BAC Information

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BAC

Clone NameB6Ng01-185O17
Chromosome18 (Build37)
Map Location 86,534,229 - 86,632,219
singlet/doubletdoublet
Overlap geneNeto1
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402
Downstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185O17.bB6Ng01-185O17.g
ACCGA010901GA010902
length1,1371,109
definitionB6Ng01-185O17.b B6Ng01-185O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,631,094 - 86,632,219)(86,534,229 - 86,535,332)
sequence
gaattcacaaattgtataaaagataaatttagctctctgatcatccaggt
gagtgtttatgactttatattgcaaataccagttatttctttaaaattct
ttcgactatcaaggtttgaatccagggcctgccacaggctaagcaggtac
tctatcatcaagccccctttgcctttgtttttgagatagggtcttactaa
cttgtcacgtctagtaaacacactccctctgtagtcagagctaaccttga
actaaacttgcaagcaacaggggaaaaaaaaggaaaagaaaaccagtgtc
taaattgttgcaaagcaaaacattttttaaaagatttgctcagatgcaaa
gagacttgtaactttcagagctgtgaataggactgtgctttcttccctcc
cattacataaatatgaggtataatgtatatatacttcaagaagtactttt
ttttcatacacaagtacttcttagcttccttcaaattctaaagagaaaag
acagtagcaatagcattattttttcttaacctgaataccccatcaccaag
ttctaaggaactgttcttagtattcccatcactgaataccagaacagagt
gagttctgtcatggactcactgtcttttccctacctaggcttctgctcat
gtctgttcacctatcttaccttcccacatacttgcaaattccatttctaa
catgtaaattcagtcgcatctcctttctgttaaccttccttgatattact
aagcatttggggtaaagtttccattctcagcaaagacccacagaaattag
accttgcagacttgcctccctccacacccattggctcattagatcacatg
ctgctaagtttattcataagggtttgctgttttctctgcacataaagtct
ttgatgtgctccctgtagtcttgtgtggctttctactgtctagttgctat
cctgctgtttctcatgcccttctattgagaccctggctactactgtcttt
acagttaaggtagtcttttcccttgtatttttccttatcacagctttgga
atcagatctttttgccttggcctgaatttcttttacaatattatgttctt
tagtactaaatgtagaaaacatgaagcaataagtata

gaattcaagatacatacatgacattattttgttcttcaggcaaaatgcat
acattagctgttaatagtgctttaaaacatcatgcttcatataacattta
atttaatccagttctgcttgcagtgatagattttaattttacatttgcta
tcccagaagaatacatctaccctctaagtactctgacccatatgtgtgga
gtaatgaatctcaagccattgcctaaaataaaagaggacgagtcaaaggt
atattaagaatatattacaaaaaaagaaagccttactgctaagggtaaaa
agaaaaatatattgtatctttataataagctatgtttgttattgagtaaa
atccttcaaaatggataagcagatccataaatgtgaattatagacaaata
aaaattaggtattgtatttcaacccatgaccattaatcagaccttttatc
tatctgtctatctgcctgtctctttctgtcatctgtcatctaaattccat
ttatctatcatctttctctcattttcttcaccattatcttatcaaccact
tttcctttgttgaacctttatctaagtttaaggcttatttatttcattat
atgtgtatgactgttttgtctgcatagatatttgtgcactgcatgtgtgc
ctagtacccacagaaaccacaagaaggtggtttcaaatctcctggaaaag
cagctattgataattgtagatcagtgtgtaaatgttaggaaccaaattca
cttcctccccaagaagagcaaatattctttaaccactcagacatcgcccc
accctgccttcctccttctgcattttaatggatcaaattttccaggtgat
atttttgttagtgtgttcccaaagcaatctgcactgtgacaaaatatttt
tgtttaagttagccttgtgcaaaaacacactgtggctgtgaagtgttatt
ttactacaggtatactgggctcttttgagttatcctgaccttctgtcact
gcttacaaatctattcctgtttattcataaagatctttaaaaactcagaa
gatcaaatttataacgaaaattgtaaaagacttatagtgctagaggcctt
ctaaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86631094_86632219
seq2: B6Ng01-185O17.b_49_1185 (reverse)

seq1  TATACTTATT-CCTCATGTTTTCTACATTTAGTACTAA--GACAT-ATA-  45
      |||||||||| | |||||||||||||||||||||||||   |||| ||| 
seq2  TATACTTATTGCTTCATGTTTTCTACATTTAGTACTAAAGAACATAATAT  50

seq1  TGT-AAAGAAA-TCA-GCCAAG--CAAAAGATCTGA-TCCCAAGCTGTTG  89
      ||| ||||||| ||| ||||||   ||||||||||| ||| |||||| ||
seq2  TGTAAAAGAAATTCAGGCCAAGGCAAAAAGATCTGATTCCAAAGCTG-TG  99

seq1  ATAAGG-AAAATACAAAGGAAAAGACTACCTAAACTGTAAAGACAGTAGT  138
      |||||| ||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATAAGGAAAAATACAAGGGAAAAGACTACCTTAACTGTAAAGACAGTAGT  149

seq1  AGCCAGGGTCTCAATAGAAGGGCATGAGAAACAGCAGGATAGCAACTAGA  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGTCTCAATAGAAGGGCATGAGAAACAGCAGGATAGCAACTAGA  199

seq1  CAGTAGAAAGCCACACAAGACTACAGGGAGCACATCAAAGACTTTATGTG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAGCCACACAAGACTACAGGGAGCACATCAAAGACTTTATGTG  249

seq1  CAGAGAAAACAGCAAACCTTTATGAATTAACTTAGCAGCATGTGATCTAA  288
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CAGAGAAAACAGCAAACCCTTATGAATAAACTTAGCAGCATGTGATCTAA  299

seq1  TGAGCCAATGGGTGTGGAGGGAGGCAAGTCTGCAAGGTCTAATTTCTGTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAATGGGTGTGGAGGGAGGCAAGTCTGCAAGGTCTAATTTCTGTG  349

seq1  GGTCTTTGCTGAGAATGGAAACTTTACCCCAAATGCTTAGTAATATCAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGCTGAGAATGGAAACTTTACCCCAAATGCTTAGTAATATCAAG  399

seq1  GAAGGTTAACAGAAAGGAGATGCGACTGAATTTACATGTTAGAAATGGAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTAACAGAAAGGAGATGCGACTGAATTTACATGTTAGAAATGGAA  449

seq1  TTTGCAAGTATGTGGGAAGGTAAGATAGGTGAACAGACATGAGCAGAAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGTATGTGGGAAGGTAAGATAGGTGAACAGACATGAGCAGAAGC  499

seq1  CTAGGTAGGGAAAAGACAGTGAGTCCATGACAGAACTCACTCTGTTCTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGGGAAAAGACAGTGAGTCCATGACAGAACTCACTCTGTTCTGG  549

seq1  TATTCAGTGATGGGAATACTAAGAACAGTTCCTTAGAACTTGGTGATGGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTGATGGGAATACTAAGAACAGTTCCTTAGAACTTGGTGATGGG  599

seq1  GTATTCAGGTTAAGAAAAAATAATGCTATTGCTACTGTCTTTTCTCTTTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGGTTAAGAAAAAATAATGCTATTGCTACTGTCTTTTCTCTTTA  649

seq1  GAATTTGAAGGAAGCTAAGAAGTACTTGTGTATGAAAAAAAAGTACTTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAAGGAAGCTAAGAAGTACTTGTGTATGAAAAAAAAGTACTTCT  699

seq1  TGAAGTATATATACATTATACCTCATATTTATGTAATGGGAGGGAAGAAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATATATACATTATACCTCATATTTATGTAATGGGAGGGAAGAAA  749

seq1  GCACAGTCCTATTCACAGCTCTGAAAGTTACAAGTCTCTTTGCATCTGAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCCTATTCACAGCTCTGAAAGTTACAAGTCTCTTTGCATCTGAG  799

seq1  CAAATCTTTTAAAAAATGTTTTGCTTTGCAACAATTTAGACACTGGTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTTAAAAAATGTTTTGCTTTGCAACAATTTAGACACTGGTTTT  849

seq1  CTTTTCCTTTTTTTTCCCCTGTTGCTTGCAAGTTTAGTTCAAGGTTAGCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTTTTTTTCCCCTGTTGCTTGCAAGTTTAGTTCAAGGTTAGCT  899

seq1  CTGACTACAGAGGGAGTGTGTTTACTAGACGTGACAAGTTAGTAAGACCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTACAGAGGGAGTGTGTTTACTAGACGTGACAAGTTAGTAAGACCC  949

seq1  TATCTCAAAAACAAAGGCAAAGGGGGCTTGATGATAGAGTACCTGCTTAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAAAACAAAGGCAAAGGGGGCTTGATGATAGAGTACCTGCTTAG  999

seq1  CCTGTGGCAGGCCCTGGATTCAAACCTTGATAGTCGAAAGAATTTTAAAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGCAGGCCCTGGATTCAAACCTTGATAGTCGAAAGAATTTTAAAG  1049

seq1  AAATAACTGGTATTTGCAATATAAAGTCATAAACACTCACCTGGATGATC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGGTATTTGCAATATAAAGTCATAAACACTCACCTGGATGATC  1099

seq1  AGAGAGCTAAATTTATCTTTTATACAATTTGTGAATTC  1126
      ||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTAAATTTATCTTTTATACAATTTGTGAATTC  1137


seq1: chr18_86534229_86535332
seq2: B6Ng01-185O17.g_68_1176

seq1  GAATTCAAGATACATACATGACATTATTTTGTTCTTCAGGCAAAATGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATACATACATGACATTATTTTGTTCTTCAGGCAAAATGCAT  50

seq1  ACATTAGCTGTTAATAGTGCTTTAAAACATCATGCTTCATATAACATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCTGTTAATAGTGCTTTAAAACATCATGCTTCATATAACATTTA  100

seq1  ATTTAATCCAGTTCTGCTTGCAGTGATAGATTTTAATTTTACATTTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCCAGTTCTGCTTGCAGTGATAGATTTTAATTTTACATTTGCTA  150

seq1  TCCCAGAAGAATACATCTACCCTCTAAGTACTCTGACCCATATGTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAGAATACATCTACCCTCTAAGTACTCTGACCCATATGTGTGGA  200

seq1  GTAATGAATCTCAAGCCATTGCCTAAAATAAAAGAGGACGAGTCAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAATCTCAAGCCATTGCCTAAAATAAAAGAGGACGAGTCAAAGGT  250

seq1  ATATTAAGAATATATTACAAAAAAAGAAAGCCTTACTGCTAAGGGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAATATATTACAAAAAAAGAAAGCCTTACTGCTAAGGGTAAAA  300

seq1  AGAAAAATATATTGTATCTTTATAATAAGCTATGTTTGTTATTGAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATATATTGTATCTTTATAATAAGCTATGTTTGTTATTGAGTAAA  350

seq1  ATCCTTCAAAATGGATAAGCAGATCCATAAATGTGAATTATAGACAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAAAATGGATAAGCAGATCCATAAATGTGAATTATAGACAAATA  400

seq1  AAAATTAGGTATTGTATTTCAACCCATGACCATTAATCAGACCTTTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGGTATTGTATTTCAACCCATGACCATTAATCAGACCTTTTATC  450

seq1  TATCTGTCTATCTGCCTGTCTCTTTCTGTCATCTGTCATCTAAATTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCTATCTGCCTGTCTCTTTCTGTCATCTGTCATCTAAATTCCAT  500

seq1  TTATCTATCATCTTTCTCTCATTTTCTTCACCATTATCTTATCAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCATCTTTCTCTCATTTTCTTCACCATTATCTTATCAACCACT  550

seq1  TTTCCTTTGTTGAACCTTTATCTAAGTTTAAGGCTTATTTATTTCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGTTGAACCTTTATCTAAGTTTAAGGCTTATTTATTTCATTAT  600

seq1  ATGTGTATGACTGTTTTGTCTGCATAGATATTTGTGCACTGCATGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGACTGTTTTGTCTGCATAGATATTTGTGCACTGCATGTGTGC  650

seq1  CTAGTACCCACAGAAACCACAAGAAGGTGGTTTCAAATCTCCTGGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACCCACAGAAACCACAAGAAGGTGGTTTCAAATCTCCTGGAAAAG  700

seq1  CAGCTATTGATAATTGTAGATCAGTGTGTAAATGTTAGGAACCAAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTGATAATTGTAGATCAGTGTGTAAATGTTAGGAACCAAATTCA  750

seq1  CTTCCTCCCCAAGAAGAGCAAATATTC-TTAACCACTCAGACATCGCCCC  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTCCTCCCCAAGAAGAGCAAATATTCTTTAACCACTCAGACATCGCCCC  800

seq1  ACCCTGCCTTCCTCCTTCTGCATTTTAATGGATCAAA-TTTCCAGGTGAT  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCCTGCCTTCCTCCTTCTGCATTTTAATGGATCAAATTTTCCAGGTGAT  850

seq1  A-TTTTGTTAGTGTGTTCCCAAAGCAATCTGCACTGTGACAAAATATTTT  897
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTAGTGTGTTCCCAAAGCAATCTGCACTGTGACAAAATATTTT  900

seq1  --GTTAAGTTAGCCTTGTGC-AAAACACACTGTGGCTGTGAAGTGTTATT  944
         ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGTTTAAGTTAGCCTTGTGCAAAAACACACTGTGGCTGTGAAGTGTTATT  950

seq1  TTACTACA-GTATACT-GGCTCTTTTGAGTTATCCTGACCTTCTGTCACT  992
      |||||||| ||||||| |||||||||||||||||||||||||||||||| 
seq2  TTACTACAGGTATACTGGGCTCTTTTGAGTTATCCTGACCTTCTGTCAC-  999

seq1  TGCTTACAAATCTATTCCCTGTTTATTCATTAAAGAATCTTTAAAAACTC  1042
      |||||||||||||||| |||||||||||| ||||| ||||||||||||||
seq2  TGCTTACAAATCTATT-CCTGTTTATTCA-TAAAG-ATCTTTAAAAACTC  1046

seq1  AGAAGATCAAATTTATAAAGGAAAATGTAAAAGAC-TATAGTGCTAGAAG  1091
      |||||||||||||||||| | ||| |||||||||| |||||||||||| |
seq2  AGAAGATCAAATTTATAACGAAAATTGTAAAAGACTTATAGTGCTAGAGG  1096

seq1  CTTTCTAAAATAT  1104
      | |||||||||||
seq2  CCTTCTAAAATAT  1109


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