BAC Information

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BAC

Clone NameB6Ng01-183F20
Chromosome18 (Build37)
Map Location 44,719,264 - 44,815,773
singlet/doubletdoublet
Overlap genenone
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183F20.bB6Ng01-183F20.g
ACCGA009008GA009009
length1,163506
definitionB6Ng01-183F20.b B6Ng01-183F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,719,264 - 44,720,410)(44,815,262 - 44,815,773)
sequence
gaattccttcactgatattacatgcagtttattctggctccagacagaga
ctatagaaatcccctaggacactggttctcaacctgtgggtcgcaactca
gttagagaccctgtgtctccaaaaaatatttacattatgattcataacag
tagaaaaattagttatggagtaagaacaaaaataatgttttggtgtggga
tcaccacaccatggggagctatgttaaagggtcacagcactaaaaaggtt
gagattgggactgtttcaacatccaacctctgagggctgacaactattag
attcttgtggccaaaatcaggccagagttgtgcaagcagaataaaccctt
tccatcccaacttgctttttggtcatgatgtttcattacagcagtggaaa
ccctaagacgcaagccaatctctacacgtgatggtgaactcctaggtttc
cctcttgcagttgactgcgtgtagtcagcactagatgcatatccatcaag
ggaggagctggctgtctcatagatggcaggaagtctagcaatcatgtgtt
tgcttgggataagggccacagcaaaggcttaatggctgccaaaggaggca
taggagagatggatgcaggatccactggagaagatttaaggtttccttag
agctcagtttgaaagctggattccaacaggtaggaagaacgagagatggg
gggagagtgtccgagtgggcagaagagcttaaatgaaggctctgtatgat
ttaccgggggtaacatgactgctggatgatgggtctttgcagatggtgct
ctgggccctctcagcagcccatctgctccttactggcactggtttagaag
gttagccaaaagtgcagatcttcacactcctgaaaagaacactaattttg
ccgaacttggaaacaatttaagctgggggaaggggccaggaaaacatttt
cccttcctaatgctggtgcctaaattcccaactttttcccttgcctgcag
atctcctttgtcttgcctttaggtgccaaggtcagaaaggaacctatcag
accatcctttcagaagagttccttctcttatcctcaaaagaagaaaggta
gaatgagttatgtcctagtaatcaatcagcagacctcctctctccacagg
cttccagtgttga
caggcattgagtttccagagcctgaaagcagatgcagataagagaggaat
gatccacacttaacagaggacatagaaactgcagcccttggctgtacccc
aggcacctgaggactgctgctttgatatttgaggcactgtcaccagaacc
aatactcctcctgcccctgctggcagaactctggttcctattaaagttgg
ccaaatcactgtggggcagagggtgctgaggctggtgaggttggcagcta
aggctccgtgtggctccagatgtactgactgtcacagtgaggtcatgact
cagacccagtggaagagcagtggatggagccaaagatatggtgtctgtgg
tagatgaaccaggtagatgtcaaagtaaacagaggaaagagaggaagtgt
ggtataaggatgggttggctggtaacaggttaggctggtgatagttgagg
tctcagagatgggggctggggaggacacagagggaggagaaggagggaga
agaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44719264_44720410
seq2: B6Ng01-183F20.b_48_1210

seq1  GAATTCCTTCACTGATATTACATGCAGTTTATTCTGGCTCCAGACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCACTGATATTACATGCAGTTTATTCTGGCTCCAGACAGAGA  50

seq1  CTATAGAAATCCCCTAGGACACTGGTTCTCAACCTGTGGGTCGCAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAATCCCCTAGGACACTGGTTCTCAACCTGTGGGTCGCAACTCA  100

seq1  GTTAGAGACCCTGTGTCTCCAAAAAATATTTACATTATGATTCATAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGACCCTGTGTCTCCAAAAAATATTTACATTATGATTCATAACAG  150

seq1  TAGAAAAATTAGTTATGGAGTAAGAACAAAAATAATGTTTTGGTGTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATTAGTTATGGAGTAAGAACAAAAATAATGTTTTGGTGTGGGA  200

seq1  TCACCACACCATGGGGAGCTATGTTAAAGGGTCACAGCACTAAAAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACACCATGGGGAGCTATGTTAAAGGGTCACAGCACTAAAAAGGTT  250

seq1  GAGATTGGGACTGTTTCAACATCCAACCTCTGAGGGCTGACAACTATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGGACTGTTTCAACATCCAACCTCTGAGGGCTGACAACTATTAG  300

seq1  ATTCTTGTGGCCAAAATCAGGCCAGAGTTGTGCAAGCAGAATAAACCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTGGCCAAAATCAGGCCAGAGTTGTGCAAGCAGAATAAACCCTT  350

seq1  TCCATCCCAACTTGCTTTTTGGTCATGATGTTTCATTACAGCAGTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCAACTTGCTTTTTGGTCATGATGTTTCATTACAGCAGTGGAAA  400

seq1  CCCTAAGACGCAAGCCAATCTCTACACCTGATGGTGAACTCCTAGGTTTC  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCTAAGACGCAAGCCAATCTCTACACGTGATGGTGAACTCCTAGGTTTC  450

seq1  CCTCTTGCAGTTGACTGCGTGTAGTCAGCACTAGATGCATATCCATCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAGTTGACTGCGTGTAGTCAGCACTAGATGCATATCCATCAAG  500

seq1  GGAGGAGCTGGCTGTCTCATAGATGGCAGGAAGTCTAGCAATCATGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTGGCTGTCTCATAGATGGCAGGAAGTCTAGCAATCATGTGTT  550

seq1  TGCTTGGGATAAGGGCCACAGCAAAGGCTTAATGGCTGCCAAAGGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGATAAGGGCCACAGCAAAGGCTTAATGGCTGCCAAAGGAGGCA  600

seq1  TAGGAGAGATGGATGCAGGATCCACTGGAGAAGATTTAAGGTTTCCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGAGATGGATGCAGGATCCACTGGAGAAGATTTAAGGTTTCCTTAG  650

seq1  AGCTCAGTTTGAAAGCTGGATTCCAACAGGTAGGAAGAACGAGAGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTTGAAAGCTGGATTCCAACAGGTAGGAAGAACGAGAGATGGG  700

seq1  GGGAGAGTGTCCGAGTGGGCAGAAGAGCTTAAATGAAGGCTCTGTATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTGTCCGAGTGGGCAGAAGAGCTTAAATGAAGGCTCTGTATGAT  750

seq1  TTACCGGGGGTAACATGACTGCTGGATGATGGGTCTTTGCAGATGGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCGGGGGTAACATGACTGCTGGATGATGGGTCTTTGCAGATGGTGCT  800

seq1  CTGGG-CCTCTCAGCAGCCCATCTGCTCCTTACTGGCACTGGTTTAGAAG  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCTCTCAGCAGCCCATCTGCTCCTTACTGGCACTGGTTTAGAAG  850

seq1  GTTAGCC-AAAGTGCAGATCTTCACACTCCTGAAAAGAACACTAA-TTTG  897
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTAGCCAAAAGTGCAGATCTTCACACTCCTGAAAAGAACACTAATTTTG  900

seq1  CCGAACTTGGAAACAATTTAAGCTGGGGGAAGGGG-CAGG-AAACATTTT  945
      ||||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CCGAACTTGGAAACAATTTAAGCTGGGGGAAGGGGCCAGGAAAACATTTT  950

seq1  -CCTTCCTAATGCTGTTGTCTAAATT-CCAACTTTTT-CCTTG-CTGCAG  991
       |||||||||||||| || ||||||| |||||||||| ||||| ||||||
seq2  CCCTTCCTAATGCTGGTGCCTAAATTCCCAACTTTTTCCCTTGCCTGCAG  1000

seq1  ATCTCCTTTGTCTTG-CTTTAGGTGCC-AGGTCAGAAA-GAACCTATCAG  1038
      ||||||||||||||| ||||||||||| |||||||||| |||||||||||
seq2  ATCTCCTTTGTCTTGCCTTTAGGTGCCAAGGTCAGAAAGGAACCTATCAG  1050

seq1  ACCATCC-TTCAG-AGAGTT-CTTCTC-TAT-CTCAAAAGAAAGAAGGGT  1083
      ||||||| ||||| |||||| |||||| ||| |||||||| ||||| |||
seq2  ACCATCCTTTCAGAAGAGTTCCTTCTCTTATCCTCAAAAG-AAGAAAGGT  1099

seq1  AGAATTGATGTTATGTCCCTAGTAAACCATCAGCAG---CCCTCTCTCCA  1130
      |||| ||| ||||||| |||||||| | ||||||||    ||||||||||
seq2  AGAA-TGA-GTTATGT-CCTAGTAATCAATCAGCAGACCTCCTCTCTCCA  1146

seq1  CAGGGCTTCAGTGTTGA  1147
      ||||  | |||||||||
seq2  CAGGCTTCCAGTGTTGA  1163

seq1: chr18_44815262_44815773
seq2: B6Ng01-183F20.g_68_579 (reverse)

seq1  TCTTCTTCTCCCTCCTTCTCCTCCCTCTGTGTCCTCCCCAGCCCCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTCCCTCCTTCTCCTCCCTCTGTGTCCTCCCCAGCCCCCATCT  50

seq1  CTGAGACCTCAACTATCACCAGCCTAACCTGTTACCAGCCAACCCATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTCAACTATCACCAGCCTAACCTGTTACCAGCCAACCCATCCT  100

seq1  TATACCACACTTCCTCTCTTTCCTCTGTTTACTTTGACATCTACCTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACACTTCCTCTCTTTCCTCTGTTTACTTTGACATCTACCTGGTT  150

seq1  CATCTACCACAGACACCATATCTTTGGCTCCATCCACTGCTCTTCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCACAGACACCATATCTTTGGCTCCATCCACTGCTCTTCCACTG  200

seq1  GGTCTGAGTCATGACCTCACTGTGACAGTCAGTACATCTGGAGCCACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGTCATGACCTCACTGTGACAGTCAGTACATCTGGAGCCACACG  250

seq1  GAGCCTTAGCTGCCAACCTCACCAGCCTCAGCACCCTCTGCCCCACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTAGCTGCCAACCTCACCAGCCTCAGCACCCTCTGCCCCACAGTG  300

seq1  ATTTGGCCAACTTTAATAGGAACCAGAGTTCTGCCAGCAGGGGCAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCCAACTTTAATAGGAACCAGAGTTCTGCCAGCAGGGGCAGGAGG  350

seq1  AGTATTGGTTCTGGTGACAGTGCCTCAAATATCAAAGCAGCAGTCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGTTCTGGTGACAGTGCCTCAAATATCAAAGCAGCAGTCCTCAG  400

seq1  GTGCCTGGGGTACAGCCAAGGGCTGCAGTTTCTATGTCCTCTGTTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGGGTACAGCCAAGGGCTGCAGTTTCTATGTCCTCTGTTAAGTG  450

seq1  TGGATCATTCCTCTCTTATCTGCATCTGCTTTCAGGCTCTGGAAACTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATTCCTCTCTTATCTGCATCTGCTTTCAGGCTCTGGAAACTCAA  500

seq1  TGCCTGGAATTC  512
      ||||||||||||
seq2  TGCCTGGAATTC  512