BAC Information

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BAC

Clone NameB6Ng01-193E01
Chromosome18 (Build37)
Map Location 20,205,700 - 20,206,812
singlet/doubletsinglet
Overlap geneDsc2
Upstream geneLOC665624, LOC665629, Dsc3
Downstream geneDsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193E01.bB6Ng01-193E01.g
ACCGA016277GA016278
length1,1081,165
definitionB6Ng01-193E01.b B6Ng01-193E01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgggtcccttcccacttttccttcaacaggtatagtttactt
tggctgtagaagtctgtcatttccactttcaaaaataatcagtaactatt
aaaaaaataattgtgtgagggctggaaatgtgtctcagtgatagaatgct
tgcctgctatacttgagactttgagtgaatccttactaattaaaacacaa
aagtatataaaatagttgttacatgtaaatatagggatggaaggtttagg
taccatgcttcaacataggtgtgtaaatatttcttaatagttgtgcacac
attttgcagctttagtcatgcaaatataatctataagaactgtaaactca
tcctgtattctaaagcagtatcggtactgttcattttatatactattata
aagatagctgctttcaagtgcatcatatattttgaccaaattcactccca
cctactcacttctttctcccttcctcttcccactaccctcattccttcct
ctactcccccttctgctttcacgccatatagaaataggtttatacatgtc
tatatggtctagattcctgaatgggtgaaaatgtggtgtttttcttccag
agcttggcttatccacatagacaaggtcttgtctctcagccttaggctgg
ccttacctcctagttctccaactctctttcctagtactgggactacaggc
agatgccaccacacctggtgaaaaccagcctttaaaatactcggccaaat
acaataaaacctcagccttaaattgagtggcaacagataatcactcagta
tcctcttgctttagttttcagtacagagaagtcccaagtgtttggttcat
gtacgtagtgtttagtttacaaagtatttttttgattgcttctatgggat
tttgcaagtatcttgattttgcaaattttcatgtaatttcttattatatt
gctgcattttttctgaaaactgaatgcaacagggaataattgtttattta
gtaactgggcagttggagaatgattaaatacattgtaccagtctgctgat
aaacattgtcttatgttttactatctcgtctttgatccaggtctggaccc
agctcaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcactctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttgggagctgagatg
aaaggatggaccatgtagagactgccatatccagggatccacccccataa
tcagcatccaaacgctgacaccattgcatatactagcagattttatcgaa
aggacccagatgtagctgttttcttgtggagaactaatgcccggggccta
gcaaacacaagaagtggatgcttcaacagtcagctatggatggatccaca
ggctcccaatggagggagctagaagaaaggtagccaggagctaaagggat
ctgcaacccttataggtggaacaacatttgactacagtacccggagctct
gactctagctcgctatgtatccaagatgcttagttccgccattcactgga
agagcatgaactacgactggtcgtactgaatgctaggcctaatagcggga
gcatcgttgcctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_20205700_20206812
seq2: B6Ng01-193E01.b_42_1149 (reverse)

seq1  TTTGAGCTGTGT-CAGA-CTGGATCTAAAGAGCAGATAGTATAAACATAA  48
      ||||||||| || |||| ||||||| |||||  |||||||| ||||||||
seq2  TTTGAGCTGGGTCCAGACCTGGATC-AAAGACGAGATAGTA-AAACATAA  48

seq1  GACATATGTTTATTTCAGCAGAACTTGTAC-ATGTATTTTTATTCAATCT  97
      |||| |||||||  ||||||| ||| |||| |||||  |||| ||| |||
seq2  GACA-ATGTTTA--TCAGCAG-ACTGGTACAATGTA--TTTAATCATTCT  92

seq1  C--ACTG-CCAGTTACTAAAATAAACAATTATCCCCTGTTGCATTCAGTT  144
      |  |||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  CCAACTGCCCAGTTACT-AAATAAACAATTATTCCCTGTTGCATTCAGTT  141

seq1  TTCAG-AAAAATGCAGCAATATAATAAGAAATTACAATGAAAATTTTGCA  193
      ||||| ||||||||||||||||||||||||||||| ||||||| ||||||
seq2  TTCAGAAAAAATGCAGCAATATAATAAGAAATTAC-ATGAAAA-TTTGCA  189

seq1  AAATCAAGATACTTGCAAAATCCCATAGAAGCAAATCAAAAAATACTTTG  243
      ||||||||||||||||||||||||||||||||||   |||||||||||||
seq2  AAATCAAGATACTTGCAAAATCCCATAGAAGCAATCAAAAAAATACTTTG  239

seq1  TAAACTAAACACTACGTACATGAACCAAACACTTGGGACTTCTCTGTACT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAACACTACGTACATGAACCAAACACTTGGGACTTCTCTGTACT  289

seq1  GAAAACTAAAGCAAGAGGATACTGAGTGATTATCTGTTGCCACTCAATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAAAGCAAGAGGATACTGAGTGATTATCTGTTGCCACTCAATTT  339

seq1  AAGGCCTGAGGTTTTATTGTATTTGGCCGAGTATTTTAAAGGCTGGTTTT  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGG-CTGAGGTTTTATTGTATTTGGCCGAGTATTTTAAAGGCTGGTTTT  388

seq1  CACCAGGTGTGGTGGCATCTGCCTGTAGTCCCAGTACTAGGAAAGAGAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTGTGGTGGCATCTGCCTGTAGTCCCAGTACTAGGAAAGAGAGT  438

seq1  TGGAGAACTAGGAGGTAAGGCCAGCCTAAGGCTGAGAGACAAGACCTTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACTAGGAGGTAAGGCCAGCCTAAGGCTGAGAGACAAGACCTTGT  488

seq1  CTATGTGGATAAGCCAAGCTCTGGAAGAAAAACACCACATTTTCACCCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGATAAGCCAAGCTCTGGAAGAAAAACACCACATTTTCACCCAT  538

seq1  TCAGGAATCTAGACCATATAGACATGTATAAACCTATTTCTATATGGCGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCTAGACCATATAGACATGTATAAACCTATTTCTATATGGCGT  588

seq1  GAAAGCAGAAGGGGGAGTAGAGGAAGGAATGAGGGTAGTGGGAAGAGGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGAAGGGGGAGTAGAGGAAGGAATGAGGGTAGTGGGAAGAGGAA  638

seq1  GGGAGAAAGAAGTGAGTAGGTGGGAGTGAATTTGGTCAAAATATATGATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGAAGTGAGTAGGTGGGAGTGAATTTGGTCAAAATATATGATG  688

seq1  CACTTGAAAGCAGCTATCTTTATAATAGTATATAAAATGAACAGTACCGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAAGCAGCTATCTTTATAATAGTATATAAAATGAACAGTACCGA  738

seq1  TACTGCTTTAGAATACAGGATGAGTTTACAGTTCTTATAGATTATATTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTTAGAATACAGGATGAGTTTACAGTTCTTATAGATTATATTTG  788

seq1  CATGACTAAAGCTGCAAAATGTGTGCACAACTATTAAGAAATATTTACAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTAAAGCTGCAAAATGTGTGCACAACTATTAAGAAATATTTACAC  838

seq1  ACCTATGTTGAAGCATGGTACCTAAACCTTCCATCCCTATATTTACATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTTGAAGCATGGTACCTAAACCTTCCATCCCTATATTTACATGT  888

seq1  AACAACTATTTTATATACTTTTGTGTTTTAATTAGTAAGGATTCACTCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTATTTTATATACTTTTGTGTTTTAATTAGTAAGGATTCACTCAA  938

seq1  AGTCTCAAGTATAGCAGGCAAGCATTCTATCACTGAGACACATTTCCAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAAGTATAGCAGGCAAGCATTCTATCACTGAGACACATTTCCAGC  988

seq1  CCTCACACAATTATTTTTTTAATAGTTACTGATTATTTTTGAAAGTGGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAATTATTTTTTTAATAGTTACTGATTATTTTTGAAAGTGGAA  1038

seq1  ATGACAGACTTCTACAGCCAAAGTAAACTATACCTGTTGAAGGAAAAGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGACTTCTACAGCCAAAGTAAACTATACCTGTTGAAGGAAAAGTG  1088

seq1  GGAAGGGACCCAATGAATTC  1113
      ||||||||||||||||||||
seq2  GGAAGGGACCCAATGAATTC  1108