BAC Information

Click to search

BAC

Clone NameB6Ng01-179G11
Chromosome18 (Build37)
Map Location 30,391,364 - 30,561,650
singlet/doubletdoublet
Overlap genePik3c3
Upstream geneLOC100040930, 4930578E11Rik, LOC666073
Downstream geneLOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2, EG666130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179G11.bB6Ng01-179G11.g
ACCGA006134GA006135
length876339
definitionB6Ng01-179G11.b B6Ng01-179G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,391,364 - 30,392,239)(30,561,314 - 30,561,650)
sequence
gaattcttggagttctgtggggggaggggtgtctcttgtgtccatccctc
caaggcctcattattgacccatgagcttttcttaatcacttgtttgcttt
atgatttggaagcaaacacacagttatgcctgagctgatttgagattcca
acttttcattttgtgtagctgcgttaacacatgaaacctttcccagtact
catgacaaaagtcaactctttcttcctttgttccaggggctcccccttcc
ccaggtgccccccctccctacaactagaagtcattttctgtagaaatttt
ctcccaccttccattactggaacagtctaattactgcatatcaaagagag
agacacacgcagctgtctggcttcaccacttccacacaatggtgcaaaaa
cgcagctcaacagtccagtgaactgtcagctacaagagtaattggaactc
aggggtccgcctccagtcctggtagtgggggccatttttgtgttttgtta
acatggaaatcaccctggggagatgggagtttggagtctgtaaagattct
ttgtaattttttttttaagaagctgccatactcttgcccatcctaagaca
ttttttttcaattacacattaaatgacttggcatttgaggtaatgttatc
tagtgctaattcacctgttaggaaattgcctctcttcagaacctggggtt
aatagagttgcagaagaccattcttatcaaggggtgggagaaaggcgatt
aatttacactataaattaaaacatagaaaatggaaggaaaaatagaccga
gtgcttggccttgctccggaaaagctattatgttttgttggattttttct
gtttttatttgtttattttatccatg
cctgttgcctggatcatccacaagtgtcaagctgtcacctgcaccaaccc
ttgaaccatgtttggctctttccccatccattgtttccacagataataca
ggtgttgttatccctggagagtttggccactaaggaaaagtcttttagtt
ctccaaactgtatctttcaaagggccaaagagaggttgataaaacctaca
actgatgatgtgaacttgtgtttctctctctctctctctctctctctctc
tctctctctctctctctctctctctctccctctctctctctctctccctc
attggggttttcttcctgttatctctgtccaaatgacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_30391364_30392239
seq2: B6Ng01-179G11.b_43_918

seq1  GAATTCTTGGAGTTCTGTGGGGGGAGGGGTGTCTCTTGTGTCCATCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGTTCTGTGGGGGGAGGGGTGTCTCTTGTGTCCATCCCTC  50

seq1  CAAGGCCTCATTATTGACCCATGAGCTTTTCTTAATCACTTGTTTGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTCATTATTGACCCATGAGCTTTTCTTAATCACTTGTTTGCTTT  100

seq1  ATGATTTGGAAGCAAACACACAGTTATGCCTGAGCTGATTTGAGATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTGGAAGCAAACACACAGTTATGCCTGAGCTGATTTGAGATTCCA  150

seq1  ACTTTTCATTTTGTGTAGCTGCGTTAACACATGAAACCTTTCCCAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATTTTGTGTAGCTGCGTTAACACATGAAACCTTTCCCAGTACT  200

seq1  CATGACAAAAGTCAACTCTTTCTTCCTTTGTTCCAGGGGCTCCCCCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAAAGTCAACTCTTTCTTCCTTTGTTCCAGGGGCTCCCCCTTCC  250

seq1  CCAGGTGCCCCCCCTCCCTACAACTAGAAGTCATTTTCTGTAGAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCCCCCCCTCCCTACAACTAGAAGTCATTTTCTGTAGAAATTTT  300

seq1  CTCCCACCTTCCATTACTGGAACAGTCTAATTACTGCATATCAAAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTTCCATTACTGGAACAGTCTAATTACTGCATATCAAAGAGAG  350

seq1  AGACACACGCAGCTGTCTGGCTTCACCACTTCCACACAATGGTGCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACGCAGCTGTCTGGCTTCACCACTTCCACACAATGGTGCAAAAA  400

seq1  CGCAGCTCAACAGTCCAGTGAACTGTCAGCTACAAGAGTAATTGGAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTCAACAGTCCAGTGAACTGTCAGCTACAAGAGTAATTGGAACTC  450

seq1  AGGGGTCCGCCTCCAGTCCTGGTAGTGGGGGCCATTTTTGTGTTTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTCCGCCTCCAGTCCTGGTAGTGGGGGCCATTTTTGTGTTTTGTTA  500

seq1  ACATGGAAATCACCCTGGGGAGATGGGAGTTTGGAGTCTGTAAAGATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAATCACCCTGGGGAGATGGGAGTTTGGAGTCTGTAAAGATTCT  550

seq1  TTGTAATTTTTTTTTTAAGAAGCTGCCATACTCTTGCCCATCCTAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTTTTTTTTAAGAAGCTGCCATACTCTTGCCCATCCTAAGACA  600

seq1  TTTTTTTTCAATTACACATTAAATGACTTGGCATTTGAGGTAATGTTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAATTACACATTAAATGACTTGGCATTTGAGGTAATGTTATC  650

seq1  TAGTGCTAATTCACCTGTTAGGAAATTGCCTCTCTTCAGAACCTGGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTAATTCACCTGTTAGGAAATTGCCTCTCTTCAGAACCTGGGGTT  700

seq1  AATAGAG-TGCAGAAGACCATTCTTATCAAGGGGTGGGAGAAAGGCGATT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTTGCAGAAGACCATTCTTATCAAGGGGTGGGAGAAAGGCGATT  750

seq1  AATTTACACTATAAATTAAAACATAGAAAATGGAAGGAAAAATAGACCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACACTATAAATTAAAACATAGAAAATGGAAGGAAAAATAGACCGA  800

seq1  GTGC-TGGCCTTGCTCCGGAAAAGCTATTATGTTTTGTTGGATTTTTTTC  848
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGCTTGGCCTTGCTCCGGAAAAGCTATTATGTTTTGTTGGA-TTTTTTC  849

seq1  TGTTTTTAATTTGTTATTTTTATCCATG  876
      ||||||| |||||||  |||||||||||
seq2  TGTTTTT-ATTTGTTTATTTTATCCATG  876

seq1: chr18_30561314_30561650
seq2: B6Ng01-179G11.g_75_413 (reverse)

seq1  CTGTCATTTGGACAGAGCTGACAGGAAGAAAACCCCAATGAGGGAGAGAG  50
      ||||||||||||||||| | ||||||||||||||||||||||||||||||
seq2  CTGTCATTTGGACAGAGATAACAGGAAGAAAACCCCAATGAGGGAGAGAG  50

seq1  AGAGAGAGAGG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  98
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGAGAGAGAGAAACACAAGTTCACATCATCAGTTGTAGGTTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAACACAAGTTCACATCATCAGTTGTAGGTTTTA  150

seq1  TCAACCTCTCTTTGGCCCTTTGAAAGATACAGTTTGGAGAACTAAAAGAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCTCTTTGGCCCTTTGAAAGATACAGTTTGGAGAACTAAAAGAC  200

seq1  TTTTCCTTAGTGGCCAAACTCTCCAGGGATAACAACACCTGTATTATCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTAGTGGCCAAACTCTCCAGGGATAACAACACCTGTATTATCTG  250

seq1  TGGAAACAATGGATGGGGAAAGAGCCAAACATGGTTCAAGGGTTGGTGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAATGGATGGGGAAAGAGCCAAACATGGTTCAAGGGTTGGTGCA  300

seq1  GGTGACAGCTTGACACTTGTGGATGATCCAGGCAACAGG  337
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCTTGACACTTGTGGATGATCCAGGCAACAGG  339