BAC Information

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BAC

Clone NameB6Ng01-184H11
Chromosome18 (Build37)
Map Location 65,593,935 - 65,700,287
singlet/doubletdoublet
Overlap geneMalt1, LOC638570
Upstream geneLOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l, Alpk2, LOC667816
Downstream geneLOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184H11.bB6Ng01-184H11.g
ACCGA009833GA009834
length1,020867
definitionB6Ng01-184H11.b B6Ng01-184H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,593,935 - 65,594,956)(65,699,423 - 65,700,287)
sequence
gaattcacagccctaatctcaaattttgccctttgtgtttatttttctct
tgctttttttatcggcttgagacctggtcttactttcatagaccaggcta
gcctcaaagttagatgatcctcccccctctgcgttttgagtgccaccatg
ctcagcctcttgccacattttttccctcggcctttacatctttctttaaa
ttacatgagaatttaataatacaaatcatagtaagagtccattctgcatt
gtcctcagagattaggaatattgaaaatgtttttacagttgattaatgat
gtgattattggtgagattattgatgattcccattgaatccttgcatggac
tctagtttccgataactactgaccctgattctgttcaaactgatctaata
tcaggtactttaaatacaggatttctattgccctagctaacctggatctt
gttatctagacagagctagcatcgaacacaaaagagatcttcctctgccc
ttaagtgcacaaattaaaggcatgttccacgctgtttggataaaattgga
tgctgccttcttccagtttagacatactcttagtgtgccaaaatatgtta
attggtggtgagtggaacggctaaactacaaggattggcagaactttcag
aaagcttaaagtatctaaatcctctaagcagagcgtttgagagtgggggt
gtgaaacatgaaccgaggggaaaccatctgttgctgcttgtctgctttgt
agaagatgctctttagttgcttaagcctaccctctcgcagacgatgataa
aatggaaacatattaaaaagatgaatgagagtgtctcccattatctgtct
catcagtctgaattttgaagtgtgcaagaactcatgctttaaatcttagt
gcttttctacctaatctgctcatacgatccttcagtcacgattttgatca
cagatcgttctcagtacaatgagtaatcatctgatattcccagatatatg
tatgtacgctggctattgcc
gaattctgattccctctgtagctctacatttctatctttgtttcttttct
atttggctcaaagggggagcgaggatttaaaacggaagccgaaagttcta
gattaaaaatcttccgttatatgaaaacaaagacctcccaaaagggtgcc
cgtgttttgctccaagaatcccacatctttgaagaagaccgtgttcctaa
accaatgcttagttgtattgacttcagctcctgggggggcctcaaagtaa
agtgtctccaggggtggcaacttcttcccatctgagggaacataattggg
cctaaagtttccattatttggttcttgtcttaataagtgagaaattcctc
cataggcagaaactccccaggttccttgggaaccgctcgcctttggcctg
tctctgggagtgttcacttctaaaataccgcttctggtctgcatgatgtc
tacaaagtgctttaaaatgtggcttcctcttgcttctgaaccacaagcag
agagaacacactgtttcctttctgagaacaatgactagagagaacaagaa
tcatggttatcgggagaggcactgggaaggtgtctgtccaacagttgcta
aagagaaagacattcggaaccttggctagggcagacgatccatgtctgag
gtctcttcacacttctcaaaatttaagctcaagtacagtaactgtgacct
actacatgtgtatctaatacctaaccatacgtttcttttcaaaaaagtac
ttcacaaacttggattaagtcctcacgaagcagtttagtaataactataa
aatacttatcataaatacaagtaacagactatatatacatatatatctat
atatacgggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65593935_65594956
seq2: B6Ng01-184H11.b_38_1057

seq1  GAATTCACAGCCCTAATCTCAAAATTTTGCCCTTTGTGTTTATTTTTCTC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCACAGCCCTAATCTC-AAATTTTGCCCTTTGTGTTTATTTTTCTC  49

seq1  TTTCTTTTTTTATCGGCTTGAGACCAGGTCTTACTTTCATAGACCAGGCT  100
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCTTTTTTTATCGGCTTGAGACCTGGTCTTACTTTCATAGACCAGGCT  99

seq1  AGCCTCAAAGTTATCATGATCCTCCCCCCTCTGCGTTTTGAGTGCCACCA  150
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGCCTCAAAGTTA-GATGATCCTCCCCCCTCTGCGTTTTGAGTGCCACCA  148

seq1  TGCTCAGCCTCTTGCCACATTTTTTCCCTCGGCCTTTACATCTTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTCTTGCCACATTTTTTCCCTCGGCCTTTACATCTTTCTTTA  198

seq1  AATTACATGAGAATTTAATAATACAAATCATAGTAAGAGTCCATTCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGAGAATTTAATAATACAAATCATAGTAAGAGTCCATTCTGCA  248

seq1  TTGTCCTCAGAGATTAGGAATATTGAAAATGTTTTTACAGTTGATTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCAGAGATTAGGAATATTGAAAATGTTTTTACAGTTGATTAATG  298

seq1  ATGTGATTATTGGTGAGATTATTGATGATTCAGATTGAATCGTTGCATGT  350
      |||||||||||||||||||||||||||||||  |||||||| ||||||| 
seq2  ATGTGATTATTGGTGAGATTATTGATGATTCCCATTGAATCCTTGCATGG  348

seq1  ACTCTAGTTTCCAATAACTACTGACCCTGATTCTGTTCAAACTGATCTAA  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTTTCCGATAACTACTGACCCTGATTCTGTTCAAACTGATCTAA  398

seq1  TATCAGGTACTTTAAATACAGGATTTCTATTGCCCTAGCTAACCTGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTACTTTAAATACAGGATTTCTATTGCCCTAGCTAACCTGGATC  448

seq1  TTGTTATCTAGACAGAGCTAGCAGTGAACACAAAAGAGATCTTCCTCTGC  500
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  TTGTTATCTAGACAGAGCTAGCATCGAACACAAAAGAGATCTTCCTCTGC  498

seq1  CCTTAGGTGCAGAAATTAAAGGCATGTTCCACGCTGTTTGGATAAAATTG  550
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGTGCACAAATTAAAGGCATGTTCCACGCTGTTTGGATAAAATTG  548

seq1  GATGCTGCCTTCTTCCAGTTTAGACATACTCTTAGTGTGCCAACATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATGCTGCCTTCTTCCAGTTTAGACATACTCTTAGTGTGCCAAAATATGT  598

seq1  TAATTGGTGGTGAGTGGAACGGCTAAACTACAAGGATTGGCAGAACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGTGGTGAGTGGAACGGCTAAACTACAAGGATTGGCAGAACTTTC  648

seq1  AGAAAGCTTAAAGTATCTAAATCCTCTAAGCAGAGCGCTTGAGAGTGGGG  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAGCTTAAAGTATCTAAATCCTCTAAGCAGAGCGTTTGAGAGTGGGG  698

seq1  CTGTGAAACATGAACCGAGGGGAAACCATCTGTTGCTGCTTGTCTGCAGT  750
       ||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GTGTGAAACATGAACCGAGGGGAAACCATCTGTTGCTGCTTGTCTGCTTT  748

seq1  GTAGAAGATGCTCTTTAGTTGCAGAAGTCCTACCCTCCAGCAGATGATGA  800
      ||||||||||||||||||||||  ||| |||||||||  ||||| |||||
seq2  GTAGAAGATGCTCTTTAGTTGCTTAAG-CCTACCCTCTCGCAGACGATGA  797

seq1  TAAAAATGGAAACATATTAAAAAGATGAATGAGAGTGTCTCCCATTATCT  850
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAATGGAAACATATTAAAAAGATGAATGAGAGTGTCTCCCATTATCT  846

seq1  GTCTCATCAGTCTGAATTTTGAAGTGTGCAAGAATTCATGCTTTTATTTC  900
      |||||||||||||||||||||||||||||||||| |||||| ||||  ||
seq2  GTCTCATCAGTCTGAATTTTGAAGTGTGCAAGAACTCATGC-TTTAAATC  895

seq1  TAAGTGCTTTTCTACCTAATCTCCTAATACTATCCTTCATTCAGGATTTT  950
      | |||||||||||||||||||| || |||| |||||||| ||| ||||||
seq2  TTAGTGCTTTTCTACCTAATCTGCTCATACGATCCTTCAGTCACGATTTT  945

seq1  GAATACAG-TCAAGCTCATTACAATGAGAAAT-ATCTGCTTTTCCCAGAT  998
      ||  |||| ||   |||| ||||||||| ||| ||||| | |||||||||
seq2  GATCACAGATCGTTCTCAGTACAATGAGTAATCATCTGATATTCCCAGAT  995

seq1  ATATGTATGTA-GGTGGCTATTGCC  1022
      ||||||||||| | |||||||||||
seq2  ATATGTATGTACGCTGGCTATTGCC  1020

seq1: chr18_65699423_65700287
seq2: B6Ng01-184H11.g_65_931 (reverse)

seq1  --CACACACACATATATATACATATATATGTATATATAATTTGTTACTTG  48
        ||||||| | |||||||| ||||||||||||||||| | |||||||||
seq2  CACACACACCCGTATATATAGATATATATGTATATATAGTCTGTTACTTG  50

seq1  TAGTTATGATAAGTATTTTATAGTTATTACTAAACTGCCTTGTGAGGACT  98
      || ||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TATTTATGATAAGTATTTTATAGTTATTACTAAACTGCTTCGTGAGGACT  100

seq1  TAATCCAAGTTTGGGAAGTACTTTTTGGAAAAGAAAAGTATGGTTAGGTA  148
      ||||||||||||| |||||||||||| ||||||||| |||||||||||||
seq2  TAATCCAAGTTTGTGAAGTACTTTTTTGAAAAGAAACGTATGGTTAGGTA  150

seq1  TTAGATACACATGTACTAGGTCACAGTTACTGTACTTGAGCTTAAATTTT  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTAGATACACATGTAGTAGGTCACAGTTACTGTACTTGAGCTTAAATTTT  200

seq1  GAGAAGTGTGAAGAGACCACAAACATGGATCGTCTGCCCTAGCCAAGGTT  248
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  GAGAAGTGTGAAGAGACCTCAGACATGGATCGTCTGCCCTAGCCAAGGTT  250

seq1  CCGAATGTCTTTCTCCTTAGCAACTGTTGGACAGACACCTTCCCAGTGCC  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCGAATGTCTTTCTCTTTAGCAACTGTTGGACAGACACCTTCCCAGTGCC  300

seq1  TCTCCCGATAACCATGATTCTTGTTCTCTCTAGTCATTGTTCTCAGAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGATAACCATGATTCTTGTTCTCTCTAGTCATTGTTCTCAGAAAG  350

seq1  GAAACAGTGTGTTCTCTCTGCTTGTGGTTCAGAAGCAAGACGAAGCCACA  398
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAACAGTGTGTTCTCTCTGCTTGTGGTTCAGAAGCAAGAGGAAGCCACA  400

seq1  TTTTAAAGCACTTTGTAGACATCATGCAGACCAGAAGCGGTATTTTAGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGCACTTTGTAGACATCATGCAGACCAGAAGCGGTATTTTAGAA  450

seq1  GTGAACACTCCCAGAGCCAGGCCAAAGGCGAGCGGTTCACAAGGAACCTG  498
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  GTGAACACTCCCAGAGACAGGCCAAAGGCGAGCGGTTCCCAAGGAACCTG  500

seq1  GGGAGTTTCTGCCTCTGGAGGAATTTCTCACTTATTAAGACAAGAACCAA  548
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTCTGCCTATGGAGGAATTTCTCACTTATTAAGACAAGAACCAA  550

seq1  ATAATGGAAACTTTAGGCCCAATTATGTTCCCTCAGATGGGAAGAAGTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAAACTTTAGGCCCAATTATGTTCCCTCAGATGGGAAGAAGTTG  600

seq1  CCAGCCCTGGAGACACTTTACTTTGAGGCCCCGCCAGGAGCTGAAGACAA  648
      ||| |||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CCACCCCTGGAGACACTTTACTTTGAGGCCCCCCCAGGAGCTGAAGTCAA  650

seq1  TACAACTAAGCATTGGCTTAGGAACATGGTCTTCTACAAAGACGTGGGAT  698
      |||||||||||||||| ||||||||| |||||||| |||||| |||||||
seq2  TACAACTAAGCATTGGTTTAGGAACACGGTCTTCTTCAAAGATGTGGGAT  700

seq1  TCTTGGAGCAAAACACGGGCACCCTTTTGGGAGGTCTTTGTTTTCATATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGCAAAACACGGGCACCCTTTTGGGAGGTCTTTGTTTTCATATA  750

seq1  ACGGAAGATTTTTAATCTAGAACTTTCTGCTTCTGTTTTAAATCCTAGCT  798
      ||||||||||||||||||||||||||| ||||| |||||||||||| |||
seq2  ACGGAAGATTTTTAATCTAGAACTTTCGGCTTCCGTTTTAAATCCTCGCT  800

seq1  CCCCCTTTGAGACTTATAGAAAAGAAACAAAGATAGAAACGTAGAGCTAC  848
      ||||||||||| |  |||||||||||||||||||||||| ||||||||||
seq2  CCCCCTTTGAGCCAAATAGAAAAGAAACAAAGATAGAAATGTAGAGCTAC  850

seq1  AGAGGGAAACAGAATTC  865
      |||||||| ||||||||
seq2  AGAGGGAATCAGAATTC  867