BAC Information

Click to search

BAC

Clone NameB6Ng01-192E06
Chromosome18 (Build37)
Map Location 52,687,401 - 52,868,818
singlet/doubletdoublet
Overlap geneLox, Zfp474, 1700034E13Rik, Gykl1
Upstream geneEG240289, Ftmt, Srfbp1
Downstream geneSncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192E06.bB6Ng01-192E06.g
ACCGA015548GA015549
length849281
definitionB6Ng01-192E06.b B6Ng01-192E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,687,401 - 52,688,248)(52,868,538 - 52,868,818)
sequence
gaattccaagaccagaatagctattttattttaggactgacggaaaacaa
aactcttgcttgtggtcttataccaaaacaacccagttaatcacggcctg
aaagaaatgtggaatgtactctttaccaatgggggtgggggaggacaccg
tgacgaatacacccctagaccattagaaaataataagtgcttcctttatt
cccacaccctccccaccgtgttgttggttgttgaacttctgttttatata
aagttattggaagaagttggcgttaatgcctaagaggtatcttgggaaag
aacctgagacctagtcaccagaataagggttttcttttccctccccgggt
atgcgactttcactgaagcagcacgcataaaaacattccaaattaactct
ctctccaagtcagcatgcccaggaggtcatgtcccacttcccagcccttg
tcccacttcctaccccttgtctgcgctgaatagcagtcaaaactaggatc
aaaacctaagaccgggctgtggaaatccatacctggccaggcagttttct
tccgcagcgcatctcaggttgtacatagacatcttctggacgtacgtgga
agcctggatgtagtaggggtcgggcaccaggtccgggagacctaaagata
agacaagctgatgacctctgactcctaaacctgtttgtcacctttcgccc
accaagtctgcagggtggggctgagtgtgtggaagaacagggaaagtcgg
ggttaggaaaggaaagggaaaaggaaactgctggtgccaggagcgcggtt
tccatcagattccagagctggcgggacaggctggggttgggggttgggg

ctttaactttttcggggacaaaagctatgaaagcctttatttctctttca
tttctgaatgaaatgaatcctgctttgcaggatagaacattttctaattg
ttaccatttttgtttgtttgtttgtttgtttcagcattttggatagaaag
agaagaatctctttccatattcaagatttctgctaagaaatctgcaagta
gagcttggcttgttattttcaattggtgcttttaaaattgttggtattag
acatttttgggggggttggtgggtatttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52687401_52688248
seq2: B6Ng01-192E06.b_43_891

seq1  GAATTCCAAGACCAGAATAGCTATTTTATTTTAGGACTGACGGAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCAGAATAGCTATTTTATTTTAGGACTGACGGAAAACAA  50

seq1  AACTCTTGCTTGTGGTCTTATACCAAAACAACCCAGTTAATCACGGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGCTTGTGGTCTTATACCAAAACAACCCAGTTAATCACGGCCTG  100

seq1  AAAGAAATGTGGAATGTACTCTTTACCAATGGGGGTGGGGGAGGACACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGTGGAATGTACTCTTTACCAATGGGGGTGGGGGAGGACACCG  150

seq1  TGACGAATACACCCCTAGACCATTAGAAAATAATAAGTGCTTCCTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAATACACCCCTAGACCATTAGAAAATAATAAGTGCTTCCTTTATT  200

seq1  CCCACACCCTCCCCACCGTGTTGTTGGTTGTTGAACTTCTGTTTTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCCTCCCCACCGTGTTGTTGGTTGTTGAACTTCTGTTTTATATA  250

seq1  AAGTTATTGGAAGAAGTTGGCGTTAATGCCTAAGAGGTATCTTGGGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTGGAAGAAGTTGGCGTTAATGCCTAAGAGGTATCTTGGGAAAG  300

seq1  AACCTGAGACCTAGTCACCAGAATAAGGGTTTTCTTTTCCCTCCCCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAGACCTAGTCACCAGAATAAGGGTTTTCTTTTCCCTCCCCGGGT  350

seq1  ATGCGACTTTCACTGAAGCAGCACGCATAAAAACATTCCAAATTAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGACTTTCACTGAAGCAGCACGCATAAAAACATTCCAAATTAACTCT  400

seq1  CTCTCCAAGTCAGCATGCCCAGGAGGTCATGTCCCACTTCCCAGCCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGTCAGCATGCCCAGGAGGTCATGTCCCACTTCCCAGCCCTTG  450

seq1  TCCCACTTCCTACCCCTTGTCTGCGCTGAATAGCAGTCAAAACTAGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTCCTACCCCTTGTCTGCGCTGAATAGCAGTCAAAACTAGGATC  500

seq1  AAAACCTAAGACCGGGCTGTGGAAATCCATACCTGGCCAGGCAGTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAAGACCGGGCTGTGGAAATCCATACCTGGCCAGGCAGTTTTCT  550

seq1  TCCGCAGCGCATCTCAGGTTGTACATAGACATCTTCTGGACGTACGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGCGCATCTCAGGTTGTACATAGACATCTTCTGGACGTACGTGGA  600

seq1  AGCCTGGATGTAGTAGGGGTCGGGCACCAGGTCCGGGAGACCTAAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGATGTAGTAGGGGTCGGGCACCAGGTCCGGGAGACCTAAAGATA  650

seq1  AGACAAGCTGATGACCTCTGACTCCTAAACCTGTTTGTCACCTTTCGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTGATGACCTCTGACTCCTAAACCTGTTTGTCACCTTTCGCCC  700

seq1  ACCAAGTCTGCAGGGTGGGGCTGAGTGTGTGGAAGAACAGGGAAAGTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCTGCAGGGTGGGGCTGAGTGTGTGGAAGAACAGGGAAAGTCGG  750

seq1  GGTTAGG-AAGGAAAGGGAAAAGGAAACTGCTGGTGCCAGGAGCGCGGTT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAAAGGAAAGGGAAAAGGAAACTGCTGGTGCCAGGAGCGCGGTT  800

seq1  TCCATCAGATTCCAGAGCTGGCGGGACAGGCTGGGGTTGGGGGTTGGGG  848
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGATTCCAGAGCTGGCGGGACAGGCTGGGGTTGGGGGTTGGGG  849


seq1: chr18_52868538_52868818
seq2: B6Ng01-192E06.g_69_349 (reverse)

seq1  CAAAAATACCCACCAACCCCCCCAAAAATGTCTAATACCAACAATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACCCACCAACCCCCCCAAAAATGTCTAATACCAACAATTTTAA  50

seq1  AAGCACCAATTGAAAATAACAAGCCAAGCTCTACTTGCAGATTTCTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAATTGAAAATAACAAGCCAAGCTCTACTTGCAGATTTCTTAGC  100

seq1  AGAAATCTTGAATATGGAAAGAGATTCTTCTCTTTCTATCCAAAATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTGAATATGGAAAGAGATTCTTCTCTTTCTATCCAAAATGCTG  150

seq1  AAACAAACAAACAAACAAACAAAAATGGTAACAATTAGAAAATGTTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAAAATGGTAACAATTAGAAAATGTTCTAT  200

seq1  CCTGCAAAGCAGGATTCATTTCATTCAGAAATGAAAGAGAAATAAAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAAGCAGGATTCATTTCATTCAGAAATGAAAGAGAAATAAAGGCT  250

seq1  TTCATAGCTTTTGTCCCCGAAAAAGTTAAAG  281
      |||||||||||||||||||||||||||||||
seq2  TTCATAGCTTTTGTCCCCGAAAAAGTTAAAG  281


| Home | SequenceCutter | Blast | Download |