BAC Information

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BAC

Clone NameB6Ng01-179F01
Chromosome18 (Build37)
Map Location 73,566,085 - 73,567,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629684, LOC100043411, LOC100042955
Downstream geneRkhd2, Smad4, Elac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179F01.bB6Ng01-179F01.g
ACCGA006069GA006070
length1,0271,073
definitionB6Ng01-179F01.b B6Ng01-179F01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtacaatccagaaagaccctgaacttacaatgaacccctcc
accccccacccaactctgttgcttattttattttattttattttatttta
ttttatttttgagacagggtctcattatgtagccaagtttaccctgaaac
tctctaagtagcccaggatggcctttcattgacaatcttcctgccgctca
tgggctaggggtataagcacaagtcaacatttggcattactgtctgttta
aaaatattatttatttctcaagctttggtttcataggtacccctctcttc
cagtgtccatacttagatttatggtgctagaaggaccttagagatcacgc
ctctctgcaataggagtgcctgccctacattgctagggcagggactggtg
gttgcagccagagcccactgctccggaggtcagctccctcttcccctctg
ccatcctgactctgcactcctggcaggttcccaatttccagcttcgctgg
acaccagtgtgcccactggcctgcttctctctgtcattagaactcttgca
actttggatcctgggtcttgcccgtgctttgatgactaaggacggaacaa
caaatcatcctacaatcccaccatgcgataacttcacatctcagagttca
ccatcagcaatactcttcaggcccaaattcaaaggcttcctctaccttta
aaaacttttttttcatttacttttaattatgtgtatgcatgtgtaaggga
ggaaagggcatgtgaattcacgtgctcatggaggccagaagagggcattg
gatcccctacagctagaatggtttgtgagttctcatgatgtggttgctgg
gaactagactctggtcctcttggaagagcagtcagtgactttaatctgtg
agccatctctccagtccccctttactaaagcccaacttaatttcttctgc
tttcttagaaatgggggagtcctgccctacctataccacgttcactagag
cgaagggaaccctattgctcacctatc
gaattcttcatctgcttcagagctactaagagctggctccccgagcccat
ccagcgatgagcacaggctccttttcctagagacctccgctaattgatct
ttcttcttttccctttttcctctttttcttctaatctctctccaggtatt
cctacctaaccttaacttttcctcaggttcaagacccgtggaaaggcctg
tacgcttattttgtgtaccatattttctctttgctcctactctctctccc
cgctttacttctgatagcttgtcctgaatttcctctagaattttcagccc
tatcttaatcacttgataacatgtgaaaaggaacaaaagggctcctaaca
ccagaaaaaattcaaggccaaacatattccactttacttctgatagactg
tcttgaatttccttagaaagttcaagatcagacttacctcgtaaagctgt
actcactggtactctcgttccccagctgaaaagttctgaattcatacagt
tgaatccttcttaacagtctgctttacgggaacctttattaccgcgaccc
gcagttctggttctggaatgagggatcttccttgcgccagtcccgagttt
tttctcgtcccggaattcggcaccaattgttattagacgcgttctcacgc
ccggccaggaagaacaccacagaccagaatcttctgcggcaaaactttat
tgcttacatcttcaggagcaagagtgtaagaagcaagagagcgagaaaac
gaaaccccgtccctcttaaggagaattctccttcgcctaggacgtgtcac
tccctgattggcttgcagcccatcggccgagttgacgtcacggggaaggc
agagcacatgggagtgaagaaaccaccctcggcacatgcgcagattattt
gtttaccacttagaacacagctgtcagccgccatcttgtaacggcgaatg
tgggcgcggctctccaacagtagagggtgtgcctagcctcacagaacttg
atctgccagaagtggggggattccccagggccaccacctgctcagagaca
gggtaggagaggatgaagattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_73566085_73567100
seq2: B6Ng01-179F01.b_43_1069 (reverse)

seq1  GCTAGGTGAGC-ATA-GGTTCCCTTCGCTCTAGTGAACGTGGTATAGGTA  48
      | ||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GATAGGTGAGCAATAGGGTTCCCTTCGCTCTAGTGAACGTGGTATAGGTA  50

seq1  GGGCA-GACTCCCC--ATTCTTAGGAAGCAG-AGAAATTA--GTGGGCTT  92
      ||||| ||||||||   |||| || |||||| ||||||||   |||||||
seq2  GGGCAGGACTCCCCCATTTCTAAGAAAGCAGAAGAAATTAAGTTGGGCTT  100

seq1  TAGTAAAGGGGGACTGGAGAGATGGCTCACAGGTTAAAGTCACTGACTGC  142
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGTAAAGGGGGACTGGAGAGATGGCTCACAGATTAAAGTCACTGACTGC  150

seq1  TCTTCC-AGAGGACCAGAGTCTAGTTCCCAGCACCCACATCATGAG-ACT  190
      |||||| |||||||||||||||||||||||||| |||||||||||| |||
seq2  TCTTCCAAGAGGACCAGAGTCTAGTTCCCAGCAACCACATCATGAGAACT  200

seq1  CAC-AACCATTCTAGCTGTAGGGGATCCAATGCCCTCTTCTGGCCTCCAT  239
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACCATTCTAGCTGTAGGGGATCCAATGCCCTCTTCTGGCCTCCAT  250

seq1  GAGCACGTGAATTCACATGCCCTTTCCTCCCTTACACATGCATACACATA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGTGAATTCACATGCCCTTTCCTCCCTTACACATGCATACACATA  300

seq1  ATTAAAAGTAAATGAAAAAAAAGTTTTTAAAGGTAGAGGAAGCCTTTGAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGTAAATGAAAAAAAAGTTTTTAAAGGTAGAGGAAGCCTTTGAA  350

seq1  TTTGGGCCTGAAGAGTATTGCTGATGGTGAACTCTGAGATGTGAAGTTAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCCTGAAGAGTATTGCTGATGGTGAACTCTGAGATGTGAAGTTAT  400

seq1  CGCATGGTGGGATTGTAGGATGATTTGTTGTTCCGTCCTTAGTCATCAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGGTGGGATTGTAGGATGATTTGTTGTTCCGTCCTTAGTCATCAAA  450

seq1  GCACGGGCAAGACCCAGGATCCAAAGTTGCAAGAGTTCTAATGACAGAGA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGCAAGACCCAGGATCCAAAGTTGCAAGAGTTCTAATGACAGAGA  500

seq1  GAAGCAGGCCAGTGGGCACACTGGTGTCCAGCGAAGCTGGAAATTGGGAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGCCAGTGGGCACACTGGTGTCCAGCGAAGCTGGAAATTGGGAA  550

seq1  CCTGCCAGGAGTGCAGAGTCAGGATGGCAGAGGGGAAGAGGGAGCTGACC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGGAGTGCAGAGTCAGGATGGCAGAGGGGAAGAGGGAGCTGACC  600

seq1  TCCGGAGCAGTGGGCTCTGGCTGCAACCACCAGTCCCTGCCCTAGCAATG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAGCAGTGGGCTCTGGCTGCAACCACCAGTCCCTGCCCTAGCAATG  650

seq1  TAGGGCAGGCACTCCTATTGCAGAGAGGCGTGATCTCTAAGGTCCTTCTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGGCACTCCTATTGCAGAGAGGCGTGATCTCTAAGGTCCTTCTA  700

seq1  GCACCATAAATCTAAGTATGGACACTGGAAGAGAGGGGTACCTATGAAAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATAAATCTAAGTATGGACACTGGAAGAGAGGGGTACCTATGAAAC  750

seq1  CAAAGCTTGAGAAATAAATAATATTTTTAAACAGACAGTAATGCCAAATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGAGAAATAAATAATATTTTTAAACAGACAGTAATGCCAAATG  800

seq1  TTGACTTGTGCTTATACCCCTAGCCCATGAGCGGCAGGAAGATTGTCAAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGTGCTTATACCCCTAGCCCATGAGCGGCAGGAAGATTGTCAAT  850

seq1  GAAAGGCCATCCTGGGCTACTTAGAGAGTTTCAGGGTAAACTTGGCTACA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCATCCTGGGCTACTTAGAGAGTTTCAGGGTAAACTTGGCTACA  900

seq1  TAATGAGACCCTGTCTCAAAAATAAAATAAAATAAAATAAAATAAAATAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGACCCTGTCTCAAAAATAAAATAAAATAAAATAAAATAAAATAA  950

seq1  AATAAGCAACAGAGTTGGGTGGGGGGTGGAGGGGGTCATTGTAAGTTCAG  989
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAAGCAACAGAGTTGGGTGGGGGGTGGAGGGGTTCATTGTAAGTTCAG  1000

seq1  GGTCTTTCTGGATTGTACAATGAATTC  1016
      |||||||||||||||||||||||||||
seq2  GGTCTTTCTGGATTGTACAATGAATTC  1027