BAC Information

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BAC

Clone NameB6Ng01-183C13
Chromosome18 (Build37)3 (Build37)
Map Location 56,807,106 - 56,807,38658,557,707 - 58,558,863
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
Downstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183C13.bB6Ng01-183C13.g
ACCGA008860GA008861
length1021,150
definitionB6Ng01-183C13.b B6Ng01-183C13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,807,106 - 56,807,386)(58,557,707 - 58,558,863)
sequence
actgtgtagaccaggctggcctcaaactcatagagacctgcctgcctctg
tttcctgagtgccaggaatgaaagaaagaaagaaagaaagagagagagag
ag
gaattctcacctgtcacttagcaaatacagtcatttttatatagacaagt
gtaggcccccgctggtagtctttatttgtacagtggtttataattgtata
aataccttctgtttctcaagaaagtacctgcatggcatggcatggcatgg
catgacatggcatggcaggggctagtcacttcagctctagactgtctccc
tagagagcctctactctctccagccttggtcaagacatcaggttcctttg
tgggctttcaagacagttttgtgggctttgaacttgctgatcatattatt
gcctcagcctccaagtgctaaaattacaggcatgcaccacatcttgcccc
atatctggcacaggctaaggttttctgagtgatgtcagcaaatgtaagga
gtcctgagtactctccttgatacattttcacagaagaagtaacctgaaag
atagatcagttttcacctgccaaggaacttcagagaccaggtatctgcct
gtaagcaccccttccatggtagcttaaccctgggtgaaaatgaaaattca
ttttttttctgaagagttattttaaggttcaaatatttatttaattagct
ttatttgtgtgtttgtgtgtgaaactatgccatatgtactcaggtgatca
cagaagccagaggagagcatcattaggttccctagactcttgatcggatg
actaagaacattttttttcttagcaaagcaggaattggacaggtggggcg
tagaaaaataattcctgactatcaggtgcacagcagtgagccctcagcag
atgggactgtgactggcattagctgagtgatgatctgtttgtaaggcttg
tgtttggaatactttttcttgtgcaaagctactgagattttttttctttt
tttttaaaagagaagtcttgactctttttggctgaactgctagggtgaat
actttaaagtagaaatctttcggatcatgccactttttgtttagaatccc
cttgttcagagtccccttgggcctgtagatgatatccaaccttctttgat
ctggcatcatcattcctctagcatccctttgaaactctcccttgcctaag
gtcctcgtcattcgtttattttttccacttttattagaatattccttcat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_56807106_56807386
seq2: B6Ng01-183C13.b_55_150 (reverse)

seq1  CTCTCTCTCTCTCTTTCTTTCTTTCTTTTCAAGACAGGGTTTCTCTGTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCCTGGCTGTCCTGGAACTGACTTTGTAGACCAGGCTGGCCTCGAACT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAAATGAAGGACTGCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCACCACTCTGTACGATTGTCTGAGATTTTAAAACTGTGGACAAACTGGC  200
            |||| |     | |||     |||    || |       ||   
seq2  ------CTCTCT----CTCTCTCTTTCTTTCTTTCTTT-------CT---  30

seq1  CAGATGGTACACAAGTTTAATCCCAGCAGTGGGGAGACAGAGGCAGGAAG  250
                     || | |||  ||| |  ||| ||||||||||| ||
seq2  ---------------TTCATTCCTGGCACTCAGGAAACAGAGGCAGGCAG  65

seq1  ATCTCTGTGAGTTTAAGGCTAGCCTGGTCTA  281
       ||||| ||||||| |||| |||||||||||
seq2  GTCTCTATGAGTTTGAGGCCAGCCTGGTCTA  96

seq1: chr3_58557707_58558863
seq2: B6Ng01-183C13.g_66_1215

seq1  GAATTCTCACCTGTCACTCAGCAAATACAGTCATTTTTATATAGACAAGT  50
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGTCACTTAGCAAATACAGTCATTTTTATATAGACAAGT  50

seq1  GTAGGCCCCCGCTGGTAGTCTTTATTTGTACAGTGGTTTATAATTGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCCCCGCTGGTAGTCTTTATTTGTACAGTGGTTTATAATTGTATA  100

seq1  AATACCTTCTGTTTCTCAAGAAAGTACCTGCATGGCATGGCATGGCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTCTGTTTCTCAAGAAAGTACCTGCATGGCATGGCATGGCATGG  150

seq1  CATGACATGGCATGGCAGGGGCTAGTCACTTCAGCTCTAGACTGTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATGGCATGGCAGGGGCTAGTCACTTCAGCTCTAGACTGTCTCCC  200

seq1  TAGAGAGCCTCTACTCTCTCCAGCCTTGGTCAAGACATCAGGTTCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCCTCTACTCTCTCCAGCCTTGGTCAAGACATCAGGTTCCTTTG  250

seq1  TGGGCTTTCAAGACAGTTTTGTGGGCTTTGAACTTGCTGATCATATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTCAAGACAGTTTTGTGGGCTTTGAACTTGCTGATCATATTATT  300

seq1  GCCTCAGCCTCCAAGTGCTAAAATTACAGGCATGCACCACATCTTGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTCCAAGTGCTAAAATTACAGGCATGCACCACATCTTGCCCC  350

seq1  ATATCTGGCACAGGCTAAGGTTTTCTGAGTGATGTCAGCAAATGTAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGCACAGGCTAAGGTTTTCTGAGTGATGTCAGCAAATGTAAGGA  400

seq1  GTCCTGAGTACTCTCCTTGATACATTTTCACAGAAGAAGTAACCTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTACTCTCCTTGATACATTTTCACAGAAGAAGTAACCTGAAAG  450

seq1  ATAGATCAGTTTTCACCTGCCAAGGAACTTCAGAGACCAGGTATCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCAGTTTTCACCTGCCAAGGAACTTCAGAGACCAGGTATCTGCCT  500

seq1  GTAAGCACCCCTTCCATGGTAGCTTAACCCTGGGTGAAAATGAAAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACCCCTTCCATGGTAGCTTAACCCTGGGTGAAAATGAAAATTCA  550

seq1  TTTTTTTTCTGAAGAGTTATTTTAAGGTTCAAATATTTATTTAATTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGAAGAGTTATTTTAAGGTTCAAATATTTATTTAATTAGCT  600

seq1  TTATTTGTGTGTTTGTGTGTGAAACTATGCCATATGTACTCAGGTGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTGTGTTTGTGTGTGAAACTATGCCATATGTACTCAGGTGATCA  650

seq1  CAGAAGCCAGAGGAGAGCATCATTAGGTTCCCTAGACTCTTGATCGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGAGGAGAGCATCATTAGGTTCCCTAGACTCTTGATCGGATG  700

seq1  ACTAAGAACATTTTTTTTCTTAGCAAAGCAGGAATTGGACAGGTGGGGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACATTTTTTTTCTTAGCAAAGCAGGAATTGGACAGGTGGGGCG  750

seq1  TAGAAAAATAATTCCTGACTATCAGGTGCACAGCAGTGAGCCCTCAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAATTCCTGACTATCAGGTGCACAGCAGTGAGCCCTCAGCAG  800

seq1  ATGGGACTGTGACTGGCATTAGCTGAGTGATGATCTGTTTGTAAGGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTGTGACTGGCATTAGCTGAGTGATGATCTGTTTGTAAGGCTTG  850

seq1  TGTTTGGAATAC-TTTTCTTGTGCAAAGCTACTGAGATTTTTTT--CTTT  897
      |||||||||||| |||||||||||||||||||||||||||||||   |||
seq2  TGTTTGGAATACTTTTTCTTGTGCAAAGCTACTGAGATTTTTTTTCTTTT  900

seq1  TTTTTAAAAGAGAAGTCTTGACTC-TTTTGGCTGAACTGCTAGGGTGAAT  946
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTAAAAGAGAAGTCTTGACTCTTTTTGGCTGAACTGCTAGGGTGAAT  950

seq1  ACTTTAAGGTAGAAATCTTTCGGATCATGCCAACTTTTTGTTTAGAATCC  996
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTTAAAGTAGAAATCTTTCGGATCATGCC-ACTTTTTGTTTAGAATCC  999

seq1  CCTTGTTCAGAGTCCCCTTGGG-CTGTAGGATGATATCCAACC-TCTTTG  1044
      |||||||||||||||||||||| ||||| |||||||||||||| ||||||
seq2  CCTTGTTCAGAGTCCCCTTGGGCCTGTA-GATGATATCCAACCTTCTTTG  1048

seq1  ATCTGGCCATCAATCATTCCCTCTAGCATCCCTTTGGAAAACTCTTCCCT  1094
      |||||| |||| |||||| |||||||||||||||||  |||||| |||||
seq2  ATCTGG-CATC-ATCATT-CCTCTAGCATCCCTTTG--AAACTC-TCCCT  1092

seq1  TTGCCCTAGGGTCCTCGTCATCCTTTTATTTTTTCCAATTTTTTTATTAG  1144
      |   |||| |||||||||||| | |||||||||||||    |||||||||
seq2  T--GCCTAAGGTCCTCGTCATTCGTTTATTTTTTCCA---CTTTTATTAG  1137

seq1  ATATTTTCTTCAT  1157
      |   || ||||||
seq2  AATATTCCTTCAT  1150