BAC Information

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BAC

Clone NameB6Ng01-193D22
Chromosome18 (Build37)
Map Location 56,918,671 - 57,034,527
singlet/doubletdoublet
Overlap geneMarch3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1
Downstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193D22.bB6Ng01-193D22.g
ACCGA016271GA016272
length1,2031,067
definitionB6Ng01-193D22.b B6Ng01-193D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,033,343 - 57,034,527)(56,918,671 - 56,919,730)
sequence
gaattccaaacccacaggtagtctaaaatagattttagcccattgtccaa
ctctttttctcaacaaacacgctaccaagcagcaaaagaggaaacattag
tttcacccctcccccagtcccttaatctgccagagaaggcaaagggtggc
tagatagtccccagataaaactcggtttgcacactggaaccccataggcc
cacctagccattgatgatttattttatttggccataatgagtttttcaat
acatttatataagctatgatcatctataactcagcttcctacatactgtc
tgtgtttctggcttctctcagaattcagaagaccagcctctgtgcccatg
aggccagtaggtggtgcctcctacagtgtgaatgcaagctttgcctcctg
gccagtgtagttcccaccaagatcgatttcgtgtgccgattccattgtct
actgggctctagagcatttacgtttgtggccctcgataagacatggagcc
cagaagaaagattttgctatccgccatggtgacaggtgtctgtcaatcac
atatcagttggatctgctgaagagcaaggttctcatccatgcataagagt
tctgcaacagaggcaggtgaaatgagtttgtcctacaggattgcatttcc
ttttctgataaggaattgaagatgtaagaaatgaaggaatgaaacatgta
agaaaagcacaaatggaagaaacatatcctagcctctgatgcagcccttt
ctctcatgtggtatccagtttcttaaaagattttgttttgttttgctttt
gttttctcaataatgggaaatgaactcagagcatggtcaggttagatggt
tgctcattcactgagctacaggtccggtccctgtttcttcccctgaatga
tggacatagaccatcatacatggtagatcccaggacttttaaacccaaac
cattgctttttgcataggactcttttgacttttccccttcaccaccaccc
ctcagaagccccagtctcttccctggtcttcatcctttcagatttctata
tgcaccattcctctagccctggtctcaccttgaatgaatgtggtggccta
tcatcaacacagtcaacctcatctggcatgcaattcatcaggcaagattt
ataagaaagtagtgggcataaaatgttttttaaggtttgagttgggtcta
tac
gaattcaattagattgtgtgaaaagatcatggcaagatagcaggttgtaa
gtgcataggaatttgaaagtgagcttaaaatgaattaaccaagagaactg
aggtcagggtaaggagatttggtatagaatggtggggtttctcttgagtt
gtacgtgcacatggtgtgtctcagaatcaatacttttccttgaattaatc
aacgggtcagcaaggaaagcctttgagaataccagaagcacatcctgctc
tgggtcgaagctgctgcctgggctgcagggggcgctgatctctcagcaaa
tggccttcgggaaggatttgtctaatgctgctttcgtgagtcagttaggc
cacccagctcagtcctgagccggttttctctggactccccaggtggatgt
aggggtgaaatagataaacaaccaaactttttttttttgtttgttttgtt
ttttttttttgttttttcgagacagggtttctctgtgtagctctagctga
cctggaactcactctgtagaccaggctggactcgaactcagaaatccacc
tgcctctgcctcccaagtgctgggattaaaggcgtgcgccgccgccacca
ccacctggctacaaccaaactcttaaagcaacggctctcaacctgtgagt
caagacccatttgagggttggacaactctttcacagggagtcccctaaga
ccattggaaagcagacatttacaattatgattcatatcagtaaaattgta
gttatgaagtagccacgaagattatttaatggctgggggtcaaccacaac
atgaggaactgtattaagggtccatagcgttagggaggttgagaaaccgt
tgctctaggtttaggatcagactagagagactaagagagaattcctcagc
agtggagccagcagagaggttctcagccttgccatgggttgaaaggttcc
ctgggggcgttgcttcttatgctcagcctgatgaacatcctggactggag
tgcgattgcctggcagcttgagtttggggaataaaatgctagcttatgtg
gatcgccttcaaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57033343_57034527
seq2: B6Ng01-193D22.b_44_1246 (reverse)

seq1  GTATAGACCCACACTCAAAAACTCTAAAAACATTTTATGCCCACTACTTT  50
      ||||||||||| |||| ||| ||  |||||||||||||||||||||||||
seq2  GTATAGACCCA-ACTC-AAACCTTAAAAAACATTTTATGCCCACTACTTT  48

seq1  C-TATAAATCCTG-CTGATGAA-TGCATGCAGGATGAGG-TGA-TGTG-T  94
      | |||||||| || |||||||| |||||||  ||||||| ||| |||| |
seq2  CTTATAAATCTTGCCTGATGAATTGCATGCCAGATGAGGTTGACTGTGTT  98

seq1  GATGATA-GCCA-CACA-TCA-TCAAGGTGAAGAACAGGGCTAGAG--AT  138
      ||||||| |||| |||| ||| |||||||| ||| |||||||||||  ||
seq2  GATGATAGGCCACCACATTCATTCAAGGTG-AGACCAGGGCTAGAGGAAT  147

seq1  -GTGCATATAGAAATCTG-AAGGATGAAGACCA-GGAAGAGACTGGGGCT  185
       ||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GGTGCATATAGAAATCTGAAAGGATGAAGACCAGGGAAGAGACTGGGGCT  197

seq1  CCTGAGGG--TGTGGTGA--GGGGAAAGTCAAAAGAGTCCTATGC-AAAA  230
       |||||||   |||||||  ||| ||||||||||||||||||||| ||||
seq2  TCTGAGGGGTGGTGGTGAAGGGGAAAAGTCAAAAGAGTCCTATGCAAAAA  247

seq1  GCAATGGTTT-GGTTTAAAAGTTCTGGGATCTACCATGTATGATGGTCTA  279
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GCAATGGTTTGGGTTTAAAAGTCCTGGGATCTACCATGTATGATGGTCTA  297

seq1  TGTCCATCATTCAGGGGAAGAAACAGGGACCGGACCTGTAGCTCAGTGAA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCATTCAGGGGAAGAAACAGGGACCGGACCTGTAGCTCAGTGAA  347

seq1  TGAGCAACCATCTAACCTGACCATGCTCTGAGTTCATTTCCCATTATTGA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACCATCTAACCTGACCATGCTCTGAGTTCATTTCCCATTATTGA  397

seq1  GAAAACAAAAGCAAAACAAAACAAAATCTTTTAAGAAACTGGATACCACA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAAGCAAAACAAAACAAAATCTTTTAAGAAACTGGATACCACA  447

seq1  TGAGAGAAAGGGCTGCATCAGAGGCTAGGATATGTTTCTTCCATTTGTGC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAAAGGGCTGCATCAGAGGCTAGGATATGTTTCTTCCATTTGTGC  497

seq1  TTTTCTTACATGTTTCATTCCTTCATTTCTTACATCTTCAATTCCTTATC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACATGTTTCATTCCTTCATTTCTTACATCTTCAATTCCTTATC  547

seq1  AGAAAAGGAAATGCAATCCTGTAGGACAAACTCATTTCACCTGCCTCTGT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAATGCAATCCTGTAGGACAAACTCATTTCACCTGCCTCTGT  597

seq1  TGCAGAACTCTTATGCATGGATGAGAACCTTGCTCTTCAGCAGATCCAAC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACTCTTATGCATGGATGAGAACCTTGCTCTTCAGCAGATCCAAC  647

seq1  TGATATGTGATTGACAGACACCTGTCACCATGGCGGATAGCAAAATCTTT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTGATTGACAGACACCTGTCACCATGGCGGATAGCAAAATCTTT  697

seq1  CTTCTGGGCTCCATGTCTTATCGAGGGCCACAAACGTAAATGCTCTAGAG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGCTCCATGTCTTATCGAGGGCCACAAACGTAAATGCTCTAGAG  747

seq1  CCCAGTAGACAATGGAATCGGCACACGAAATCGATCTTGGTGGGAACTAC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGACAATGGAATCGGCACACGAAATCGATCTTGGTGGGAACTAC  797

seq1  ACTGGCCAGGAGGCAAAGCTTGCATTCACACTGTAGGAGGCACCACCTAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCAGGAGGCAAAGCTTGCATTCACACTGTAGGAGGCACCACCTAC  847

seq1  TGGCCTCATGGGCACAGAGGCTGGTCTTCTGAATTCTGAGAGAAGCCAGA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCATGGGCACAGAGGCTGGTCTTCTGAATTCTGAGAGAAGCCAGA  897

seq1  AACACAGACAGTATGTAGGAAGCTGAGTTATAGATGATCATAGCTTATAT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACAGTATGTAGGAAGCTGAGTTATAGATGATCATAGCTTATAT  947

seq1  AAATGTATTGAAAAACTCATTATGGCCAAATAAAATAAATCATCAATGGC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTGAAAAACTCATTATGGCCAAATAAAATAAATCATCAATGGC  997

seq1  TAGGTGGGCCTATGGGGTTCCAGTGTGCAAACCGAGTTTTATCTGGGGAC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGCCTATGGGGTTCCAGTGTGCAAACCGAGTTTTATCTGGGGAC  1047

seq1  TATCTAGCCACCCTTTGCCTTCTCTGGCAGATTAAGGGACTGGGGGAGGG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGCCACCCTTTGCCTTCTCTGGCAGATTAAGGGACTGGGGGAGGG  1097

seq1  GTGAAACTAATGTTTCCTCTTTTGCTGCTTGGTAGCGTGTTTGTTGAGAA  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTAATGTTTCCTCTTTTGCTGCTTGGTAGCGTGTTTGTTGAGAA  1147

seq1  AAAGAGTTGGACAATGGGCTAAAATCTATTTTAGACTACCTGTGGGTTTG  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTGGACAATGGGCTAAAATCTATTTTAGACTACCTGTGGGTTTG  1197

seq1  GAATTC  1185
      ||||||
seq2  GAATTC  1203

seq1: chr18_56918671_56919730
seq2: B6Ng01-193D22.g_64_1130

seq1  GAATTCAATTAGATTGTGTGAAAAGATCATGGCAAGATAGCAGGTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGATTGTGTGAAAAGATCATGGCAAGATAGCAGGTTGTAA  50

seq1  GTGCATAGGAATTTGAAAGTGAGCTTAAAATGAATTAACCAAGAGAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAGGAATTTGAAAGTGAGCTTAAAATGAATTAACCAAGAGAACTG  100

seq1  AGGTCAGGGTAAGGAGATTTGGTATAGAATGGTGGGGTTTCTCTTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGTAAGGAGATTTGGTATAGAATGGTGGGGTTTCTCTTGAGTT  150

seq1  GTACGTGCACATGGTGTGTCTCAGAATCAATACTTTTCCTTGAATTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTGCACATGGTGTGTCTCAGAATCAATACTTTTCCTTGAATTAATC  200

seq1  AACGGGTCAGCAAGGAAAGCCTTTGAGAATACCAGAAGCACATCCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGTCAGCAAGGAAAGCCTTTGAGAATACCAGAAGCACATCCTGCTC  250

seq1  TGGGTCGAAGCTGCTGCCTGGGCTGCAGGGGGCGCTGATCTCTCAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCGAAGCTGCTGCCTGGGCTGCAGGGGGCGCTGATCTCTCAGCAAA  300

seq1  TGGCCTTCGGGAAGGATTTGTCTAATGCTGCTTTCGTGAGTCAGTTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTCGGGAAGGATTTGTCTAATGCTGCTTTCGTGAGTCAGTTAGGC  350

seq1  CACCCAGCTCAGTCCTGAGCCGGTTTTCTCTGGACTCCCCAGGTGGATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCTCAGTCCTGAGCCGGTTTTCTCTGGACTCCCCAGGTGGATGT  400

seq1  AGGGGTGAAATAGATAAACAACCAAACTTTTTTTTTTTGTTTGTTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAAATAGATAAACAACCAAACTTTTTTTTTTTGTTTGTTTTGTT  450

seq1  TTTTTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCTCTAGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTTTTTCGAGACAGGGTTTCTCTGTGTAGCTCTAGCTGA  500

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGACTCGAACTCAGAAATCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGACTCGAACTCAGAAATCCACC  550

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCGCCGCCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCGCCGCCACCA  600

seq1  CCACCTGGCTACAACCAAACTCTTAAAGCAACGGCTCTCAACCTGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGGCTACAACCAAACTCTTAAAGCAACGGCTCTCAACCTGTGAGT  650

seq1  CAAGACCCATTTGAGGGTTGGACAACTCTTTCACAGGGAGTCCCCTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCATTTGAGGGTTGGACAACTCTTTCACAGGGAGTCCCCTAAGA  700

seq1  CCATTGGAAAGCAGACATTTAC-ATTATGATTCATATCAGTAAAATTGTA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATTGGAAAGCAGACATTTACAATTATGATTCATATCAGTAAAATTGTA  750

seq1  GTTATGAAGTAGCCACGAAGATTATTTAATGGCTGGGGGTC-ACCACAAC  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTATGAAGTAGCCACGAAGATTATTTAATGGCTGGGGGTCAACCACAAC  800

seq1  ATGAGGAACTGTATTAAGGGT-CATAGCGTTAGGGAGGTTGAG-AACCGT  846
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  ATGAGGAACTGTATTAAGGGTCCATAGCGTTAGGGAGGTTGAGAAACCGT  850

seq1  TGCTCTAGG-TTAAGATCAGACTAGAGAGACTAGGAGAG-ATTTCTCAGC  894
      ||||||||| ||| ||||||||||||||||||| ||||| ||| ||||||
seq2  TGCTCTAGGTTTAGGATCAGACTAGAGAGACTAAGAGAGAATTCCTCAGC  900

seq1  AGTGGAGCCAGCAGAGAGGTTC-CAGCC-TGGCATGGGGTTGAAGGTTCC  942
      |||||||||||||||||||||| ||||| || |||||| |  ||||||||
seq2  AGTGGAGCCAGCAGAGAGGTTCTCAGCCTTGCCATGGGTTGAAAGGTTCC  950

seq1  CTGGGGGCGTGGCTCTTTATGCTCAG-CTGATG-ACAT-CTGGACTGGAG  989
      |||||||||| |||  |||||||||| |||||| |||| |||||||||||
seq2  CTGGGGGCGTTGCTTCTTATGCTCAGCCTGATGAACATCCTGGACTGGAG  1000

seq1  TGCGGAATTGCTGGGCAGCTTGGAGTTGGGGGACATAAATGCTAGGCTTT  1039
      ||||  |||||  |||||||| ||||| |||||   |||||||||  | |
seq2  TGCG--ATTGCCTGGCAGCTT-GAGTTTGGGGAATAAAATGCTAGCTTAT  1047

seq1  GTGTGTTGCCTTCAAAGAGAG  1060
      |||  | ||||||||| ||||
seq2  GTGGATCGCCTTCAAA-AGAG  1067