BAC Information

Click to search

BAC

Clone NameB6Ng01-189I15
Chromosome18 (Build37)
Map Location 43,050,120 - 43,196,805
singlet/doubletdoublet
Overlap genePpp2r2b
Upstream genePrelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189I15.bB6Ng01-189I15.g
ACCGA013537GA013538
length1,0991,097
definitionB6Ng01-189I15.b B6Ng01-189I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,195,711 - 43,196,805)(43,050,120 - 43,051,215)
sequence
gaattcccaagctagaccacctagaatcctttacacctaccatagagcta
tacacgggcaaagttacttagtctgtacaattgagatagaatcaaataag
ctaatcgagaatactgactatgaagttactgaacgcattaggtggtcaag
tgatttttaaagatctttttcgagatgctaaccctcttctatatccattc
ttgtgcaaagtaagctatcactggtatgattttaaagaacactcttaaca
ctgctatggctctgtttagtcagttttaaaggaagagtttaacagccaaa
tgcataaaactacactttacagcctagtgtagaaagctgaaaaaaaattg
aggaactctattgggtactagtaaccattattaaaattccatataatgtg
attcagcatctttgtgttgtgtactacatgatcaaatgagaaattaaagt
gtatgcaattatctagacacctagactctttcttcctctttagtttcatt
tcagacattaaagattttgtgcaactcatgtcttttagtctatgtggtct
tttatttccctaatttccccctcctgtttgaaactgtaaatgccttagaa
atatatcatttcaactttaggtataattttatttcctaaatactataaca
tattgctcaagctataacccagggatgattggccagcaaagttggccttc
ctaattttccaggttgcaaagctttgggagtctcctaacttctttttgaa
cagaagatggggaaatgaactgattatgctccttgcctcacccttcattc
taggaatgatgttgaataaagttttttcagggtttgctaccaatatttca
ccaggccatttttgtaagaagttgggtacttactgctcccccactcccct
ctctgacaccataagacatcactagaaggttgattcaaaacactcacaga
caagccaatgtcttccttatcataggtggctgatgtctgatgtttccttg
agatagtcaatgacatgtcaggttagcactgtggacttcaggatgaaaat
agaaaacattctaacagcgcagtacattgtaatattggataaagacaac
gaattctggagctgtttagaacttatgcccctgtcctctctcccactccc
tgagcacagtgtttgaacataaccagatgatcatgaacgcagacagagat
tcaatgcagacctttacagccaataaaactacagattgtccattccctcc
cccatctctaacagattagggaatggaagctcagagactaaaagtgacta
attactgaggctggcttgggaatcctacccagggcttctgatgtacatcc
cataccagtaaattgccttttaacttttttttttcattcactttcaaatt
cttgataaaaacaggaccttttgttctgtgttgaataagagtattttgaa
aaactgtgtcagcaacatgccttcagttgtcagaagtcatggttcatcca
ctgagaagaggtggtctttggtagtgtttttcaggcatttggaatcagac
agacttggatgtgatttgtgttgcatctattgtagtataaccaatatctg
cttaggataaggtgaatatcaacctatgaaactgaggatgatgggaagag
tctctagaggcccaactgtccacagcatacagaacgcctctaactgctaa
caaacatttttgtttatggacatgccaggttcatggatattttagacaca
gtactgcatacatggtagcgatgtgcctggtgatctccttttcctggtcc
ttgtggttaattatttaatcaaaggttgcacagaggataaatgggggggt
aggggcaggccaacgatgtcttcttatcatcctactaacaaataggaacc
agcatctatctcgtctttaaagacaataaaaccagaaaagacaatgtctt
ctcaaaacccatatatatttacaggtgatcccgtggcagcatctgtctat
aaaaaacagaggtggcctttcatccactcacaaggaacttctaggtaact
gtgggtcagttcttacatctcatgcatagcaattaggaagcctaaggcca
gtagtgtctgatcatggaaaagagcttttgcgtactactaaacttgctag
atctaaaaacaacctataattacacaggccaaggtatactccatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_43195711_43196805
seq2: B6Ng01-189I15.b_48_1146 (reverse)

seq1  GTTGTCTTTATTCTATA-TACAATGTACTTGCGCTG-TAGAATG-TTTCT  47
      ||||||||||| | ||| |||||||||| ||||||| ||||||| |||||
seq2  GTTGTCTTTATCCAATATTACAATGTAC-TGCGCTGTTAGAATGTTTTCT  49

seq1  A-TTTCATTCTGAAGTCCACAGTGCTAA-CTGACATGTCATTTGACTATC  95
      | |||||| ||||||||||||||||||| ||||||||||| |||||||||
seq2  ATTTTCATCCTGAAGTCCACAGTGCTAACCTGACATGTCA-TTGACTATC  98

seq1  TCAAGGAAACATCAGACATCAGCCACCTATGATAAGGAAGACATTGGCTT  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAACATCAGACATCAGCCACCTATGATAAGGAAGACATTGGCTT  148

seq1  GTCTGTGAGTGTTTTTGAATCAACCTTCTAGTGATGTCTTATGGTGTCAG  195
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAGTG-TTTTGAATCAACCTTCTAGTGATGTCTTATGGTGTCAG  197

seq1  AGAGGGGAGTGGGGGAGCAGTAAGTA-CCAACTTCTTACAAAAATGGCCT  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGGGGAGTGGGGGAGCAGTAAGTACCCAACTTCTTACAAAAATGGCCT  247

seq1  GGTGAAATATTGGTAGCAAACCCTGAAAAAACTTTATTCAACATCATTCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATATTGGTAGCAAACCCTGAAAAAACTTTATTCAACATCATTCC  297

seq1  TAGAATGAAGGGTGAGGCAAGGAGCATAATCAGTTCATTTCCCCATCTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAAGGGTGAGGCAAGGAGCATAATCAGTTCATTTCCCCATCTTC  347

seq1  TGTTCAAAAAGAAGTTAGGAGACTCCCAAAGCTTTGCAACCTGGAAAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAAAGAAGTTAGGAGACTCCCAAAGCTTTGCAACCTGGAAAATT  397

seq1  AGGAAGGCCAACTTTGCTGGCCAATCATCCCTGGGTTATAGCTTGAGCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCCAACTTTGCTGGCCAATCATCCCTGGGTTATAGCTTGAGCAA  447

seq1  TATGTTATAGTATTTAGGAAATAAAATTATACCTAAAGTTGAAATGATAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATAGTATTTAGGAAATAAAATTATACCTAAAGTTGAAATGATAT  497

seq1  ATTTCTAAGGCATTTACAGTTTCAAACAGGAGGGGGAAATTAGGGAAATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAGGCATTTACAGTTTCAAACAGGAGGGGGAAATTAGGGAAATA  547

seq1  AAAGACCACATAGACTAAAAGACATGAGTTGCACAAAATCTTTAATGTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCACATAGACTAAAAGACATGAGTTGCACAAAATCTTTAATGTCT  597

seq1  GAAATGAAACTAAAGAGGAAGAAAGAGTCTAGGTGTCTAGATAATTGCAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAACTAAAGAGGAAGAAAGAGTCTAGGTGTCTAGATAATTGCAT  647

seq1  ACACTTTAATTTCTCATTTGATCATGTAGTACACAACACAAAGATGCTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAATTTCTCATTTGATCATGTAGTACACAACACAAAGATGCTGA  697

seq1  ATCACATTATATGGAATTTTAATAATGGTTACTAGTACCCAATAGAGTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTATATGGAATTTTAATAATGGTTACTAGTACCCAATAGAGTTC  747

seq1  CTCAATTTTTTTTCAGCTTTCTACACTAGGCTGTAAAGTGTAGTTTTATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTTTTTTCAGCTTTCTACACTAGGCTGTAAAGTGTAGTTTTATG  797

seq1  CATTTGGCTGTTAAACTCTTCCTTTAAAACTGACTAAACAGAGCCATAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCTGTTAAACTCTTCCTTTAAAACTGACTAAACAGAGCCATAGC  847

seq1  AGTGTTAAGAGTGTTCTTTAAAATCATACCAGTGATAGCTTACTTTGCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAGAGTGTTCTTTAAAATCATACCAGTGATAGCTTACTTTGCAC  897

seq1  AAGAATGGATATAGAAGAGGGTTAGCATCTCGAAAAAGATCTTTAAAAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGATATAGAAGAGGGTTAGCATCTCGAAAAAGATCTTTAAAAAT  947

seq1  CACTTGACCACCTAATGCGTTCAGTAACTTCATAGTCAGTATTCTCGATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGACCACCTAATGCGTTCAGTAACTTCATAGTCAGTATTCTCGATT  997

seq1  AGCTTATTTGATTCTATCTCAATTGTACAGACTAAGTAACTTTGCCCGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATTTGATTCTATCTCAATTGTACAGACTAAGTAACTTTGCCCGTG  1047

seq1  TATAGC-CTATGGTAGGTGTAAAGGATTCTAGGTGGTCTAGCTTGGGAAT  1093
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCTATGGTAGGTGTAAAGGATTCTAGGTGGTCTAGCTTGGGAAT  1097

seq1  TC  1095
      ||
seq2  TC  1099

seq1: chr18_43050120_43051215
seq2: B6Ng01-189I15.g_64_1160

seq1  GAATTCTGGAGCTGTTTAGAACTTATGCCCCTGTCCTCTCTCCCACTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGCTGTTTAGAACTTATGCCCCTGTCCTCTCTCCCACTCCC  50

seq1  TGAGCACAGTGTTTGAACATAACCAGATGATCATGAACGCAGACAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTGTTTGAACATAACCAGATGATCATGAACGCAGACAGAGAT  100

seq1  TCAATGCAGACCTTTACAGCCAATAAAACTACAGATTGTCCATTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCAGACCTTTACAGCCAATAAAACTACAGATTGTCCATTCCCTCC  150

seq1  CCCATCTCTAACAGATTAGGGAATGGAAGCTCAGAGACTAAAAGTGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCTAACAGATTAGGGAATGGAAGCTCAGAGACTAAAAGTGACTA  200

seq1  ATTACTGAGGCTGGCTTGGGAATCCTACCCAGGGCTTCTGATGTACATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAGGCTGGCTTGGGAATCCTACCCAGGGCTTCTGATGTACATCC  250

seq1  CATACCAGTAAATTGCCTTTTAACTTTTTTTTTTCATTCACTTTCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAGTAAATTGCCTTTTAACTTTTTTTTTTCATTCACTTTCAAATT  300

seq1  CTTGATAAAAACAGGACCTTTTGTTCTGTGTTGAATAAGAGTATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAAAACAGGACCTTTTGTTCTGTGTTGAATAAGAGTATTTTGAA  350

seq1  AAACTGTGTCAGCAACATGCCTTCAGTTGTCAGAAGTCATGGTTCATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTCAGCAACATGCCTTCAGTTGTCAGAAGTCATGGTTCATCCA  400

seq1  CTGAGAAGAGGTGGTCTTTGGTAGTGTTTTTCAGGCATTTGGAATCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGAGGTGGTCTTTGGTAGTGTTTTTCAGGCATTTGGAATCAGAC  450

seq1  AGACTTGGATGTGATTTGTGTTGCATCTATTGTAGTATAACCAATATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGATGTGATTTGTGTTGCATCTATTGTAGTATAACCAATATCTG  500

seq1  CTTAGGATAAGGTGAATATCAACCTATGAAACTGAGGATGATGGGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATAAGGTGAATATCAACCTATGAAACTGAGGATGATGGGAAGAG  550

seq1  TCTCTAGAGGCCCAACTGTCCACAGCATACAGAACGCCTCTAACTGCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGAGGCCCAACTGTCCACAGCATACAGAACGCCTCTAACTGCTAA  600

seq1  CAAACATTTTTGTTTATGGACATGCCAGGTTCATGGATATTTTAGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTTTTGTTTATGGACATGCCAGGTTCATGGATATTTTAGACACA  650

seq1  GTACTGCATACATGGTAGCGATGTGCCTGGTGATCTCCTTTTCCTGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCATACATGGTAGCGATGTGCCTGGTGATCTCCTTTTCCTGGTCC  700

seq1  TTGTGGTTAATTATTTAATCAAAGGTTGCACAGAGGATAAAT-GGGGGGT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGTGGTTAATTATTTAATCAAAGGTTGCACAGAGGATAAATGGGGGGGT  750

seq1  AGGGGCAGGCCAACGATGTCTTCTTATCATCCTACTAACAAATAGGAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGCCAACGATGTCTTCTTATCATCCTACTAACAAATAGGAACC  800

seq1  AGCATCTATCTCGTCTTTAAAGACAATAAAACCAGAAAAGACAATGTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTATCTCGTCTTTAAAGACAATAAAACCAGAAAAGACAATGTCTT  850

seq1  CTCAAAACCCATATATATTTACAGGTGATCCCGTGGCAGCATCTGTCATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCAAAACCCATATATATTTACAGGTGATCCCGTGGCAGCATCTGTC-TA  899

seq1  T-AAAAACAGAGGTGGCCTTTCATCCACTCACAAAGGAACTTCTAGGTAA  948
      | |||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TAAAAAACAGAGGTGGCCTTTCATCCACTCAC-AAGGAACTTCTAGGT-A  947

seq1  ACTGTGGGTTCAGTCCTAACATCTCCATGCATAGCCAATTAGGAAGCCTA  998
      |||||||| ||||| || |||||| ||||||||| |||||||||||||||
seq2  ACTGTGGG-TCAGTTCTTACATCT-CATGCATAG-CAATTAGGAAGCCTA  994

seq1  GGCCAAGAAGTGTTCTGA-CATGGAAAAGAGC-TTTGCG-ACTATAAAAA  1045
       | | || |||| ||||| ||||||||||||| |||||| ||||  ||| 
seq2  AGGCCAGTAGTG-TCTGATCATGGAAAAGAGCTTTTGCGTACTACTAAAC  1043

seq1  CTGCCAGA--CAAAAACAACCTATAAATACAACAGG-CAAGGTATACT-C  1091
       ||| |||   ||||||||||||||| ||| ||||| ||||||||||| |
seq2  TTGCTAGATCTAAAAACAACCTATAATTAC-ACAGGCCAAGGTATACTCC  1092

seq1  ATTTT  1096
      |||||
seq2  ATTTT  1097