BAC Information

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BAC

Clone NameB6Ng01-192J01
Chromosome18 (Build37)
Map Location 39,653,034 - 39,779,667
singlet/doubletdoublet
Overlap genenone
Upstream geneSpry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192J01.bB6Ng01-192J01.g
ACCGA015774GA015775
length412926
definitionB6Ng01-192J01.b B6Ng01-192J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,779,257 - 39,779,667)(39,653,034 - 39,653,948)
sequence
ggaattcatgtatatattttgggaagtctgcactctctagatttaagaca
tatttttctgtgttacagtgaattattggttccctcccatggtacctcaa
ggatgtatgtcattgtcaacatgtccaaatcacaaagttatgcctcatgg
tcccagtcatgccaggcatcctcccctgcctgtggcacacgggctttcct
tgggtgagtgtgtctctagatggtggatgactccttcaaatcaacttaga
cgctgtgatcttctcaggccaacagcttcctaaaggaagtcatcgccaca
taaaaaataaaaaatcttactcatcaaaattatttgttattcaaataaaa
ggatgagcatgcagtggcatttttttaaacccaaaatgtttttggggggg
tgggtgggtcca
gaattcttgaaagacttaagcactcatggaatttaagcactgaatttcaa
agaaattaaatagtttttttttaaaacagagaaatgtccattgtacacag
atgaagtttaagattttgataacacgattcttattatagttaataactat
taagcatctgtccaccagacactattcaatatttttatacattactctta
actcattaacatggtacttactcatcaataactctaggaagttagtatta
ttacaaggtaagagacagtataaatccctacctcagagagaatgtatttt
attatctcataagaggagataggaataaaactgatatattcagactctat
ctagcaaaaacctgatctatccttttcattatgttaagtccctggaacag
aagcccatatataccagccttaaggtaatattttacagagttatgataat
aatgctgagtcaattaatcatctgggcataatattacttgaggttgaatt
ggctaaatgacttaacacaaagtttatgaatgctactcaagattttttat
gcttatccgtgtggatttttaatttccaaactttacccgtaaacaactag
aacacattataattttacaatatcctgcacaatttggtaacatgttagaa
tggtagtccatttgttgtgtgaacttttgttatattctttctccctacta
gaatataagactgaaagacagagacttcctattcaacacttcttattgca
gtgttataattgatgctcagtgggtgttaattgagtgatttgatgaatta
tgtattgacctataatgtcctaagacaaacaaaatatttaataagcctga
gcttgcaacccaaatcacaatttaccttttctgtagcatttggaactgca
aagaattgctcagaaagtaaaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39779257_39779667
seq2: B6Ng01-192J01.b_47_457 (reverse)

seq1  TGGACCCACCCACCCCCCCAAAAACATTTTGGGTTTAAAAAAATGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCACCCACCCCCCCAAAAACATTTTGGGTTTAAAAAAATGCCACT  50

seq1  GCATGCTCATCCTTTTATTTGAATAACAAATAATTTTGATGAGTAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCATCCTTTTATTTGAATAACAAATAATTTTGATGAGTAAGATT  100

seq1  TTTTATTTTTTATGTGGCGATGACTTCCTTTAGGAAGCTGTTGGCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTATGTGGCGATGACTTCCTTTAGGAAGCTGTTGGCCTGAG  150

seq1  AAGATCACAGCGTCTAAGTTGATTTGAAGGAGTCATCCACCATCTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCACAGCGTCTAAGTTGATTTGAAGGAGTCATCCACCATCTAGAGA  200

seq1  CACACTCACCCAAGGAAAGCCCGTGTGCCACAGGCAGGGGAGGATGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACCCAAGGAAAGCCCGTGTGCCACAGGCAGGGGAGGATGCCTG  250

seq1  GCATGACTGGGACCATGAGGCATAACTTTGTGATTTGGACATGTTGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTGGGACCATGAGGCATAACTTTGTGATTTGGACATGTTGACAA  300

seq1  TGACATACATCCTTGAGGTACCATGGGAGGGAACCAATAATTCACTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATACATCCTTGAGGTACCATGGGAGGGAACCAATAATTCACTGTAA  350

seq1  CACAGAAAAATATGTCTTAAATCTAGAGAGTGCAGACTTCCCAAAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAATATGTCTTAAATCTAGAGAGTGCAGACTTCCCAAAATATA  400

seq1  TACATGAATTC  411
      |||||||||||
seq2  TACATGAATTC  411

seq1: chr18_39653034_39653948
seq2: B6Ng01-192J01.g_71_996

seq1  GAATTCTTGAAAGACTTAAGCACTCATGGAATTTAAGCACTGAATTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAAGACTTAAGCACTCATGGAATTTAAGCACTGAATTTCAA  50

seq1  AGAAATTAAATAGTTTTTTTTTAAAACAGAGAAATGTCCATTGTACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAATAGTTTTTTTTTAAAACAGAGAAATGTCCATTGTACACAG  100

seq1  ATGAAGTTTAAGATTTTGATAACACGATTCTTATTATAGTTAATAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTTAAGATTTTGATAACACGATTCTTATTATAGTTAATAACTAT  150

seq1  TAAGCATCTGTCCACCAGACACTATTCAATATTTTTATACATTACTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCTGTCCACCAGACACTATTCAATATTTTTATACATTACTCTTA  200

seq1  ACTCATTAACATGGTACTTACTCATCAATAACTCTAGGAAGTTAGTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTAACATGGTACTTACTCATCAATAACTCTAGGAAGTTAGTATTA  250

seq1  TTACAAGGTAAGAGACAGTATAAATCCCTACCTCAGAGAGAATGTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGTAAGAGACAGTATAAATCCCTACCTCAGAGAGAATGTATTTT  300

seq1  ATTATCTCATAAGAGGAGATAGGAATAAAACTGATATATTCAGACTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCATAAGAGGAGATAGGAATAAAACTGATATATTCAGACTCTAT  350

seq1  CTAGCAAAAACCTGATCTATCCTTTTCATTATGTTAAGTCCCTGGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAAAACCTGATCTATCCTTTTCATTATGTTAAGTCCCTGGAACAG  400

seq1  AAGCCCATATATACCAGCCTTAAGGTAATATTTTACAGAGTTATGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATATATACCAGCCTTAAGGTAATATTTTACAGAGTTATGATAAT  450

seq1  AATGCTGAGTCAATTAATCATCTGGGCATAATATTACTTGAGGTTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGTCAATTAATCATCTGGGCATAATATTACTTGAGGTTGAATT  500

seq1  GGCTAAATGACTTAACACAAAGTTTATGAATGCTACTCAAGATTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATGACTTAACACAAAGTTTATGAATGCTACTCAAGATTTTTTAT  550

seq1  GCTTATCCGTGTGGA-TTTTAATTTCCAAACTTTACCCGTAAACAACTAG  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTTATCCGTGTGGATTTTTAATTTCCAAACTTTACCCGTAAACAACTAG  600

seq1  AACACATTATAATTTTACAATATCCTGCACAATTTGGTAACATGTTAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTATAATTTTACAATATCCTGCACAATTTGGTAACATGTTAGAA  650

seq1  TGGTAGTCCATTTGTTGTGTGAACTTTTGTTATATTCTTTCTCCCTACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTCCATTTGTTGTGTGAACTTTTGTTATATTCTTTCTCCCTACTA  700

seq1  GAATATAAGACTGAAAGACAGAGACTTCCTATTCAACACTTCTTA-TGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATATAAGACTGAAAGACAGAGACTTCCTATTCAACACTTCTTATTGCA  750

seq1  GTG-TATAATTGATGCTCAGTGGGTGTTAATTGAGTGAATTGATGAA-TA  796
      ||| |||||||||||||||||||||||||||||||||| |||||||| ||
seq2  GTGTTATAATTGATGCTCAGTGGGTGTTAATTGAGTGATTTGATGAATTA  800

seq1  TGTATTGA-CTATTATGTCCTAAGACAAACAAAATA-TTAATAAGCCTGA  844
      |||||||| |||| |||||||||||||||||||||| |||||||||||||
seq2  TGTATTGACCTATAATGTCCTAAGACAAACAAAATATTTAATAAGCCTGA  850

seq1  GC-TGCAA-CCAAATCACAATTTA-CATTTCTGTAGCATTTGG-ACTGCA  890
      || ||||| ||||||||||||||| | |||||||||||||||| ||||||
seq2  GCTTGCAACCCAAATCACAATTTACCTTTTCTGTAGCATTTGGAACTGCA  900

seq1  AAG-ATTGCTCAGAAAGTAAAATGCT  915
      ||| ||||||||||||||||||||||
seq2  AAGAATTGCTCAGAAAGTAAAATGCT  926