BAC Information

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BAC

Clone NameB6Ng01-192C15
Chromosome18 (Build37)
Map Location 65,180,115 - 65,330,936
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192C15.bB6Ng01-192C15.g
ACCGA015470GA015471
length1,1821,122
definitionB6Ng01-192C15.b B6Ng01-192C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,180,115 - 65,181,301)(65,329,822 - 65,330,936)
sequence
gaattcatgctgtaaacctagccagctggcgggcacctacttcacctccc
aaaccagtatgaccttgagctacattcgtaatacttactcttaacaggtg
tggctctcacccctcgtcagagaaggctttttctgaagagatggagacca
ttgttgaaacgggcctactgatcaaagcccttttacaaatgagctatttc
ttggcattactttttctctttgtttttttgtttttgttttttcaaaacag
ggtttctctgtatagtcctggctgtcctggaactcactttgtagaccagg
ctggcctcgacctcagaaatccgcctgcctctgcctcccgagtgctgggt
ttaaaggcgtgcgccaccacgcccggcttactttttctgtatgctctgat
tggaatgcagagctactgaaattcacctcttgattgttctgggataaaat
taagcttattataaataagatttctgctgtatttgcacttacatgcaacc
agcacactgtggtgatgaggttacaaaacagatgttttcctcagtgtgaa
gtcctgacaatccccgccttcctcactgcactcagtagcatccttgtctg
ttacactccagaccccggatgcctccccccacctcaggtcccttgtatca
ctgctagtctcctggcagctgcttatgaaacctaacgtttattggactct
cccctgctgctttcttataaattacagcatcgagtaagagacttgacaca
gcggcatctcttaaacatgagttttctaaggtcatctttcctcacagtcc
tcacttctggtaattactccccccaccccccaagattggtgtcttagttc
aggttttactgctgtgagcagacaccatgaccgtgtcaactcttataagg
acacaacattcaataggggctggcttacaggttcggaggttcagtccatt
attcatcaagtaggagcacgcaatgtccaggcagaatggtgcagagaggc
tgagagtgctacaatctttatctgaaggctgctagtggaagactggcttc
agcagctagggtgaaggtcttaaagcccactcccacatgaaccacactgc
tccaaacaagcccacatctccaatatgccactccctggacaagccatata
cagaacctgtaacaattggtatggatgtgaat
gaattccatccttttaaatgaagaattactgagattttgccttgtgtaag
aagcagcgtgagtctgtgtgaacaggtgctagagtaaacaggatgtctgc
gtgactggcagaaaagggatgcccagggcgagcactagcctaggaatgcc
tgcatccatggaactgaatcacgaattgtactgggaagcaacgatctagg
ggaggcgttcagaaagacagtacctaccagggccagcaagacttctggga
ggttgaggaacagccctgttgctctgggggctgtttcccctgtggggtct
tctcccaccagttctcttaagtacctcagccggtgctgctttcttggaat
taggctgatcatgtgactcttctcttactgagccttctttctgtccttcc
ctagctaccctgcttactatgaactgctctggtgaaggtcacagccacag
agtcctcagtgccccgtgacccggaattagaggaagcaagaacatgcata
ttgcatttgccaaggactgtgactgaagaggcccctctatgggctttcca
cgctcaacagcacactccagaaaaatgaactggaaaactaactgggaagc
agctgactcggtggttatttctaagctatgtttatcaggcagggagagag
tatatatgaggaaccttcttgctaaaaaaatgctccttgacattttccca
gagacatcctaaaggatcagggaattccaagagcaacgaaccacatagca
tcctgaatccaggagcaagacaaacaccaacaaagagatgtaagctgtta
tgaccatgaaagacagaccaagtggtccacagcctaaatggaagacaccc
acaacaagccctacctcccttccagggttttaatctggactggctggaag
cctagtctgatgttctgtcatctaagcaaataagacaatacgtttttgac
ttactggtggcttaaatgagccacaatttgctttgactacattggaatat
taaatagccactttttactgttctcctttttttttttttgatgagtccat
gtttaaggacaggcatcctgataggtctcagaagacaccagttctagaaa
cattgagagactttaacaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65180115_65181301
seq2: B6Ng01-192C15.b_45_1226

seq1  GAATTCATGCTGTAAACCTAGCCAGCTGGCGGGCACCTACTTCACCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTGTAAACCTAGCCAGCTGGCGGGCACCTACTTCACCTCCC  50

seq1  AAACCAGTATGACCTTGAGCTACATTCGTAATACTTACTCTTAACAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTATGACCTTGAGCTACATTCGTAATACTTACTCTTAACAGGTG  100

seq1  TGGCTCTCACCCCTCGTCAGAGAAGGCTTTTTCTGAAGAGATGGAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCACCCCTCGTCAGAGAAGGCTTTTTCTGAAGAGATGGAGACCA  150

seq1  TTGTTGAAACGGGCCTACTGATCAAAGCCCTTTTACAAATGAGCTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAACGGGCCTACTGATCAAAGCCCTTTTACAAATGAGCTATTTC  200

seq1  TTGGCATTACTTTTTCTCTTTGTTTTTTTGTTTTTGTTTTTTCAAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTACTTTTTCTCTTTGTTTTTTTGTTTTTGTTTTTTCAAAACAG  250

seq1  GGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG  300

seq1  CTGGCCTCGACCTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGACCTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGT  350

seq1  TTAAAGGCGTGCGCCACCACGCCCGGCTTACTTTTTCTGTATGCTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACCACGCCCGGCTTACTTTTTCTGTATGCTCTGAT  400

seq1  TGGAATGCAGAGCTACTGAAATTCACCTCTTGATTGTTCTGGGATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCAGAGCTACTGAAATTCACCTCTTGATTGTTCTGGGATAAAAT  450

seq1  TAAGCTTATTATAAATAAGATTTCTGCTGTATTTGCACTTACATGCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTATTATAAATAAGATTTCTGCTGTATTTGCACTTACATGCAACC  500

seq1  AGCACACTGTGGTGATGAGGTTACAAAACAGATGTTTTCCTCAGTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTGTGGTGATGAGGTTACAAAACAGATGTTTTCCTCAGTGTGAA  550

seq1  GTCCTGACAATCCCCGCCTTCCTCACTGCACTCAGTAGCATCCTTGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACAATCCCCGCCTTCCTCACTGCACTCAGTAGCATCCTTGTCTG  600

seq1  TTACACTCCAGACCCCGGATGCCTCCCCCCACCTCAGGTCCCTTGTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTCCAGACCCCGGATGCCTCCCCCCACCTCAGGTCCCTTGTATCA  650

seq1  CTGCTAGTCTCCTGGCAGCTGCTTATGAAACCTAACGTTTATTGGACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGTCTCCTGGCAGCTGCTTATGAAACCTAACGTTTATTGGACTCT  700

seq1  CCCCTGCTGCTTTCTTATAAATTACAGCATCGAGTAAGAGACTTGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTGCTTTCTTATAAATTACAGCATCGAGTAAGAGACTTGACACA  750

seq1  GCGGCATCTCTTAAACATGAGTTTTCTAAGGTCATCTTTCCTCACAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCATCTCTTAAACATGAGTTTTCTAAGGTCATCTTTCCTCACAGTCC  800

seq1  TCACTTCTGGTAATTACTCCCCCCACCCCCCAAGATTGGTGTCTTAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGGTAATTACTCCCCCCACCCCCCAAGATTGGTGTCTTAGTTC  850

seq1  AGGTTTTACTGCTGTGAGCAGACACCATGACCGTGTCAACTCTTATAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTACTGCTGTGAGCAGACACCATGACCGTGTCAACTCTTATAAGG  900

seq1  ACACAACATTCAATAGGGGCTGGCTTACAGGTTCGGAGGTTCAGTCCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATTCAATAGGGGCTGGCTTACAGGTTCGGAGGTTCAGTCCATT  950

seq1  A-TCATCAAGGTAGGAGCACGGCAATGTCCAGGCAGGAATGGTGCAGGAG  999
      | ||||||| |||||||||| |||||||||||||| |||||||||| |||
seq2  ATTCATCAA-GTAGGAGCAC-GCAATGTCCAGGCA-GAATGGTGCA-GAG  996

seq1  AGGCTGAGAGTGCTAC-ATCTTTATCTGAAGGCTGCTAGTGGAAGACTGG  1048
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCTGAGAGTGCTACAATCTTTATCTGAAGGCTGCTAGTGGAAGACTGG  1046

seq1  CTTCCAGGCAGCTAGGGTGAGGGTCTTAAAGCCCACTCCCACAATGACAC  1098
      ||||   ||||||||||||| ||||||||||||||||||||| ||||  |
seq2  CTTC--AGCAGCTAGGGTGAAGGTCTTAAAGCCCACTCCCAC-ATGAACC  1093

seq1  AC-CTGCTCC-AACAAGGCCACATCTCCAAATAGTGCCACTCCCTGGGCC  1146
      || ||||||| |||||| |||||||||| |||| ||||||||||||| | 
seq2  ACACTGCTCCAAACAAGCCCACATCTCC-AATA-TGCCACTCCCTGGACA  1141

seq1  AAGCATATACAGA--CTGTAACAATTGGTATTGGATGTAGAAT  1187
      |  ||||||||||  ||||||||||||||| ||||||| ||||
seq2  AGCCATATACAGAACCTGTAACAATTGGTA-TGGATGT-GAAT  1182

seq1: chr18_65329822_65330936
seq2: B6Ng01-192C15.g_66_1187 (reverse)

seq1  TGTTTGTTAAAG--TCTCAATGTTTCTAGACCT-GTGTCTTCTGAGAACC  47
      ||||||||||||  |||||||||||||||| || |||||||||||| |||
seq2  TGTTTGTTAAAGTCTCTCAATGTTTCTAGAACTGGTGTCTTCTGAG-ACC  49

seq1  TATCAGATGGCCTGTCCCTAAAACAT-GACTCATCAAAAAAAAAAAAAAG  96
      ||||||   |||||| ||| |||||| |||||||| ||||||||||||||
seq2  TATCAGGATGCCTGT-CCTTAAACATGGACTCATC-AAAAAAAAAAAAAG  97

seq1  GAGAACAGTAAAAAGT-GCTATTTAATATTCC-ATGTAGTCAAAGC-AAT  143
      |||||||||||||||| ||||||||||||||| ||||||||||||| |||
seq2  GAGAACAGTAAAAAGTGGCTATTTAATATTCCAATGTAGTCAAAGCAAAT  147

seq1  TGT-GCTCATTTAAGCCA-CAGTAAGTC-AAAACGTATTGTC-TATTTGC  189
      ||| |||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  TGTGGCTCATTTAAGCCACCAGTAAGTCAAAAACGTATTGTCTTATTTGC  197

seq1  TTAGATGACAGAACATCAGACTAGGCTTCCAGCCAGTCCAGATTAAAACC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGACAGAACATCAGACTAGGCTTCCAGCCAGTCCAGATTAAAACC  247

seq1  CTGGAAGGGAGGTAGGGCTTTGTTGTGGGTGTCTTCCATTTAGGCTGTGG  289
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGGAAGGGAGGTAGGGC-TTGTTGTGGGTGTCTTCCATTTAGGCTGTGG  296

seq1  ACCACTTGGTCTGTCTTTCATGGTCATAACAGCTTACATCTCTTTGTTGG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGGTCTGTCTTTCATGGTCATAACAGCTTACATCTCTTTGTTGG  346

seq1  TGTTTGTCTTGCTCCTGGATTCAGGATGCTATGTGGTTCGTTGCTCTTGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTCTTGCTCCTGGATTCAGGATGCTATGTGGTTCGTTGCTCTTGG  396

seq1  AATTCCCTGATCCTTTAGGATGTCTCTGGGAAAATGTCAAGGAGCATTTT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTGATCCTTTAGGATGTCTCTGGGAAAATGTCAAGGAGCATTTT  446

seq1  TTTAGCAAGAAGGTTCCTCATATATACTCTCTCCCTGCCTGATAAACATA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAAGAAGGTTCCTCATATATACTCTCTCCCTGCCTGATAAACATA  496

seq1  GCTTAGAAATAACCACCGAGTCAGCTGCTTCCCAGTTAGTTTTCCAGTTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAATAACCACCGAGTCAGCTGCTTCCCAGTTAGTTTTCCAGTTC  546

seq1  ATTTTTCTGGAGTGTGCTGTTGAGCGTGGAAAGCCCATAGAGGGGCCTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGGAGTGTGCTGTTGAGCGTGGAAAGCCCATAGAGGGGCCTCT  596

seq1  TCAGTCACAGTCCTTGGCAAATGCAATATGCATGTTCTTGCTTCCTCTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACAGTCCTTGGCAAATGCAATATGCATGTTCTTGCTTCCTCTAA  646

seq1  TTCCGGGTCACGGGGCACTGAGGACTCTGTGGCTGTGACCTTCACCAGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGTCACGGGGCACTGAGGACTCTGTGGCTGTGACCTTCACCAGAG  696

seq1  CAGTTCATAGTAAGCAGGGTAGCTAGGGAAGGACAGAAAGAAGGCTCAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATAGTAAGCAGGGTAGCTAGGGAAGGACAGAAAGAAGGCTCAGT  746

seq1  AAGAGAAGAGTCACATGATCAGCCTAATTCCAAGAAAGCAGCACCGGCTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGTCACATGATCAGCCTAATTCCAAGAAAGCAGCACCGGCTG  796

seq1  AGGTACTTAAGAGAACTGGTGGGAGAAGACCCCACAGGGGAAACAGCCCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTAAGAGAACTGGTGGGAGAAGACCCCACAGGGGAAACAGCCCC  846

seq1  CAGAGCAACAGGGCTGTTCCTCAACCTCCCAGAAGTCTTGCTGGCCCTGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAACAGGGCTGTTCCTCAACCTCCCAGAAGTCTTGCTGGCCCTGG  896

seq1  TAGGTACTGTCTTTCTGAACGCCTCCCCTAGATCGTTGCTTCCCAGTACA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACTGTCTTTCTGAACGCCTCCCCTAGATCGTTGCTTCCCAGTACA  946

seq1  ATTCGTGATTCAGTTCCATGGATGCAGGCATTCCTAGGCTAGTGCTCGCC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGATTCAGTTCCATGGATGCAGGCATTCCTAGGCTAGTGCTCGCC  996

seq1  CTGGGCATCCCTTTTCTGCCAGTCACGCAGACATCCTGTTTACTCTAGCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATCCCTTTTCTGCCAGTCACGCAGACATCCTGTTTACTCTAGCA  1046

seq1  CCTGTTCACACAGACTCACGCTGCTTCTTACACAAGGCAAAATCTCAGTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCACACAGACTCACGCTGCTTCTTACACAAGGCAAAATCTCAGTA  1096

seq1  ATTCTTCATTTAAAAGGATGGAATTC  1115
      ||||||||||||||||||||||||||
seq2  ATTCTTCATTTAAAAGGATGGAATTC  1122