BAC Information

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BAC

Clone NameB6Ng01-182I11
Chromosome18 (Build37)
Map Location 36,382,332 - 36,527,787
singlet/doubletdoublet
Overlap geneLOC100041531, Pura, 0610010O12Rik
Upstream geneCtnna1, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
Downstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182I11.bB6Ng01-182I11.g
ACCGA008392GA008393
length1,162664
definitionB6Ng01-182I11.b B6Ng01-182I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,526,600 - 36,527,787)(36,382,332 - 36,382,995)
sequence
gaattctgtccacaggtcctgggccctaagtgaaaaaagcagctgactgg
gtgccagtgcctgctttcctcgggtacataatgaactcgggtagttaata
actcacaactgcaggcaagcatgttaaataactttcacacaaacttgtga
attatgattgctaacacttttgatctccagaataaagaaaccttttctta
aaacggcagttatcaatattaattaaaccaacaaaaagaaactcaaatct
gtattttctgcaggaagtccacataacctaagatgcacttgttctagaca
aactgaataaaattctaaacttatcaaatgcacactagagagtaagcctg
gaactggcaaagagtgttttgggtgaaggatgaaacaccagacgagcatt
catgaatttcagtttgggcagaatctactagacaagccagatgctggact
aatttcttttatccttttttgctgtgttggcatataacacagtaaagtgc
aaaaccctaactgtccaacttgaagaggtgtgcacctagattaaccctaa
tatatgacaggcagggggaccatctccgaggtagcacttgtgtagcatac
acaaggccctaattttgctcatagagttgttgcaaggattaaatgttgat
atacataaagcttttaggaaaccatttggtaaaattaaccgtttttaaaa
gccgaaacagctgttctgtaaaccaaagggttataaaatagtcacaagac
atgtatgcagcacaatgcttctcgccgggttttatttttaatcctgcact
gattgatagcttttatataaagagtgattatatgccagcaatgtcaagtt
gctcttttttaacatttgctcccactttcttgggttcttgcagtccagta
agtttactcttcaataaatgaactgccttgagtagcactgctcgagcata
cagacccagcaaacaggggcatctcagcgatagactgatcagattatgaa
aatagtaagaaacaactcagcagcaagccggagatgacgtgaggcacagc
taacataaaaataacctatagcttaaacaacagctgcagagagaaccatg
gcctatttcccaccatgctcagaggattcctagagaacatgtcacgcaga
tcgtcatcccca
gaattcatttatacatcacttgctattttaaaatgcaccgctaggtggca
atatgaccaatttaattgtcactgttaatatagtgattttttttttcaaa
ctcctatttacaaaatcccaaaatagaaaaataattatttgaagaaaagt
gtggtcacagcagacacacaaacccatgtctagtgaatccattgaggtat
ttctttcccacgacctcactcattctttggctagacttctctgaatagct
tcatctgttccttggccccatttcctacccagcttagaaaaaccatctcc
tctttcatttctttccacctcagtaagtggcattggtacactacatcttc
tctgctgctcaagtcagacaccaaaagtcactctgttctagggtggaggg
ctttgtgctattaattcattattttgttatattattagttggttcagtgt
ttggctttgttttttaaagaatgtggttttatagctgggtgtgatagcac
acacgtttaatcccagcactgggatgtagagacaggaggatttctgagtt
caaagctagcctgatctacagagtgagttctgggacatccaaggttacac
agagaaaccctgtctcaaaaacgaacaaaggaaagaaagaaaagaaaaaa
gaagggaaggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36526600_36527787
seq2: B6Ng01-182I11.b_40_1201 (reverse)

seq1  TGGGGATGACGTACTGGCTGACATGTTCTCTAGGGGATTCCTCCTTGAGC  50
      |||||||||||  |||  ||||||||||||||  ||| |||||  |||||
seq2  TGGGGATGACGATCTGCGTGACATGTTCTCTA--GGAATCCTC--TGAGC  46

seq1  ACTGGTGGGGAAAATAGCCATTGGTGTCTTCCTCTTGCAGCTGTTTGTTT  100
      | |||||||  |||||| |  |||| |||  ||| |||||||| ||||||
seq2  A-TGGTGGG--AAATAGGCCATGGT-TCT--CTC-TGCAGCTG-TTGTTT  88

seq1  TAGCTTATTAGGGTTATTTTATGTTAGCTTGTTGGCCCTCACGTCATCCT  150
       ||||   |||| |  ||||||||||||    ||  ||||||||||| ||
seq2  AAGCT--ATAGGTTATTTTTATGTTAGC----TGTGCCTCACGTCAT-CT  131

seq1  CCGGCCTTGCTGCTGAGGTTGGTTTTCTTACTATTTTCATAATTCTGATC  200
      |||| ||||||||||| ||||  ||||||||||||||||||| |||||||
seq2  CCGG-CTTGCTGCTGA-GTTG--TTTCTTACTATTTTCATAA-TCTGATC  176

seq1  AGTCTATCGCTTGAGATTGCCCCTGTTTGCTGGGTCTGTATGCTCGAGCA  250
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AGTCTATCGC-TGAGA-TGCCCCTGTTTGCTGGGTCTGTATGCTCGAGCA  224

seq1  GTGCTACTCAAGGCAGTTCATTTATTGAAGAGTAAACTTACTGGACTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTCAAGGCAGTTCATTTATTGAAGAGTAAACTTACTGGACTGCA  274

seq1  AGAACCCAAGAAAGTGGGAGCAAATGTTAAAAAAGAGCAACTTGACATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAAGAAAGTGGGAGCAAATGTTAAAAAAGAGCAACTTGACATTG  324

seq1  CTGGCATATAATCACTCTTTATATAAAAGCTATCAATCAGTGCAGGATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATATAATCACTCTTTATATAAAAGCTATCAATCAGTGCAGGATTA  374

seq1  AAAATAAAACCCGGCGAGAAGCATTGTGCTGCATACATGTCTTGTGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAACCCGGCGAGAAGCATTGTGCTGCATACATGTCTTGTGACTA  424

seq1  TTTTATAACCCTTTGGTTTACAGAACAGCTGTTTCGGCTTTTAAAAACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAACCCTTTGGTTTACAGAACAGCTGTTTCGGCTTTTAAAAACGG  474

seq1  TTAATTTTACCAAATGGTTTCCTAAAAGCTTTATGTATATCAACATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTACCAAATGGTTTCCTAAAAGCTTTATGTATATCAACATTTAA  524

seq1  TCCTTGCAACAACTCTATGAGCAAAATTAGGGCCTTGTGTATGCTACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAACAACTCTATGAGCAAAATTAGGGCCTTGTGTATGCTACACA  574

seq1  AGTGCTACCTCGGAGATGGTCCCCCTGCCTGTCATATATTAGGGTTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACCTCGGAGATGGTCCCCCTGCCTGTCATATATTAGGGTTAATC  624

seq1  TAGGTGCACACCTCTTCAAGTTGGACAGTTAGGGTTTTGCACTTTACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCACACCTCTTCAAGTTGGACAGTTAGGGTTTTGCACTTTACTGT  674

seq1  GTTATATGCCAACACAGCAAAAAAGGATAAAAGAAATTAGTCCAGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGCCAACACAGCAAAAAAGGATAAAAGAAATTAGTCCAGCATCT  724

seq1  GGCTTGTCTAGTAGATTCTGCCCAAACTGAAATTCATGAATGCTCGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTCTAGTAGATTCTGCCCAAACTGAAATTCATGAATGCTCGTCTG  774

seq1  GTGTTTCATCCTTCACCCAAAACACTCTTTGCCAGTTCCAGGCTTACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCATCCTTCACCCAAAACACTCTTTGCCAGTTCCAGGCTTACTCT  824

seq1  CTAGTGTGCATTTGATAAGTTTAGAATTTTATTCAGTTTGTCTAGAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGCATTTGATAAGTTTAGAATTTTATTCAGTTTGTCTAGAACAA  874

seq1  GTGCATCTTAGGTTATGTGGACTTCCTGCAGAAAATACAGATTTGAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCTTAGGTTATGTGGACTTCCTGCAGAAAATACAGATTTGAGTTT  924

seq1  CTTTTTGTTGGTTTAATTAATATTGATAACTGCCGTTTTAAGAAAAGGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTGGTTTAATTAATATTGATAACTGCCGTTTTAAGAAAAGGTT  974

seq1  TCTTTATTCTGGAGATCAAAAGTGTTAGCAATCATAATTCACAAGTTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTCTGGAGATCAAAAGTGTTAGCAATCATAATTCACAAGTTTGT  1024

seq1  GTGAAAGTTATTTAACATGCTTGCCTGCAGTTGTGAGTTATTAACTACCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTATTTAACATGCTTGCCTGCAGTTGTGAGTTATTAACTACCC  1074

seq1  GAGTTCATTATGTACCCGAGGAAAGCAGGCACTGGCACCCAGTCAGCTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATTATGTACCCGAGGAAAGCAGGCACTGGCACCCAGTCAGCTGC  1124

seq1  TTTTTTCACTTAGGGCCCAGGACCTGTGGACAGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTTAGGGCCCAGGACCTGTGGACAGAATTC  1162

seq1: chr18_36382332_36382995
seq2: B6Ng01-182I11.g_64_727

seq1  GAATTCATTTATACATCACTTGCTATTTTAAAATGCACCGCTAGGTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATACATCACTTGCTATTTTAAAATGCACCGCTAGGTGGCA  50

seq1  ATATGACCAATTTAATTGTCACTGTTAATATAGTGATTTTTTTTTTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACCAATTTAATTGTCACTGTTAATATAGTGATTTTTTTTTTCAAA  100

seq1  CTCCTATTTACAAAATCCCAAAATAGAAAAATAATTATTTGAAGAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTTACAAAATCCCAAAATAGAAAAATAATTATTTGAAGAAAAGT  150

seq1  GTGGTCACAGCAGACACACAAACCCATGTCTAGTGAATCCATTGAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCACAGCAGACACACAAACCCATGTCTAGTGAATCCATTGAGGTAT  200

seq1  TTCTTTCCCACGACCTCACTCATTCTTTGGCTAGACTTCTCTGAATAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCACGACCTCACTCATTCTTTGGCTAGACTTCTCTGAATAGCT  250

seq1  TCATCTGTTCCTTGGCCCCATTTCCTACCCAGCTTAGAAAAACCATCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTCCTTGGCCCCATTTCCTACCCAGCTTAGAAAAACCATCTCC  300

seq1  TCTTTCATTTCTTTCCACCTCAGTAAGTGGCATTGGTACACTACATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTTCTTTCCACCTCAGTAAGTGGCATTGGTACACTACATCTTC  350

seq1  TCTGCTGCTCAAGTCAGACACCAAAAGTCACTCTGTTCTAGGGTGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCTCAAGTCAGACACCAAAAGTCACTCTGTTCTAGGGTGGAGGG  400

seq1  CTTTGTGCTATTAATTCATTATTTTGTTATATTATTAGTTGGTTCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTATTAATTCATTATTTTGTTATATTATTAGTTGGTTCAGTGT  450

seq1  TTGGCTTTGTTTTTTAAAGAATGTGGTTTTATAGCTGGGTGTGATAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGTTTTTTAAAGAATGTGGTTTTATAGCTGGGTGTGATAGCAC  500

seq1  ACACGTTTAATCCCAGCACTGGGATGTAGAGACAGGAGGATTTCTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTTAATCCCAGCACTGGGATGTAGAGACAGGAGGATTTCTGAGTT  550

seq1  CAAAGCTAGCCTGATCTACAGAGTGAGTTCTGGGACATCCAAGGTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTAGCCTGATCTACAGAGTGAGTTCTGGGACATCCAAGGTTACAC  600

seq1  AGAGAAACCCTGTCTCAAAAACGAACAAAGGAAAGAAAGAAAAGAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAACGAACAAAGGAAAGAAAGAAAAGAAAAAA  650

seq1  GAAGGGAAGGGGAG  664
      ||||||||||||||
seq2  GAAGGGAAGGGGAG  664