BAC Information

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BAC

Clone NameB6Ng01-183G07
Chromosome18 (Build37)
Map Location 82,537,475 - 82,650,159
singlet/doubletdoublet
Overlap geneGalr1, Mbp
Upstream geneLOC100039458, LOC100040871, B020010K11Rik
Downstream geneEG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183G07.bB6Ng01-183G07.g
ACCGA009030GA009031
length1,2341,015
definitionB6Ng01-183G07.b B6Ng01-183G07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,537,475 - 82,538,685)(82,649,155 - 82,650,159)
sequence
gaattcctttcaccatttttttctagtcctacattccccaggcaccctat
tatgggggcagagcacagctatccacttacgtgggcacctttttgcatgg
aatcaagagattttagcaagtgaacatttcacaatcaaccattaatacca
tattgttcaaaaataatgttagcacaataaattttttaaatgtaatgttt
cttgattacatctttttattaaaccaagtgtacccacaaatactgaaatc
atacatgcaaatcaactaaaaacacaaaggcttagagcagaatgccggtg
aattttgattgaggaaagaccttccaaagcaaaagataaaagaacttaaa
ggaaaatattaataaattcagctgttttttttaaatgccattttaatcaa
aattctacccaaattaaaaaccatgcatcaaaacatacaaaagcagtgtt
aggaaaaagaaggccacagaggaaattgtcccagtatgtcattatgacct
ggaatactctgtcaccactacctgccacctctcccatgccacagcaatct
ctcatctatcacctcacaggcaagtcagccatgatggagcccagtgtgtc
cttaacttccttggaatagagcaggtttttcagtctgctccagggtcagc
cctgcacctgacccgatgcttctccagtcttcatcttccttaccactctc
actgaacacccctccatgggtctaaaaccccctcacaatagcatgctcct
tacttcctcttagttgtagcaatcacacccaacaccacacatggccaacc
tcttacttcatctttggacttcagcctatcaccctagggacctatcaccc
tagggacctatcaccctagggacctatcaccctagaaatgctctcctttc
acatgcatcttcccatctcaatgcctccaccttgaggtgccttgcttacg
gttacagtgctgctcccagtctgtctactccatgggaccaccagctctgc
gagaggcatgtgctctctgatttgtttgtgtctgacactctgctatgtga
tggttcgtataattcttcagcccagggaatggcactatttattaagggtg
tggaataagtggtgtgttccacttgttagaattgtcggctttaagaaccc
tcaattctaggctttcctgaaagccaagaattcgtcttagcgagctcgag
atgagaagagtgttagagctctccagcttctcct

gaattcacagacatcctctgcttctgcatcccaagtgccgggcttcaagg
aagatgccaccatactctgctaggtgaataagccttacgactttacatca
gaaacaaaacaaaggagcaaaaatccccaccctgccaaccaccaaaggga
gaaggaattccccaaaatgcttgtcctgattagaggcaactttctctctg
agcagtcccctggaggaggagaaaacattggtgaaactgtcagaaacgag
ccagtgttagaaacaacccatcggatttaatcgtgaggggaagaaacaag
tagcctttttgctgaaggagttgtgagtggcagatgcgtacacttcatct
ctgacactgccaaaaccaccatggactgtcccatttgtatgtcagaatag
caaacaaaaccccaaaccagtgactctcctgaatgtgtgtgaggtccatt
ctctctgacagtgctgagtggaatgtagtgtcacagcatcctggaaatga
gatgcccattccttataaaattaaacaggtcaccatgagcttcagcgacc
gcactcttgggcgtttgtcccagaggtatgaaaacgacgttcacacaagc
agacggtggatgttcatagcagttttgtgtgcaataactcagaatgattt
cagaatgctgaaaggacccaagcagtctttcaaggaggctggatggcagg
cagagcttctgcaccacgaaggccacagcaaccacacagaataaaccacg
gcatgagcgagcgctcagcacctgtgtgctggcggaactcgaactgcaga
aaatgccgaccccaggacgtgccacatcgatgtgtttgtacagagatgac
agcaccagagaaatggaggaacagcatcctggcagcctgccctgagggag
gggaacagaggaagttgccttgccctgcaccttagaagaataagcgttga
ggcatcacacagaagaggggccttggggttcaatcctttgatgtttgcta
gtcagttcagatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_82537475_82538685
seq2: B6Ng01-183G07.b_43_1276

seq1  GAATTCCTTTCACCATTTTTTTCTAGTCCTACATTCCCCAGGCACCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCACCATTTTTTTCTAGTCCTACATTCCCCAGGCACCCTAT  50

seq1  TATGGGGGCAGAGCACAGCTATCCACTTACGTGGGCACCTTTTTGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGGCAGAGCACAGCTATCCACTTACGTGGGCACCTTTTTGCATGG  100

seq1  AATCAAGAGATTTTAGCAAGTGAACATTTCACAATCAACCATTAATACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGAGATTTTAGCAAGTGAACATTTCACAATCAACCATTAATACCA  150

seq1  TATTGTTCAAAAATAATGTTAGCACAATAAATTTTTTAAATGTAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCAAAAATAATGTTAGCACAATAAATTTTTTAAATGTAATGTTT  200

seq1  CTTGATTACATCTTTTTATTAAACCAAGTGTACCCACAAATACTGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTACATCTTTTTATTAAACCAAGTGTACCCACAAATACTGAAATC  250

seq1  ATACATGCAAATCAACTAAAAACACAAAGGCTTAGAGCAGAATGCCGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCAAATCAACTAAAAACACAAAGGCTTAGAGCAGAATGCCGGTG  300

seq1  AATTTTGATTGAGGAAAGACCTTCCAAAGCAAAAGATAAAAGAACTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATTGAGGAAAGACCTTCCAAAGCAAAAGATAAAAGAACTTAAA  350

seq1  GGAAAATATTAATAAATTCAGCTGTTTTTTTTAAATGCCATTTTAATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATTAATAAATTCAGCTGTTTTTTTTAAATGCCATTTTAATCAA  400

seq1  AATTCTACCCAAATTAAAAACCATGCATCAAAACATACAAAAGCAGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACCCAAATTAAAAACCATGCATCAAAACATACAAAAGCAGTGTT  450

seq1  AGGAAAAAGAAGGCCACAGAGGAAATTGTCCCAGTATGTCATTATGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGAAGGCCACAGAGGAAATTGTCCCAGTATGTCATTATGACCT  500

seq1  GGAATACTCTGTCACCACTACCTGCCACCTCTCCCATGCCACAGCAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTCTGTCACCACTACCTGCCACCTCTCCCATGCCACAGCAATCT  550

seq1  CTCATCTATCACCTCACAGGCAAGTCAGCCATGATGGAGCCCAGTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTATCACCTCACAGGCAAGTCAGCCATGATGGAGCCCAGTGTGTC  600

seq1  CTTAACTTCCTTGGAATAGAGCAGGTTTTTCAGTCTGCTCCAGGGTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTCCTTGGAATAGAGCAGGTTTTTCAGTCTGCTCCAGGGTCAGC  650

seq1  CCTGCACCTGACCCGATGCTTCTCCAGTCTTCATCTTCCTTACCACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCTGACCCGATGCTTCTCCAGTCTTCATCTTCCTTACCACTCTC  700

seq1  ACTGAACACCCCTCCATGGGTCTAAAACCCCCTCACAATAGCATGCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACACCCCTCCATGGGTCTAAAACCCCCTCACAATAGCATGCTCCT  750

seq1  TACTTCCTCTTAGTTGTAGCAATCACACCCAACACCACACATGGCCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTCTTAGTTGTAGCAATCACACCCAACACCACACATGGCCAACC  800

seq1  TCTTACTTCATCTTTGGACTTCAGCCTATCACCCTAGGGACCTATCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCATCTTTGGACTTCAGCCTATCACCCTAGGGACCTATCACCC  850

seq1  TAGGGACCTATCACCCTAGGGACCTATCACCCTAGAAATGCTCTCCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACCTATCACCCTAGGGACCTATCACCCTAGAAATGCTCTCCTTTC  900

seq1  ACATGCATCTTCCCATCTCAATGCCTCCACCTTGAGGTGCCTTGCTTACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCTTCCCATCTCAATGCCTCCACCTTGAGGTGCCTTGCTTACG  950

seq1  GTTACAGTGCTGCTCCCAGTCTGTCTACTCCATGGGACCACCAGCTCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGCTGCTCCCAGTCTGTCTACTCCATGGGACCACCAGCTCTGC  1000

seq1  GAGAGGCATGTGCTCTCTGATTTGTTTGTTGTCTGACACTCTGCCTATGT  1050
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GAGAGGCATGTGCTCTCTGATTTGTTTG-TGTCTGACACTCTG-CTATGT  1048

seq1  GATGGTTCGTAT-ATTC-TCAGCCCAGGGAATGGCACTA-TTAT--AAGG  1095
      |||||||||||| |||| ||||||||||||||||||||| ||||  | ||
seq2  GATGGTTCGTATAATTCTTCAGCCCAGGGAATGGCACTATTTATTAAGGG  1098

seq1  TGTGGAATAA---GTGTGT--CACT--GTAGA--TGTCGGCTTTAAG-AC  1135
      ||||||||||   ||||||  ||||   ||||  ||||||||||||| ||
seq2  TGTGGAATAAGTGGTGTGTTCCACTTGTTAGAATTGTCGGCTTTAAGAAC  1148

seq1  CCTC-ATTCTAG--CTGCCTGGAAGCC-AGTATTC-TGCTAGCAGCCTTC  1180
      |||| |||||||   | |||| ||||| || |||| |  ||||   ||  
seq2  CCTCAATTCTAGGCTTTCCTGAAAGCCAAGAATTCGTCTTAGCGAGCTCG  1198

seq1  AGAT--GAAGA-TG-TAGAGCTCT-CAGCTCCTCCT  1211
      ||||  ||||| || ||||||||| ||||| |||||
seq2  AGATGAGAAGAGTGTTAGAGCTCTCCAGCTTCTCCT  1234


seq1: chr18_82649155_82650159
seq2: B6Ng01-183G07.g_66_1080 (reverse)

seq1  AACATCTG-ACTG-CTAGC-AACATC-AAGGA-TGAACCCC-AGGGCCCT  44
      |||||||| |||| ||||| |||||| ||||| |||||||| ||| ||||
seq2  AACATCTGAACTGACTAGCAAACATCAAAGGATTGAACCCCAAGGCCCCT  50

seq1  C-TCTGTGTGGTGCCTC-ACGC-TATTCTTCCTAGGTGCAGG--CAGGCA  89
      | |||||||| |||||| |||| ||||||||  |||||||||   |||||
seq2  CTTCTGTGTGATGCCTCAACGCTTATTCTTCTAAGGTGCAGGGCAAGGCA  100

seq1  ACTTCCTCTGTTCCCCTCCCTCAGGGCAGGCTGCCAGGATGCTGTTCCTC  139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCTGTTCCCCTCCCTCAGGGCAGGCTGCCAGGATGCTGTTCCTC  150

seq1  CATTTCTCTGGTGCTGTCATCTCTGTACAAACACATCGATGTGGCACGTC  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGGTGCTGTCATCTCTGTACAAACACATCGATGTGGCACGTC  200

seq1  CTGGGGTCGGCATTTTTCTGCAGTTCGAGTTCCGCCAGCACACAGGTGCC  239
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  CTGGGGTCGGCA-TTTTCTGCAGTTCGAGTTCCGCCAGCACACAGGTG-C  248

seq1  TGAGCGCTCGCTCATGCCGTGGTTTATTCTGTGTGGTTGCTGTGGCCTTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCTCGCTCATGCCGTGGTTTATTCTGTGTGGTTGCTGTGGCCTTC  298

seq1  GTGGTGCAGAAGCTCTGCCTGCCATCCAGCCTCCTTGAAAGACTGCTTGG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGAAGCTCTGCCTGCCATCCAGCCTCCTTGAAAGACTGCTTGG  348

seq1  GTCCTTTCAGCATTCTG-AATCATTCTGAGTTATTGCACACAAAACTGCT  388
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCCTTTCAGCATTCTGAAATCATTCTGAGTTATTGCACACAAAACTGCT  398

seq1  ATGAACATCCACCGTCTGCTTGTGTGAACGTCGTTTTCATACCTCTGGGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATCCACCGTCTGCTTGTGTGAACGTCGTTTTCATACCTCTGGGA  448

seq1  CAAACGCCCAAGAGTGCGGTCGCTGAAGCTCATGGTGACCTGTTTAATTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCCCAAGAGTGCGGTCGCTGAAGCTCATGGTGACCTGTTTAATTT  498

seq1  TATAAGGAATGGGCATCTCATTTCCAGGATGCTGTGACACTACATTCCAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAATGGGCATCTCATTTCCAGGATGCTGTGACACTACATTCCAC  548

seq1  TCAGCACTGTCAGAGAGAATGGACCTCACACACATTCAGGAGAGTCACTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTGTCAGAGAGAATGGACCTCACACACATTCAGGAGAGTCACTG  598

seq1  GTTTGGGGTTTTGTTTGCTATTCTGACATACAAATGGGACAGTCCATGGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGTTTTGTTTGCTATTCTGACATACAAATGGGACAGTCCATGGT  648

seq1  GGTTTTGGCAGTGTCAGAGATGAAGTGTACGCATCTGCCACTCACAACTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGCAGTGTCAGAGATGAAGTGTACGCATCTGCCACTCACAACTC  698

seq1  CTTCAGCAAAAAGGCTACTTGTTTCTTCCCCTCACGATTAAATCCGATGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAAAAAGGCTACTTGTTTCTTCCCCTCACGATTAAATCCGATGG  748

seq1  GTTGTTTCTAACACTGGCTCGTTTCTGACAGTTTCACCAATGTTTTCTCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCTAACACTGGCTCGTTTCTGACAGTTTCACCAATGTTTTCTCC  798

seq1  TCCTCCAGGGGACTGCTCAGAGAGAAAGTTGCCTCTAATCAGGACAAGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAGGGGACTGCTCAGAGAGAAAGTTGCCTCTAATCAGGACAAGCA  848

seq1  TTTTGGGGAATTCCTTCTCCCTTTGGTGGTTGGCAGGGTGGGGATTTTTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGAATTCCTTCTCCCTTTGGTGGTTGGCAGGGTGGGGATTTTTG  898

seq1  CTCCTTTGTTTTGTTTCTGATGTAAAGTCGTAAGGCTTATTCACCTAGCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGTTTTGTTTCTGATGTAAAGTCGTAAGGCTTATTCACCTAGCA  948

seq1  GAGTATGGTGGCATCTTCCTTGAAGCCCGGCACTTGGGATGCAGAAGCAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGTGGCATCTTCCTTGAAGCCCGGCACTTGGGATGCAGAAGCAG  998

seq1  AGGATGTCTGTGAATTC  1005
      |||||||||||||||||
seq2  AGGATGTCTGTGAATTC  1015


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