BAC Information

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BAC

Clone NameB6Ng01-182H24
Chromosome18 (Build37)
Map Location 37,337,198 - 37,577,105
singlet/doubletdoublet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10
Upstream geneLOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182H24.bB6Ng01-182H24.g
ACCGA008371GA008372
length6811,057
definitionB6Ng01-182H24.b B6Ng01-182H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,337,198 - 37,337,873)(37,576,056 - 37,577,105)
sequence
gaattcaatatcctttaataaacgagtgaatcttccgtttctctatctta
ctagcaagtaagagttaatggggttttcattttgtgccaggccggtgcac
tttaagaagaattacatttaatttcgtaacaactgctattattacccact
ttacaaatgaaaaccgagggccgaagataataaaagatatctggaacacc
ataatttacaccatgtagctaggtatcttggtaacaaagtttcaagcttt
gtagagctcaggaaatacatgctggcatttttttttatggggattttttt
tcctgtgtccactttaagaaccaagaagctgcaggaaaatgaaggatgtg
gttggttggtccccaggtggttgtagtctttcttttgtctttctgatcca
ggacaggcctcaggtttcagactcttcccgagttttgagttttgcgaact
gtgatgtaggtttgtgcaattgatcagcagctgacgggcggtgcttctcc
agtcagtccacaaactcaagaaaagatggaagtaaggaggaggggatgtt
ttccatctatagcccgtttttttgtctgtttgtttgtttttgtttttttc
cagcagttttgagtgtagatttttgttgttgttgttgtttctgttttttc
cctatagtcaagcactgagcatggtatacaa
gaattctattaaacacatgcataatctttaacttcatattttaaaatgaa
tatattttgtgactttagatctagaagtaagagaggaaatatttctcccc
aatgctgggaagattgaacctagagacttttacctatgaggcttttctgt
tggcctctaacagcttgtttgtttgtttgtttgtttgtttgtttttactt
cgggtgggtattttgaatgctagacaccacacctgactagttatttgtca
caaagtgggcaagccattagagttgtttctcatatttaagtcttatcgat
agttttgttagtccttagtttttctcacttttacatcacttaaaatttga
agtcaaataaccaaaactcacatatccaggataagaaatggtcatctatt
tcccttttatatttcattatatccttagggggaaacattatttcaggcaa
agatgcaaatatttaaactccagaggagtgatgcttgagatataagaacc
aaataaagggtaaacaaaattaatgtgtatacattatatccatgtgtgac
aaattcataaggaaacccactggtttgtgcagtgagtgcataaaaagaaa
aaacatttaagtacagatattagattataatctaaacccttcaattgctt
atattctgcaaaaagttcaacaaagcttttcttgcagttatatccacaca
aacttacgtatttaaaaataaaaaaaaaaataaatcacataataagttta
tttaggtcactgaatataagtaattcataattcagttaaattcattacaa
ttcaaccaatttaagaacaaatactttttgtattatgtaataatcagcca
cattgaaaaactaaattgactgaaaattctgtaaagtgccacccaaataa
caaattaggaatttattcaaattatcattgaaaggaactgtctctttgct
ttccattatctacaaacatcatggaagtgaaattttctgagaactatacc
caggatcagatagactgtgaaaattcagaattccccctggggtcttttga
aagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37337198_37337873
seq2: B6Ng01-182H24.b_47_727

seq1  GAATTCAATATCCTTTAATAAACGAGTGAATCTTCCGTTTCTCTATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCCTTTAATAAACGAGTGAATCTTCCGTTTCTCTATCTTA  50

seq1  CTAGCAAGTAAGAGTTAATGGGGTTTTCATTTTGTGCCAGGCCGGTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGTAAGAGTTAATGGGGTTTTCATTTTGTGCCAGGCCGGTGCAC  100

seq1  TTTAAGAAGAATTACATTTAATTTCGTAACAACTGCTATTATTACCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGAATTACATTTAATTTCGTAACAACTGCTATTATTACCCACT  150

seq1  TTACAAATGAAAACCGAGGGCCGAAGATAATAAAAGATATCTGGAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGAAAACCGAGGGCCGAAGATAATAAAAGATATCTGGAACACC  200

seq1  ATAATTTACACCATGTAGCTAGGTATCTTGGTAACAAAGTTTCAAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACACCATGTAGCTAGGTATCTTGGTAACAAAGTTTCAAGCTTT  250

seq1  GTAGAGCTCAGGAAATACATGCTGGCATTTTTTTTTATGGGGATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCTCAGGAAATACATGCTGGCATTTTTTTTTATGGGGATTTTTTT  300

seq1  TCCTGTGTCCACTTTAAGAACCAAGAAGCTGCAGGAAAATGAAGGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCCACTTTAAGAACCAAGAAGCTGCAGGAAAATGAAGGATGTG  350

seq1  GTTGGTTGGTCCCCAGGTGGTTGTAGTCTTTCTTTTGTCTTTCTGATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGGTCCCCAGGTGGTTGTAGTCTTTCTTTTGTCTTTCTGATCCA  400

seq1  GGACAGGCCTCAGGTTTCAGACTCTTCCCGAGTTTTGAGTTTTGCGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCCTCAGGTTTCAGACTCTTCCCGAGTTTTGAGTTTTGCGAACT  450

seq1  GTGATGTAGGTTTGTGCAATTGATCAGCAGCTGACGGGCGGTGCTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAGGTTTGTGCAATTGATCAGCAGCTGACGGGCGGTGCTTCTCC  500

seq1  AGTCAGTCCACAAACTCAAGAAAAGATGGAAGTAAGGAGGAGGGGATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCCACAAACTCAAGAAAAGATGGAAGTAAGGAGGAGGGGATGTT  550

seq1  TTCCATCTATAGCCCGTTTTTTTGTCTGTTTGTTTGTTTTTGTTTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTATAGCCCGTTTTTTTGTCTGTTTGTTTGTTTTTGTTTTTTTC  600

seq1  CAGCAG-TTTGAGTGTAGA-TTTTGTTGTTGTTGTTGTTTCTG-TTTTTC  647
      |||||| |||||||||||| ||||||||||||||||||||||| ||||||
seq2  CAGCAGTTTTGAGTGTAGATTTTTGTTGTTGTTGTTGTTTCTGTTTTTTC  650

seq1  CCTTTAGTCAAGCAC-GAGCAT-GTATACAA  676
      ||| ||||||||||| |||||| ||||||||
seq2  CCTATAGTCAAGCACTGAGCATGGTATACAA  681

seq1: chr18_37576056_37577105
seq2: B6Ng01-182H24.g_68_1124 (reverse)

seq1  TTCACCTTTCAAAAGACCC--AGGGGATTTCTGGAAATTTCAACAGTCTA  48
      |||| ||||||||||||||   ||||| |||||  |||||  ||||||||
seq2  TTCA-CTTTCAAAAGACCCCAGGGGGAATTCTG--AATTTTCACAGTCTA  47

seq1  TCTGATCCTGGGTATTAGTTCTCAGAAAATTTCACTT-CATGTTGTTTTG  97
      |||||||||||||| |||||||||||||||||||||| |||| || ||||
seq2  TCTGATCCTGGGTA-TAGTTCTCAGAAAATTTCACTTCCATGATG-TTTG  95

seq1  TAGAT-ATGGAAAGC-AAGAGACAGTTCC-TTCAATGAT-ATTTG-ATTA  142
      ||||| ||||||||| ||||||||||||| ||||||||| ||||| || |
seq2  TAGATAATGGAAAGCAAAGAGACAGTTCCTTTCAATGATAATTTGAATAA  145

seq1  ATTCCTAATTTGTTATTT-GGTGCAACTTTACAGAATTTTCAGTCAATTT  191
      |||||||||||||||||| ||||  |||||||||||||||||||||||||
seq2  ATTCCTAATTTGTTATTTGGGTGGCACTTTACAGAATTTTCAGTCAATTT  195

seq1  AGTTTTTCAATTGTGCTGATTATTACATAATAC-AAAAGTATTTGTTCTT  240
      |||||||||||   ||||||||||||||||||| ||||||||||||||||
seq2  AGTTTTTCAATGTGGCTGATTATTACATAATACAAAAAGTATTTGTTCTT  245

seq1  AATTGGTTTGAATTGTAATGAATTTAACTGAATTATGAATTACTTATATT  290
      || | | |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTTGAATTGTAATGAATTTAACTGAATTATGAATTACTTATATT  295

seq1  CAGTGACCTAAATAAACTTATTATGTGATTTA-TTTTTTTTTTATTTTTA  339
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGTGACCTAAATAAACTTATTATGTGATTTATTTTTTTTTTTATTTTTA  345

seq1  AATACGTAAGTTTGTGTGGATATAACTGCAAG-AAAGCTTTGTTGAACTT  388
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATACGTAAGTTTGTGTGGATATAACTGCAAGAAAAGCTTTGTTGAACTT  395

seq1  TTTGCAGAATATAAGCAATTGAAGGGTTTAGATTATAATCTAATATCTGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAATATAAGCAATTGAAGGGTTTAGATTATAATCTAATATCTGT  445

seq1  ACTTAAATGTTTTTTCTTTTTATGCACTCACTGCACAAACCAGTGGGTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATGTTTTTTCTTTTTATGCACTCACTGCACAAACCAGTGGGTTT  495

seq1  CCTTATGAATTTGTCACACATGGATATAATGTATACACATTAATTTTGTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGAATTTGTCACACATGGATATAATGTATACACATTAATTTTGTT  545

seq1  TACCCTTTATTTGGTTCTTATATCTCAAGCATCACTCCTCTGGAGTTTAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTATTTGGTTCTTATATCTCAAGCATCACTCCTCTGGAGTTTAA  595

seq1  ATATTTGCATCTTTGCCTGAAATAATGTTTCCCCCTAAGGATATAATGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCATCTTTGCCTGAAATAATGTTTCCCCCTAAGGATATAATGAA  645

seq1  ATATAAAAGGGAAATAGATGACCATTTCTTATCCTGGATATGTGAGTTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAGGGAAATAGATGACCATTTCTTATCCTGGATATGTGAGTTTT  695

seq1  GGTTATTTGACTTCAAATTTTAAGTGATGTAAAAGTGAGAAAAACTAAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTGACTTCAAATTTTAAGTGATGTAAAAGTGAGAAAAACTAAGG  745

seq1  ACTAACAAAACTATCGATAAGACTTAAATATGAGAAACAACTCTAATGGC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAAACTATCGATAAGACTTAAATATGAGAAACAACTCTAATGGC  795

seq1  TTGCCCACTTTGTGACAAATAACTAGTCAGGTGTGGTGTCTAGCATTCAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACTTTGTGACAAATAACTAGTCAGGTGTGGTGTCTAGCATTCAA  845

seq1  AATACCCACCCGAAGTAAAAACAAACAAACAAACAAACAAACAAACAAGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCACCCGAAGTAAAAACAAACAAACAAACAAACAAACAAACAAGC  895

seq1  TGTTAGAGGCCAACAGAAAAGCCTCATAGGTAAAAGTCTCTAGGTTCAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGCCAACAGAAAAGCCTCATAGGTAAAAGTCTCTAGGTTCAAT  945

seq1  CTTCCCAGCATTGGGGAGAAATATTTCCTCTCTTACTTCTAGATCTAAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGCATTGGGGAGAAATATTTCCTCTCTTACTTCTAGATCTAAAG  995

seq1  TCACAAAATATATTCATTTTAAAATATGAAGTTAAAGATTATGCATGTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATATATTCATTTTAAAATATGAAGTTAAAGATTATGCATGTGT  1045

seq1  TTAATAGAATTC  1050
      ||||||||||||
seq2  TTAATAGAATTC  1057