BAC Information

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BAC

Clone NameB6Ng01-185M12
Chromosome18 (Build37)
Map Location 16,875,968 - 16,877,100
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185M12.bB6Ng01-185M12.g
ACCGA010800GA010801
length1,2121,120
definitionB6Ng01-185M12.b B6Ng01-185M12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaaaaccatccagggtctaaaaatggaagtagagacaataaa
gaaatcactaagggagacaaccctggacatagagaagctaggaaacagat
caggagtcatagacacaagcatcaccaacaaatgcaagggatagaagaga
gaatctcaggtgcagaagataccatggaaaacattgacacaacaagtcga
agaaaatgcaaaaggtaaaaatctcctaacccaaaacatccagaaaatgc
aggaaacaataagttgaccaaacctaaggataatagatataaaagagagc
aaagattcccaaattaaaaggccagtaattatcttcaaaaaattattgaa
gaaaacttccctaacctaaagaaagagatacctaattaacatacaagaag
cctacagaactccaaaaagattgcaccagaaaaggaattcctcccttcaa
ataatagtcaaaacaccaaatccacaaaacaaagaatagtaaaagcagta
agagaaaaatgtcaagtaacatataagggcagacctatcagaattatact
agacttctcaccagagacgatgaaagctagaagatactgggcagatatca
tgcagaccctaagagaacacaaatgccagcccaggctactatacccagca
aaactctcaattaacataaatgaagaaatcaagatattccattacaaaac
aaaatttaaatgatatctttgcacaaatcccgccctacaaaggataatag
atggaaaactccaacacaggaagggaaattaaaccctagaaaatccagat
gcagcaagtggggtgattctgatctgactatcacactgtttcatgagcag
agaaaataacttagtattgcaaagatggtaaacttttacagtctgtgggt
ttaagatccacttttattaaagatcacattatagttattcatttaaagca
actctagatgagctatgaaagggcattcctagaactgactgtgtataaaa
taatttcaaacccaagagttggtgatcaaattgaaccttcaggcatatgt
aagtactaccgaggtgagaaggtgacaaccaaggccaatttaggtggaat
aatgtcctgggaagatatcaatagcccagcagcttgtgacctctcacctc
tgcatcaactctcttattatttgctgtaagttgggctacccacaaaaatc
caaccttcaatg
gaattcaagcactgattttgtataaacaaaacaaaaattcacagaagtat
aaaagtcccccacatttgttaatatttattatgtacttattagtactatg
tactaggacagtacaaacagaaataattgcttagaatttaatatgctttt
ggatgcatgtggattacatcagcctcaataacaactacgttaattaaaaa
tataaacagcaagacacatgggggcagtgataagcaggcagttctgtgca
ctgagtggtgattctaagacctcttaaaggaaaacaaccttccatccatc
tccaggatgtcatccgtgacatatatacaaaggctgaatacggccaagta
gtattctctgagtcagtggctctcaaccctcctaatactgtgaccctttt
atacagttcttcatgttctggcaacctccaaccataaaattatttccctt
gctacttcataactgtatttctgctgctgttatataaatatctgagtctt
ctgatggtcttaggtgacccatgtaaaagtgtgggttgatcccccaaagg
ggtgacgacgcacagattgagaaccactggtctaggaggacaataaagga
ccagagtttccctgaggtggtgtccacatacatctgcactggtgcctccc
cataaccttcttcccacagagcatgacttctcagcttcaaaatcacagac
aatatctatgttcttctcccaggttgccttatgctgcattccaggctgtg
tatgcacattccctgctaattccataataagaattcagtagaagctaaga
cacaacttcagaacaagagacaaaattttctctttgttattgtacagtac
agcactgattataagcctccataatatatcaaagctataacatgtatctt
tttgggtttgggatgttttttttttcccttctcagtctagtaatagagat
gaaacctttaattactttgtcaattttcagtgtatcacagaggattgaaa
atatatttacaacccaatatccagtatgctacctctggagagttgtgtga
gtttacatttattgcataggtaacgtcacatagctcttagaaaacggttc
aggatgataaaagtctagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16875968_16877100
seq2: B6Ng01-185M12.g_65_1184

seq1  GAATTCAAGCACTGATTTTGTATAAACAAAACAAAAATTCACAGAAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCACTGATTTTGTATAAACAAAACAAAAATTCACAGAAGTAT  50

seq1  AAAAGTCCCCCACATTTGTTAATATTTATTATGTACTTATTAGTACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCCCACATTTGTTAATATTTATTATGTACTTATTAGTACTATG  100

seq1  TACTAGGACAGTACAAACAGAAATAATTGCTTAGAATTTAATATGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGACAGTACAAACAGAAATAATTGCTTAGAATTTAATATGCTTTT  150

seq1  GGATGCATGTGGATTACATCAGCCTCAATAACAACTACGTTAATTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATGTGGATTACATCAGCCTCAATAACAACTACGTTAATTAAAAA  200

seq1  TATAAACAGCAAGACACATGGGGGCAGTGATAAGCAGGCAGTTCTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAGCAAGACACATGGGGGCAGTGATAAGCAGGCAGTTCTGTGCA  250

seq1  CTGAGTGGTGATTCTAAGACCTCTTAAAGGAAAACAACCTTCCATCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGTGATTCTAAGACCTCTTAAAGGAAAACAACCTTCCATCCATC  300

seq1  TCCAGGATGTCATCCGTGACATATATACAAAGGCTGAATACGGCCAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGATGTCATCCGTGACATATATACAAAGGCTGAATACGGCCAAGTA  350

seq1  GTATTCTCTGAGTCAGTGGCTCTCAACCCTCCTAATACTGTGACCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTGAGTCAGTGGCTCTCAACCCTCCTAATACTGTGACCCTTTT  400

seq1  ATACAGTTCTTCATGTTCTGGCAACCTCCAACCATAAAATTATTTCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCTTCATGTTCTGGCAACCTCCAACCATAAAATTATTTCCCTT  450

seq1  GCTACTTCATAACTGTATTTCTGCTGCTGTTATATAAATATCTGAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTCATAACTGTATTTCTGCTGCTGTTATATAAATATCTGAGTCTT  500

seq1  CTGATGGTCTTAGGTGACCCATGTAAAAGTGTGGGTTGATCCCCCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGTCTTAGGTGACCCATGTAAAAGTGTGGGTTGATCCCCCAAAGG  550

seq1  GGTGACGACGCACAGATTGAGAACCACTGGTCTAGGAGGACAATAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACGACGCACAGATTGAGAACCACTGGTCTAGGAGGACAATAAAGGA  600

seq1  CCAGAGTTTCCCTGAGGTGGTGTCCACATACATCTGCACTGGTGCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTTCCCTGAGGTGGTGTCCACATACATCTGCACTGGTGCCTCCC  650

seq1  CATAACCTTCTTCCCACAGAGCATGACTTCTCAGCTTCAAAATCACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTTCTTCCCACAGAGCATGACTTCTCAGCTTCAAAATCACAGAC  700

seq1  AATATCTATGTTCTTCTCCCAGGTTGCCTTATGCTGCATTCCAGGCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATGTTCTTCTCCCAGGTTGCCTTATGCTGCATTCCAGGCTGTG  750

seq1  TATGCACATTCCCTGCTAATTCCATAATAAGAATTCAGTAGAAGCTAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATTCCCTGCTAATTCCATAATAAGAATTCAGTAGAAGCTAAGA  800

seq1  CACAACTTCAGAACAAGAGAC-AAATTTTCTCTTTGTTATTGTACAGTAC  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAACTTCAGAACAAGAGACAAAATTTTCTCTTTGTTATTGTACAGTAC  850

seq1  AGCACTGATTATAAGCCTCCATAATATATCAAAGCTATAACATGTATCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGATTATAAGCCTCCATAATATATCAAAGCTATAACATGTATCTT  900

seq1  TTTGGTTTGGGAATGTTTTTTTTTTCCC-TCTCAGTCTAGTAATAGAGAT  948
      ||||| || || |||||||||||||||| |||||||||||||||||||||
seq2  TTTGGGTTTGGGATGTTTTTTTTTTCCCTTCTCAGTCTAGTAATAGAGAT  950

seq1  GAAACCTTTAATTACTTTGTCCAATTTTCAGTGTATCACAAGAGGATTGA  998
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  GAAACCTTTAATTACTTTGT-CAATTTTCAGTGTATCAC-AGAGGATTGA  998

seq1  AAATATATTTACAACCCAATATCCAGTATGCTACCCTTCTGGAGAGTTTG  1048
      |||||||||||||||||||||||||||||||||||  ||||||||| |||
seq2  AAATATATTTACAACCCAATATCCAGTATGCTACC--TCTGGAGAG-TTG  1045

seq1  TGTTGAGTTTACATTTAATTGCATAGGGTAAAGGTCACATAGCTTCTAGG  1098
      || ||||||||||||| ||||||||||   || |||||||||||  ||| 
seq2  TG-TGAGTTTACATTT-ATTGCATAGG--TAACGTCACATAGCTCTTAG-  1090

seq1  AAAAAGGGGTCAAGATGGAAAAAAAAAGTCTAGAT  1133
       |||| || ||| ||||    | ||||||||||||
seq2  -AAAACGGTTCAGGATG----ATAAAAGTCTAGAT  1120