaagtgtaattcctatgaagacagaaaagggaactat
cgagagcaagtgtgggaaccatgtgcgctcttcagatgatctcacaaaca
caccttgtacttcatctcccaaaggaaatgtcacacgcttgtcaataagc
catggcctggaggaactgaaatcagagaagctgcagattgcggaaaccaa
acccctaaactcatctgactccccaacaatgaccttagctctcatttcag
gagaatgtgagtcagagaaagaccccaaaagcttgttacgtagggaccca
tgtccaaagggctccaccctggatagcgggaagaagtccagagaccaaca
gcagaagcctgtggcagcccaggtcagcaaggcacctggggaccaatcag
caatggctgggtcagaggagggcaagaagaagcaagaggcttcggggagt
gggacacttgactgcagggataaagaagaaaattctatccaggggtcgca
gcccctgagactgaggctggaagaaaagaaaattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_44708120_44708812
seq2: B6Ng01-178N23.b_58_223

seq1  GTGGTGGCACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAA  50
      ||||||||||          |  ||||||| |||||||||||||||||  
seq2  GTGGTGGCAC---------GTGGCAGCACTGGGGAGGCAGAGGCAGGC--  39

seq1  ATTTC--TGAGTTCGAGGCCAGTCTGGTCTACAGAGTGAATTCCAGGACA  98
       ||||  ||||||| | ||    ||||| ||||  |||| ||| ||| ||
seq2  -TTTCCATGAGTTCAACGCATTCCTGGTTTACA-TGTGAGTTCTAGGCCA  87

seq1  GCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAAAAAAAAAA  148
      |||  ||||||  ||  ||| ||||||||||||||| |||||||||||||
seq2  GCCGAGGCTACGTAGCAAAATCCTGTCTCAAAAAAAAAAAAAAAAAAAAA  137

seq1  AACAAAAAAAAAACAAAAAAAAAAAACAAAAAACAAAAAACAAAACACCA  198
      || |||||||  |   | | | |     |                     
seq2  AAAAAAAAAAGGAGGGAGAGAGAGGGGGA---------------------  166

seq1  AAAACAAACAAAAAAACAACCAGATTCTACTTCAAGCCAGTGATCCTGAG  248
                                                        
seq2  --------------------------------------------------  166

seq1  CTTTCAGGAGAACTTCTGACCATCTCTTCTGTTTTCATGACCTGTTGGAC  298
                                                        
seq2  --------------------------------------------------  166

seq1  TATGGAAAACTTAAATCATGAAAAATAACATATAAGGAGGGAGAGAGAGA  348
                                                        
seq2  --------------------------------------------------  166

seq1  GAGAGAGCACGCACATGCGCAGGGAAGTTTGAAAACACCACAAGATAAAA  398
                                                        
seq2  --------------------------------------------------  166

seq1  GGAACAATAAGGCCACCGTAATGACAGGGATGAAGCAGAGTCATGCGACA  448
                                                        
seq2  --------------------------------------------------  166

seq1  GAAGAGAACCTGCACATCTGTGCTTTTTCTTCTTTATAACTTCGTCAAGA  498
                                                        
seq2  --------------------------------------------------  166

seq1  AAACAGGAAAAACAGTGTGCACAAACCACAAGTGGAAAATTTTGTTTTTC  548
                                                        
seq2  --------------------------------------------------  166

seq1  TGTTCCAATTTTGGTAGTAGAATCCAGTAGGAAGAAAAGCGACCACTCTG  598
                                                        
seq2  --------------------------------------------------  166

seq1  ATTGTCTTCTATAGGCTTGCAATATACAATTCATCATTGTCTCGTGCATC  648
                                                        
seq2  --------------------------------------------------  166

seq1  CTATGATTGTGAGTTAGTCGTTATTACTCACTGTGATGGAGGGGA  693
                                                   
seq2  ---------------------------------------------  166

seq1: chr18_65464211_65464943
seq2: B6Ng01-178N23.g_68_802 (reverse)

seq1  GAATTTTCCTTTTCCTCCAGCCTCAGTCTCA-GGGCTGCGA-CCCTGGAT  48
      ||||||| |||||| |||||||||||||||| ||||||||| ||||||||
seq2  GAATTTT-CTTTTCTTCCAGCCTCAGTCTCAGGGGCTGCGACCCCTGGAT  49

seq1  AGAATTTTCTTCTTTATCCCTGCAGTCAAGTGT-CCACTCCCCGAAGCCT  97
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGAATTTTCTTCTTTATCCCTGCAGTCAAGTGTCCCACTCCCCGAAGCCT  99

seq1  CTTGCTTCTTCTTGCCCTCCTCTGACCCAGCCATTGCTGATTGGTCCCCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTTCTTGCCCTCCTCTGACCCAGCCATTGCTGATTGGTCCCCA  149

seq1  GGTGCCTTGCTGACCTGGGCTGCCACAGGCTTCTGCTGTTGGTCTCTGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTGCTGACCTGGGCTGCCACAGGCTTCTGCTGTTGGTCTCTGGA  199

seq1  CTTCTTCCCGCTATCCAGGGTGGAGCCCTTTGGACATGGGTCCCTACGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCCGCTATCCAGGGTGGAGCCCTTTGGACATGGGTCCCTACGTA  249

seq1  ACAAGCTTTTGGGGTCTTTCTCTGACTCACATTCTCCTGAAATGAGAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTTGGGGTCTTTCTCTGACTCACATTCTCCTGAAATGAGAGCT  299

seq1  AAGGTCATTGTTGGGGAGTCAGATGAGTTTAGGGGTTTGGTTTCCGCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATTGTTGGGGAGTCAGATGAGTTTAGGGGTTTGGTTTCCGCAAT  349

seq1  CTGCAGCTTCTCTGATTTCAGTTCCTCCAGGCCATGGCTTATTGACAAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTTCTCTGATTTCAGTTCCTCCAGGCCATGGCTTATTGACAAGC  399

seq1  GTGTGACATTTCCTTTGGGAGATGAAGTACAAGGTGTGTTTGTGAGATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACATTTCCTTTGGGAGATGAAGTACAAGGTGTGTTTGTGAGATCA  449

seq1  TCTGAAGAGCGCACATGGTTCCCACACTTGCTCTCGATAGTTCCCTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGCGCACATGGTTCCCACACTTGCTCTCGATAGTTCCCTTTTC  499

seq1  TGTCTTCATAGGAATTACACTTTGACGGGTTCTGGGCTCAGATCCGCCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATAGGAATTACACTTTGACGGGTTCTGGGCTCAGATCCGCCAT  549

seq1  AAATGTGGCCTGTGGAGTTGTTGGTTTCAGCCTTGACACATGTATGTGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGCCTGTGGAGTTGTTGGTTTCAGCCTTGACACATGTATGTGTC  599

seq1  ACTCCTGTGAGACAGCTAGAAAGAGGAGACAGGGGGGAAATGACCTCGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGAGACAGCTAGAAAGAGGAGACAGGGGGGAAATGACCTCGGT  649

seq1  CTCATCCGTTCCCCTTTGCCCAGCTTCTCCTAGGCTTCTGTCACCACCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCGTTCCCCTTTGCCCAGCTTCTCCTAGGCTTCTGTCACCACCAT  699

seq1  CTTGTGTTTGGCTCATGCTGCATACACTTGGAATTC  733
      ||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTTGGCTCATGCTGCATACACTTGGAATTC  735