BAC Information

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BAC

Clone NameB6Ng01-188F04
Chromosome18 (Build37)
Map Location 22,493,504 - 22,620,548
singlet/doubletdoublet
Overlap geneLOC100040547, Asxl3
Upstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708
Downstream geneNol4, LOC100040579, LOC665797, Dtna
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188F04.bB6Ng01-188F04.g
ACCGA012650GA012651
length1,1181,186
definitionB6Ng01-188F04.b B6Ng01-188F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,493,504 - 22,494,619)(22,619,368 - 22,620,548)
sequence
gaattcctaaaactcaataataaaacaacaaattataataaaaagttagg
taaatgttttaaatataaattttactgaagcataaggtatcagtttggaa
acatgtttaaatgagattcaccaatttgaaaacttaaacatacacaacat
aaaacagtaatttcacttgtgggtatttaccaaggaaaatgaaaacatat
gtccacataaatatttgtgcacaaatgttctcagtactatttataatcat
ctgaaagtagatacattgtctggtgttgcatagacgtataattatagata
gaatactacttataaataaaaagaaacaaactagcaatgcctacaatagc
attaataaatgaaagctatatcaatatgttgttttaagtgagtgaactca
tgtgaggaagactattcctatgtggtcctgtaccctggtgataggagcta
gttttgacttcgagattggtcaaaggattctaactctagataaaatttat
agttgaatacatcatacattcacatatataataattacagtatctcaatt
tgccatattcaatttgtttaaatcacaaactactaccaataaaatgtgca
aagctttagtgaaatgcagatcagaggagagagaacattgatagcctttt
atataagaaaattaatttgttaccaaaagcctttatgcacacaattgtaa
ttttacttttatgaagtttacagcaaattctactcattatttaaggaaaa
aaattaacattctagtaaaacatcatttcaacaaaagtaggaataaatat
tacaacttacacaatgaattcattactattatattcacacattttacatg
cattaaaagaaaattaaagcttagttttgcttctgagcattaggattaaa
ccatcaacaaaataacaaagacagcaacttctcaaagtatctttatatta
aatataataaattttattattgcaaacatggttaaactgtaacctgcata
ttatgtttacagagtaggaaaaaccggtatcgttgaagaaatgcttttaa
taataatttaacatcttcatgctgagaagaagcagtaagaactgtaggtt
ttccttagaaaagagaaa

gaattcaaagtaaaataatgccagtgtttataaaaatgcttctcaactga
tttaataattaaatttcctattttagagtgggagagaaaaaaagtttgaa
aatttatgagtttaaagcccaagtcatgaattaaaaaaaaatcaatcatt
gaataaaaattcaacaaaagagttaattatataaaaaataagtagagatc
aatgtgttagaaagagtaatgatatctatcaacataaaaaatagcttttt
cttaaaattaagctaatgaaatcagaaattcctgagaagaaactgcataa
acataaatagtaataaaaataaaacagggacatggttcttgatacatatc
tcatttaatgggcagataaaattaaaagcatatttttaaaggaaaaatag
agtgttttgaatgtttgatactcactaaataaagataaactgatttgttg
tatgcacatatttctgtgtagggggagtaagaatgtacgtgggtgcatgt
gtgcaggttaagtgcatctgtgggtagctagaggtgacgcagggagtcct
cgactgctctcacctaattgttctaggacagagtctctcagtgagggaaa
gaaatcagtaattggctagactccacgacagtgagccccacagatgcttc
tgggaacagggattacatgtgcacgccttcatggctagctttttacatga
gtgttggaaaccaaattcaggtcctcaggctggtgcaagaagtgttatat
ctactcagccaaatccccaagccctaaactatgttaagttgataaatctc
ctaagttaactttaagatagaaacaaagttaagcaaaaagaaaatgttgt
cagtaagctttctttcacatacatataattaacaaaatataaataattta
ataactaatttaatgtagctatagataactctacctttgtcctgaactct
cttaacgaaagggagaaaaggggaggaggaaccccccaccatccccaggg
gcaacacagtcacttatgactaaatcaaataaagatgtgtgtccaaactg
tcactaagacaaagctatgtttttatagtctcgagaaaaagactgaacaa
cattaactaaatttggcctctaacagaagaatgtttcactcaattgaagt
atccttacacatgtactctaattggccttaaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_22493504_22494619
seq2: B6Ng01-188F04.b_45_1162

seq1  GAATTCCTAAAACTCAATAATAAAACAACAAATTATAATAAAAAGTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAAACTCAATAATAAAACAACAAATTATAATAAAAAGTTAGG  50

seq1  TAAATGTTTTAAATATAAATTTTACTGAAGCATAAGGTATCAGTTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTTTAAATATAAATTTTACTGAAGCATAAGGTATCAGTTTGGAA  100

seq1  ACATGTTTAAATGAGATTCACCAATTTGAAAACTTAAACATACACAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTAAATGAGATTCACCAATTTGAAAACTTAAACATACACAACAT  150

seq1  AAAACAGTAATTTCACTTGTGGGTATTTACCAAGGAAAATGAAAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAATTTCACTTGTGGGTATTTACCAAGGAAAATGAAAACATAT  200

seq1  GTCCACATAAATATTTGTGCACAAATGTTCTCAGTACTATTTATAATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATAAATATTTGTGCACAAATGTTCTCAGTACTATTTATAATCAT  250

seq1  CTGAAAGTAGATACATTGTCTGGTGTTGCATAGACGTATAATTATAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTAGATACATTGTCTGGTGTTGCATAGACGTATAATTATAGATA  300

seq1  GAATACTACTTATAAATAAAAAGAAACAAACTAGCAATGCCTACAATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTACTTATAAATAAAAAGAAACAAACTAGCAATGCCTACAATAGC  350

seq1  ATTAATAAATGAAAGCTATATCAATATGTTGTTTTAAGTGAGTGAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAATGAAAGCTATATCAATATGTTGTTTTAAGTGAGTGAACTCA  400

seq1  TGTGAGGAAGACTATTCCTATGTGGTCCTGTACCCTGGTGATAGGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGAAGACTATTCCTATGTGGTCCTGTACCCTGGTGATAGGAGCTA  450

seq1  GTTTTGACTTCGAGATTGGTCAAAGGATTCTAACTCTAGATAAAATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACTTCGAGATTGGTCAAAGGATTCTAACTCTAGATAAAATTTAT  500

seq1  AGTTGAATACATCATACATTCACATATATAATAATTACAGTATCTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATACATCATACATTCACATATATAATAATTACAGTATCTCAATT  550

seq1  TGCCATATTCAATTTGTTTAAATCACAAACTACTACCAATAAAATGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTCAATTTGTTTAAATCACAAACTACTACCAATAAAATGTGCA  600

seq1  AAGCTTTAGTGAAATGCAGATCAGAGGAGAGAGAACATTGATAGCCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTAGTGAAATGCAGATCAGAGGAGAGAGAACATTGATAGCCTTTT  650

seq1  ATATAAGAAAATTAATTTGTTACCAAAAGCCTTTATGCACACAATTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAAAATTAATTTGTTACCAAAAGCCTTTATGCACACAATTGTAA  700

seq1  TTTTACTTTTATGAAGTTTACAGCAAATTCTACTCATTATTTAAGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTATGAAGTTTACAGCAAATTCTACTCATTATTTAAGGAAAA  750

seq1  AAATTAACATTCTAGTAAAACATCATTTCAACAAAAGTAGGAATAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATTCTAGTAAAACATCATTTCAACAAAAGTAGGAATAAATAT  800

seq1  TACAACTTACACAATGAATTCATTACTATTATATTCACACATTTTACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTACACAATGAATTCATTACTATTATATTCACACATTTTACATG  850

seq1  CATTAAAAGAAAATTAAAGCTTAGTTTTGCTTCTGAGCATTAGGATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGAAAATTAAAGCTTAGTTTTGCTTCTGAGCATTAGGATTAAA  900

seq1  CCATCAACAAAATAACAAAGACAGCAACTTCTCAAAGTATCTTTATATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACAAAATAACAAAGACAGCAACTTCTCAAAGTATCTTTATATTA  950

seq1  AATATAATAAATTTTATTATTGCAAACATGGTTAAACTGTAACCTGCATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATAAATTTTATTATTGCAAACATGGTTAAACTGTAACCTGCATA  1000

seq1  TTATGTTTACAGAGTAGGAAAAAACCGTATCGTTTGAAGAAATGCTTTTA  1050
      ||||||||||||||||||||||| | |||||| |||||||||||||||||
seq2  TTATGTTTACAGAGTAGGAAAAACCGGTATCG-TTGAAGAAATGCTTTTA  1049

seq1  AT-ATAATTTAACACCTTCATGCTGAGAAG-AGCAGTAAGAACTGTTAGT  1098
      || ||||||||||| ||||||||||||||| |||||||||||||||  ||
seq2  ATAATAATTTAACATCTTCATGCTGAGAAGAAGCAGTAAGAACTGTAGGT  1099

seq1  TTTCC-TAGAAAAGAGAAA  1116
      ||||| |||||||||||||
seq2  TTTCCTTAGAAAAGAGAAA  1118


seq1: chr18_22619368_22620548
seq2: B6Ng01-188F04.g_65_1250 (reverse)

seq1  GTTCTT--AAGCCAATTAAGAGTACATGTGTAAGGATAATTACAATGGAA  48
      ||||||  | ||||||| |||||||||||||||||||| || |||| || 
seq2  GTTCTTTAAGGCCAATT-AGAGTACATGTGTAAGGATACTT-CAATTGAG  48

seq1  TTAAACATTC-TCTGTAAGAG--CAAATTTAGTTAATG-TGTTCAGTC-T  93
      | |||||||| ||||| ||||  ||||||||||||||| ||||||||| |
seq2  TGAAACATTCTTCTGTTAGAGGCCAAATTTAGTTAATGTTGTTCAGTCTT  98

seq1  TTTCTCGAGAATTATAAAACATAGCTTTGTCTTAGGTGGACAGTTTGGAC  143
      |||||||||| |   ||||||||||||||||||||   ||||||||||||
seq2  TTTCTCGAGACTATAAAAACATAGCTTTGTCTTAG--TGACAGTTTGGAC  146

seq1  ACACATCTTTATTTGATTTAGTCATAAGTGACTGTG-TGCCCCTGGGGAT  192
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACACATCTTTATTTGATTTAGTCATAAGTGACTGTGTTGCCCCTGGGGAT  196

seq1  GGT-GGGGGTTCCTCCTCCCCTTTTTCTCCTTTCGTTAAGAGAGTTCAGG  241
      ||| |||||||||||||||||||||   ||||||||||||||||||||||
seq2  GGTGGGGGGTTCCTCCTCCCCTTTTCTCCCTTTCGTTAAGAGAGTTCAGG  246

seq1  ACAAAGGTAGAGTTATCTATAGCTACATTAAATTAGTTATTAAATTATTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTAGAGTTATCTATAGCTACATTAAATTAGTTATTAAATTATTT  296

seq1  ATATTTTGTTAATTATATGTATGTGAAAGAAAGCTTACTGACAACATTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTTAATTATATGTATGTGAAAGAAAGCTTACTGACAACATTTT  346

seq1  CTTTTTGCTTAACTTTGTTTCTATCTTAAAGTTAACTTAGGAGATTTATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCTTAACTTTGTTTCTATCTTAAAGTTAACTTAGGAGATTTATC  396

seq1  AACTTAACATAGTTTAGGGCTTGGGGATTTGGCTGAGTAGATATAACACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACATAGTTTAGGGCTTGGGGATTTGGCTGAGTAGATATAACACT  446

seq1  TCTTGCACCAGCCTGAGGACCTGAATTTGGTTTCCAACACTCATGTAAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACCAGCCTGAGGACCTGAATTTGGTTTCCAACACTCATGTAAAA  496

seq1  AGCTAGCCATGAAGGCGTGCACATGTAATCCCTGTTCCCAGAAGCATCTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCCATGAAGGCGTGCACATGTAATCCCTGTTCCCAGAAGCATCTG  546

seq1  TGGGGCTCACTGTCGTGGAGTCTAGCCAATTACTGATTTCTTTCCCTCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCACTGTCGTGGAGTCTAGCCAATTACTGATTTCTTTCCCTCAC  596

seq1  TGAGAGACTCTGTCCTAGAACAATTAGGTGAGAGCAGTCGAGGACTCCCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGACTCTGTCCTAGAACAATTAGGTGAGAGCAGTCGAGGACTCCCT  646

seq1  GCGTCACCTCTAGCTACCCACAGATGCACTTAACCTGCACACATGCACCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCACCTCTAGCTACCCACAGATGCACTTAACCTGCACACATGCACCC  696

seq1  ACGTACATTCTTACTCCCCCTACACAGAAATATGTGCATACAACAAATCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACATTCTTACTCCCCCTACACAGAAATATGTGCATACAACAAATCA  746

seq1  GTTTATCTTTATTTAGTGAGTATCAAACATTCAAAACACTCTATTTTTCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTTTATTTAGTGAGTATCAAACATTCAAAACACTCTATTTTTCC  796

seq1  TTTAAAAATATGCTTTTAATTTTATCTGCCCATTAAATGAGATATGTATC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATGCTTTTAATTTTATCTGCCCATTAAATGAGATATGTATC  846

seq1  AAGAACCATGTCCCTGTTTTATTTTTATTACTATTTATGTTTATGCAGTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCATGTCCCTGTTTTATTTTTATTACTATTTATGTTTATGCAGTT  896

seq1  TCTTCTCAGGAATTTCTGATTTCATTAGCTTAATTTTAAGAAAAAGCTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCAGGAATTTCTGATTTCATTAGCTTAATTTTAAGAAAAAGCTAT  946

seq1  TTTTTATGTTGATAGATATCATTACTCTTTCTAACACATTGATCTCTACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTGATAGATATCATTACTCTTTCTAACACATTGATCTCTACT  996

seq1  TATTTTTTATATAATTAACTCTTTTGTTGAATTTTTATTCAATGATTGAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATATAATTAACTCTTTTGTTGAATTTTTATTCAATGATTGAT  1046

seq1  TTTTTTTTAATTCATGACTTGGGCTTTAAACTCATAAATTTTCAAACTTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATTCATGACTTGGGCTTTAAACTCATAAATTTTCAAACTTT  1096

seq1  TTTTCTCTCCCACTCTAAAATAGGAAATTTAATTATTAAATCAGTTGAGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCCCACTCTAAAATAGGAAATTTAATTATTAAATCAGTTGAGA  1146

seq1  AGCATTTTTATAAACACTGGCATTATTTTACTTTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTATAAACACTGGCATTATTTTACTTTGAATTC  1186


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