BAC Information

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BAC

Clone NameB6Ng01-190G05
Chromosome18 (Build37)
Map Location 16,217,981 - 16,273,540
singlet/doubletdoublet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G05.bB6Ng01-190G05.g
ACCGA014154GA014155
length1,0301,184
definitionB6Ng01-190G05.b B6Ng01-190G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,272,500 - 16,273,540)(16,217,981 - 16,219,179)
sequence
gaattcttgattcccttgcccagttggttcagttatttggacaatttttg
agggtatcctggagttctatgagtttaggattccctagaaagagggtgcg
attttggtactgattggttcttcagtattagacatctaatattgcattgt
tgtgatatttttctccaaagaaagtgactcttgtttgtgtgcttgcaagt
gtgtttgtgcacatatacatatattccagaaatgactctgcatgccagtc
ttactcactagacttcatttccagagggcagaaaacaatcacatgcattg
ctcttaccacatagcacatatgatgtgtgtatagtgtatatattagctga
taaataaaacaccagggaaacagtgtttgctgtaaggttcctttcaggag
tttatataacctcccgcagaactgaaaatggtttccattctgtgcagttt
taaaataaataatagagaccttaagtctccaacaagagatccatataatt
ttagctgaaagtgatttataaaaagtgttagccattgattctacttgcta
tgatggattgtaagaaagccctctaccacttactgaagctgggtggggta
ccatttgatataaggtatgtttacttcactagtagtggcatatttggtgc
agcaagatgatgtgacagacaggatagaaattctctttgcaacaggatgt
cagagacattagagcggagtgaataccaaatgctggctttggtgggatat
cactttaggcactgtatgtatctctaaccatgtccattcttcgtgttgtg
tttaacattcacacaggcataaaactaagccattcactgaggagacaaag
atgctgtgactccattcttgttcttatggacctcacatatatgggcacca
cacaaatactttggacgattgatatctcttcttaaactagtgggataaat
aactggtgatgatgctactgcattatagaaaataacttctagccagcatc
acataactggatgcttgtattcaaagtaaa

gaattctgtgaatctacatgaagactgctgtggtagttaggctatataga
aatgagagatggaggaagaagaattctggaaagctaataatgaggctggc
ctctgcttttcatttgagtacaactgcattctcatacacacacacaaaca
gatatacatgtataatacattctcatttccaccagacacacacacaacac
acatatatgcacaaaattatttatacaactatttggttttctaatttttt
tagtttgctaatgtatttagaacaatttaattagccattgtacattgctt
tcaaagctagagtatgaatgtttaataattttatcttcataaaataatat
tagttttatactattttctatacagagcaaatattttgtgcttctctatc
agtaacaaaaataaaagtaaaataaataatatctagaaagcagagatgaa
tttcatctctattataaataattttaacaggcatattttgaggaaagata
aatgaaatatccagctcaaaattactcttcttcaaaatacttcagtgtgt
tttgtaggaataaacttatttgctgacacattttcaagcttttaaaaatt
ttaatcattttttggggaaatacatcattattaaaacacccaaggacagc
aaacatatcattatatgcagatggtgatccaggaaggcagaaaatgattc
ttctccattaaatgagaaaaattatgccaggttttcacgaggccatgctc
ccaaacaagatgactgtgcagcagactaggctcatttgcttattttgcag
atatggtagcagtcatcttgctaaaactgaaagagcatctccaggatgca
tgtaggaaagctagctgcccaggaactagggaagtacttgatacacagca
gtgacccatgattgattttcttaaggtagcatagaagcaagagggcatgt
cctactgagtgtgtacattactcactattgttctgaagattcttattttc
ttatacatgaaaatcctagggacttaaactatgcaacatagcactttctc
tctgcatcagaatacagggttagcttgttcttgtagcatgatgctctata
tgtcctaagtcagttgactcaatttggctgatgatggcaattggatcaat
aactggaggtgctgaacgtaatagacaaggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16272500_16273540
seq2: B6Ng01-190G05.b_45_1074 (reverse)

seq1  TTTACTT--GATACAAGGCAT-CAGTTATGTGATGCCTGCTAGGAAGGTG  47
      |||||||   |||||| |||| ||||||||||||||  |||| ||||   
seq2  TTTACTTTGAATACAA-GCATCCAGTTATGTGATGCTGGCTA-GAAG--T  46

seq1  TATTTTCTAATAATACCAGTAGCATCAATTCCACCAAGTTAATTTATCTC  97
      |||||||| |||||  |||||||||||    |||| |||| ||||||| |
seq2  TATTTTCT-ATAAT-GCAGTAGCATCA---TCACC-AGTT-ATTTATCCC  89

seq1  ACCTAAGTTTAAG-AGAGATTATTCAATCGTTCAAAGTATTTGTGTGGTG  146
      ||   |||||||| ||||||   |||||||| ||||||||||||||||||
seq2  AC--TAGTTTAAGAAGAGAT--ATCAATCGTCCAAAGTATTTGTGTGGTG  135

seq1  CCCATATATGTGAGGTCCATAAG-ACAAGAATGGAGTCACAGCATCTTTG  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCCATATATGTGAGGTCCATAAGAACAAGAATGGAGTCACAGCATCTTTG  185

seq1  TCTCCTCAGTGAATGGCTTAGTTTTATGCCTGTTGTGAATGTTAAACACA  245
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCCTCAGTGAATGGCTTAGTTTTATGCCTG-TGTGAATGTTAAACACA  234

seq1  ACACGAAGAATGGACATGGTTAGAGATACATACAGTGCCTAAAGTGATAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAAGAATGGACATGGTTAGAGATACATACAGTGCCTAAAGTGATAT  284

seq1  CCCACCAAAGCCAGCATTTGGTATTCACTCCGCTCTAATGTCTCTGACAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAAAGCCAGCATTTGGTATTCACTCCGCTCTAATGTCTCTGACAT  334

seq1  CCTGTTGCAAAGAGAATTTCTATCCTGTCTGTCACATCATCTTGCTGCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCAAAGAGAATTTCTATCCTGTCTGTCACATCATCTTGCTGCAC  384

seq1  CAAATATGCCACTACTAGTGAAGTAAACATACCTTATATCAAATGGTACC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGCCACTACTAGTGAAGTAAACATACCTTATATCAAATGGTACC  434

seq1  CCACCCAGCTTCAGTAAGTGGTAGAGGGCTTTCTTACAATCCATCATAGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGCTTCAGTAAGTGGTAGAGGGCTTTCTTACAATCCATCATAGC  484

seq1  AAGTAGAATCAATGGCTAACACTTTTTATAAATCACTTTCAGCTAAAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAATCAATGGCTAACACTTTTTATAAATCACTTTCAGCTAAAATT  534

seq1  ATATGGATCTCTTGTTGGAGACTTAAGGTCTCTATTATTTATTTTAAAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATCTCTTGTTGGAGACTTAAGGTCTCTATTATTTATTTTAAAAC  584

seq1  TGCACAGAATGGAAACCATTTTCAGTTCTGCGGGAGGTTATATAAACTCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGAATGGAAACCATTTTCAGTTCTGCGGGAGGTTATATAAACTCC  634

seq1  TGAAAGGAACCTTACAGCAAACACTGTTTCCCTGGTGTTTTATTTATCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAACCTTACAGCAAACACTGTTTCCCTGGTGTTTTATTTATCAG  684

seq1  CTAATATATACACTATACACACATCATATGTGCTATGTGGTAAGAGCAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATATACACTATACACACATCATATGTGCTATGTGGTAAGAGCAAT  734

seq1  GCATGTGATTGTTTTCTGCCCTCTGGAAATGAAGTCTAGTGAGTAAGACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGATTGTTTTCTGCCCTCTGGAAATGAAGTCTAGTGAGTAAGACT  784

seq1  GGCATGCAGAGTCATTTCTGGAATATATGTATATGTGCACAAACACACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCAGAGTCATTTCTGGAATATATGTATATGTGCACAAACACACTT  834

seq1  GCAAGCACACAAACAAGAGTCACTTTCTTTGGAGAAAAATATCACAACAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACACAAACAAGAGTCACTTTCTTTGGAGAAAAATATCACAACAA  884

seq1  TGCAATATTAGATGTCTAATACTGAAGAACCAATCAGTACCAAAATCGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATTAGATGTCTAATACTGAAGAACCAATCAGTACCAAAATCGCA  934

seq1  CCCTCTTTCTAGGGAATCCTAAACTCATAGAACTCCAGGATACCCTCAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTCTAGGGAATCCTAAACTCATAGAACTCCAGGATACCCTCAAA  984

seq1  AATTGTCCAAATAACTGAACCAACTGGGCAAGGGAATCAAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCCAAATAACTGAACCAACTGGGCAAGGGAATCAAGAATTC  1030


seq1: chr18_16217981_16219179
seq2: B6Ng01-190G05.g_65_1248

seq1  GAATTCTGTGAATCTACATGAAGACTGCTGTGGTAGTTAGGCTATATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATCTACATGAAGACTGCTGTGGTAGTTAGGCTATATAGA  50

seq1  AATGAGAGATGGAGGAAGAAGAATTCTGGAAAGCTAATAATGAGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGATGGAGGAAGAAGAATTCTGGAAAGCTAATAATGAGGCTGGC  100

seq1  CTCTGCTTTTCATTTGAGTACAACTGCATTCTCATACACACACACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTTCATTTGAGTACAACTGCATTCTCATACACACACACAAACA  150

seq1  GATATACATGTATAATACATTCTCATTTCCACCAGACACACACACAACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATGTATAATACATTCTCATTTCCACCAGACACACACACAACAC  200

seq1  ACATATATGCACAAAATTATTTATACAACTATTTGGTTTTCTAATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGCACAAAATTATTTATACAACTATTTGGTTTTCTAATTTTTT  250

seq1  TAGTTTGCTAATGTATTTAGAACAATTTAATTAGCCATTGTACATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCTAATGTATTTAGAACAATTTAATTAGCCATTGTACATTGCTT  300

seq1  TCAAAGCTAGAGTATGAATGTTTAATAATTTTATCTTCATAAAATAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTAGAGTATGAATGTTTAATAATTTTATCTTCATAAAATAATAT  350

seq1  TAGTTTTATACTATTTTCTATACAGAGCAAATATTTTGTGCTTCTCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATACTATTTTCTATACAGAGCAAATATTTTGTGCTTCTCTATC  400

seq1  AGTAACAAAAATAAAAGTAAAATAAATAATATCTAGAAAGCAGAGATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAAAATAAAAGTAAAATAAATAATATCTAGAAAGCAGAGATGAA  450

seq1  TTTCATCTCTATTATAAATAATTTTAACAGGCATATTTTGAGGAAAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCTATTATAAATAATTTTAACAGGCATATTTTGAGGAAAGATA  500

seq1  AATGAAATATCCAGCTCAAAATTACTCTTCTTCAAAATACTTCAGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATATCCAGCTCAAAATTACTCTTCTTCAAAATACTTCAGTGTGT  550

seq1  TTTGTAGGAATAAACTTATTTGCTGACACATTTTCAAGCTTTTAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGGAATAAACTTATTTGCTGACACATTTTCAAGCTTTTAAAAATT  600

seq1  TTAATCATTTTTTGGGGAAATACATCATTATTAAAACACCCAAGGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATTTTTTGGGGAAATACATCATTATTAAAACACCCAAGGACAGC  650

seq1  AAACATATCATTATATGCAGATGGTGATCCAGGAAGGCAGAAAATGATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATCATTATATGCAGATGGTGATCCAGGAAGGCAGAAAATGATTC  700

seq1  TTCTCCATTAAATGAGAAAAATTATGCCAGGTTTTCACGAGGCCATGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATTAAATGAGAAAAATTATGCCAGGTTTTCACGAGGCCATGCTC  750

seq1  CCAAACAAGATGACTGTGCAGCAGACTAGGCTCATTTGCTTATTTTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGATGACTGTGCAGCAGACTAGGCTCATTTGCTTATTTTGCAG  800

seq1  ATATGGTAGCAGTCATCTTGCTAAAACTGAAAGAGCATCTCCAGGATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAGCAGTCATCTTGCTAAAACTGAAAGAGCATCTCCAGGATGCA  850

seq1  TGTAGGAAAGCTAGCTGCCCAGGAACTAGGGAAGTACTTGATACACAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAAAGCTAGCTGCCCAGGAACTAGGGAAGTACTTGATACACAGCA  900

seq1  GGTGACCCATGATTGATTTTCTTAAGGTAGCATAGAAAGCAAGAGGGCAT  950
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -GTGACCCATGATTGATTTTCTTAAGGTAGCATAG-AAGCAAGAGGGCAT  948

seq1  GTCCTACTGAGTGTGTACATTACTCACTATTG-TCTGAAGATTC-TATTT  998
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GTCCTACTGAGTGTGTACATTACTCACTATTGTTCTGAAGATTCTTATTT  998

seq1  --CTATACATGAAAATCCTAAGGGACTTAAACTATGGCAACATAGCACTT  1046
         |||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TCTTATACATGAAAATCCT-AGGGACTTAAACTAT-GCAACATAGCACTT  1046

seq1  TCTCCTTCTGCAATCAGAATACAGGG-TAGCTTG-TCTTGTAAAGCATGG  1094
      ||||  ||||| |||||||||||||| ||||||| ||||||  ||||| |
seq2  TCTC--TCTGC-ATCAGAATACAGGGTTAGCTTGTTCTTGT--AGCAT-G  1090

seq1  ATGCTCTTAATATTGTCCTAAAGTTCAAGTTTGACTC-ATTTGGCTGATG  1143
      |||||||  ||| ||||||||   |||   ||||||| ||||||||||||
seq2  ATGCTCT--ATA-TGTCCTAA--GTCA--GTTGACTCAATTTGGCTGATG  1133

seq1  AATGGCCATTGGGATACAATAAAACTGAAGGTGCTTGGAGTGATAAGCAA  1193
       ||||| ||| |||| ||||  ||||| |||||||    || |||  |||
seq2  -ATGGCAATT-GGAT-CAAT--AACTGGAGGTGCTGAACGTAATAGACAA  1178

seq1  GGTTTG  1199
      ||||||
seq2  GGTTTG  1184


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