BAC Information

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BAC

Clone NameB6Ng01-181E19
Chromosome18 (Build37)
Map Location 51,643,685 - 51,644,820
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181E19.bB6Ng01-181E19.g
ACCGA007498GA007499
length1,2081,123
definitionB6Ng01-181E19.b B6Ng01-181E19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagcccatttcttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatatattggatattagtcc
cctatctgatttaggataggtaaatatcctttaccaatctgttggtggcc
ttttgtattattgacggtgtcttttgccttgcaaagctttgcagtttcat
gaggtctcatttgtcaattctcgatcttacagcacaagccgttgctgttc
tattcaggaatttttcctctgtgccaatatcttcgaggcttctccccact
ttctcctctaaaagtttcagtgtctctggttttatgtggagctccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatgataaccactagttgtgccagcaccatttgttgaaaatg
ctgtctttttttccactggatggttttagctcccttgtcaaagatcaggt
gaccataggtgtgtgggttcatttctgggtcttcaaatctactccattgg
tctagttttctgtagttataccagtaccatgccattttttttaaatcaca
attgctctgtagtaaagctttaggtcaggcatgacctaaaagaaccacca
gaggttcttttatccttgagaaaattttttgctatcctaggttttttgtt
attctagatgaatttgcagattgttctttctaattctttgaagaattgag
ttagaattttgatggggattgcattgaatctgtagattgcttttggcaag
atagccatttttacaatgttggtcctgcaaatccatgagcatgggagatc
ttttcatcttctgagattttctttaatttctttcttcagagacttgaagt
tcttatcatacagatctttcacttccttagttagagtcatgccaaggtat
tttataatatttgtgactattgagaaggtgtgttccctaatttctttctc
agcttgttattcttgtgtagagaaagggccatgactgttaattaatatca
gctatttcactgagctgttatcagttaggagtcctggttgaatttcaggg
tcacttaatatactatctaatacatctgccaaggtgtacttggaccctct
ctcaatgatccctgattcctgtagtcgagttgcctctcggctagggcaga
tctacgac

gaattcaaatccaggcagcacaatgtgggaggaacatgacagagaccagc
attccttcatgctctgtagtgacgggcagaaaaggaagcccacagacctg
cctctgccccatagcacaaataggccttagatacacagagctcagcctat
actacacagcagagaatgggaggaggaagacagacaaagacctgcacatt
gccatgcaactcccaacagtcttcccttccagtgcacagcataggcaggc
cattagacacctgcatctcagaagatgttgtccaccagctgcctgaccat
tgggaaccacatgggcaaagaggtgatgccgtattctttgccacctccag
tagccaggaaatctgtccacaagcttttgagcacaagagagttacccact
ggatcatgatcatgggagagctagttctgcccctcaccagctatagcact
ctggggagcaggccttgcacctagcctggacagcacagcaaagctgaccc
tggtggtaggggcacaggtattctggccccaaagatgaactgaccttgcc
acttgacatttatccaccatgatgtgggggcacctccccgcgccccgccc
ccacttgcaccttacaacctgtggcagtaaggagacctgaccccagggtc
aggagagcaagagagctggccctgctcctcatagctgcagcactcaagag
agcagggctatatacctcacctgagcggcacagtaatagtggtggtagta
ggggcacacaggtaacacgggcatgagggtgtaagcctgggagagccact
ggtcccaacactcctctgctacctggcacggatcccttaccgctccatac
aacatgttccatctcctgtggattccacagatcctttcctcctaatatcc
tctctaaagcattgttttgttctagcttcaacaggcaccaccatgataac
cccaggtccttcctgccagggcaaagacgaggctgacagtggtctaacac
ctttccctttctcttttataattccatctacccagtcacatttccagctc
tgtagaacacacacaaacattctgtgtctccttctctttgccccatcttc
agggtcagaagatctacttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51643685_51644820
seq2: B6Ng01-181E19.g_64_1186

seq1  GAATTCAAATCCAGGCAGCACAATGTGGGAGGAACATGACAGAGACCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCAGGCAGCACAATGTGGGAGGAACATGACAGAGACCAGC  50

seq1  ATTCCTTCATGCTCTGTAGTGACGGGCAGAAAAGGAAGCCCACAGACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCATGCTCTGTAGTGACGGGCAGAAAAGGAAGCCCACAGACCTG  100

seq1  CCTCTGCCCCATAGCACAAATAGGCCTTAGATACACAGAGCTCAGCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCCATAGCACAAATAGGCCTTAGATACACAGAGCTCAGCCTAT  150

seq1  ACTACACAGCAGAGAATGGGAGGAGGAAGACAGACAAAGACCTGCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGCAGAGAATGGGAGGAGGAAGACAGACAAAGACCTGCACATT  200

seq1  GCCATGCAACTCCCAACAGTCTTCCCTTCCAGTGCACAGCATAGGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAACTCCCAACAGTCTTCCCTTCCAGTGCACAGCATAGGCAGGC  250

seq1  CATTAGACACCTGCATCTCAGAAGATGTTGTCCACCAGCTGCCTGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACACCTGCATCTCAGAAGATGTTGTCCACCAGCTGCCTGACCAT  300

seq1  TGGGAACCACATGGGCAAAGAGGTGATGCCGTATTCTTTGCCACCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACCACATGGGCAAAGAGGTGATGCCGTATTCTTTGCCACCTCCAG  350

seq1  TAGCCAGGAAATCTGTCCACAAGCTTTTGAGCACAAGAGAGTTACCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGAAATCTGTCCACAAGCTTTTGAGCACAAGAGAGTTACCCACT  400

seq1  GGATCATGATCATGGGAGAGCTAGTTCTGCCCCTCACCAGCTATAGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGATCATGGGAGAGCTAGTTCTGCCCCTCACCAGCTATAGCACT  450

seq1  CTGGGGAGCAGGCCTTGCACCTAGCCTGGACAGCACAGCAAAGCTGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGCAGGCCTTGCACCTAGCCTGGACAGCACAGCAAAGCTGACCC  500

seq1  TGGTGGTAGGGGCACAGGTATTCTGGCCCCAAAGATGAACTGACCTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTAGGGGCACAGGTATTCTGGCCCCAAAGATGAACTGACCTTGCC  550

seq1  ACTTGACATTTATCCACCATGATGTGGGGGCACCTCCCCGCGCCCCGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACATTTATCCACCATGATGTGGGGGCACCTCCCCGCGCCCCGCCC  600

seq1  CCACTTGCACCTTACAACCTGTGGCAGTAAGGAGACCTGACCCCAGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGCACCTTACAACCTGTGGCAGTAAGGAGACCTGACCCCAGGGTC  650

seq1  AGGAGAGCAAGAGAGCTGGCCCTGCTCCTCATAGCTGCAGCACTCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCAAGAGAGCTGGCCCTGCTCCTCATAGCTGCAGCACTCAAGAG  700

seq1  AGCAGGGCTATATACCTCACCTGAGCGGCACAGTAATAGTGGTGGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTATATACCTCACCTGAGCGGCACAGTAATAGTGGTGGTAGTA  750

seq1  GGGGCACACAGGTAACACGGGCATGAGGGTGTAAGCCTGGGAGAGCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACAGGTAACACGGGCATGAGGGTGTAAGCCTGGGAGAGCCACT  800

seq1  GGTCCCAACACTCCTCTGCTACCTGGCACGGATCCCTTACCGCTCCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAACACTCCTCTGCTACCTGGCACGGATCCCTTACCGCTCCATAC  850

seq1  AACATGTTCCATCTCCTGTGGATTCCACAGATCCTTTCCTCCTAATATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCCATCTCCTGTGGATTCCACAGATCCTTTCCTCCTAATATCC  900

seq1  TCTCTAAAGCATTGTTTTGTTCTAGCTTCAACAGGCA-CACCATGATAAC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCTCTAAAGCATTGTTTTGTTCTAGCTTCAACAGGCACCACCATGATAAC  950

seq1  CCCAGGTCCTTTCCTGCCAGGGCAAAGACGAGGCTGACAGTGGTCT-ACA  998
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CCCAGGTCC-TTCCTGCCAGGGCAAAGACGAGGCTGACAGTGGTCTAACA  999

seq1  CCTTTCCCTTTCTTCTTTTAT-ATCCAATCTACCCAGTCACATTTCCAGC  1047
      |||||||||||| |||||||| || | |||||||||||||||||||||||
seq2  CCTTTCCCTTTC-TCTTTTATAATTCCATCTACCCAGTCACATTTCCAGC  1048

seq1  TCTGTAGAAAACAACAACAACAAAACATTCTGTGGTCTCCCTTTCCTCTT  1097
      ||||||||| ||    |||   ||||||||||| ||||||   | |||||
seq2  TCTGTAGAACAC----ACA--CAAACATTCTGT-GTCTCC---TTCTCTT  1088

seq1  TGCCCCAATCTTCAAGGGGTCAGAAAGATCTACTCCAAC  1136
      |||||| |||||||  ||||||| |||||||||| ||||
seq2  TGCCCC-ATCTTCA--GGGTCAG-AAGATCTACTTCAAC  1123


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