BAC Information

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BAC

Clone NameB6Ng01-193H01
Chromosome18 (Build37)
Map Location 49,079,953 - 49,237,288
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H01.bB6Ng01-193H01.g
ACCGA016411GA016412
length7161,140
definitionB6Ng01-193H01.b B6Ng01-193H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,236,573 - 49,237,288)(49,079,953 - 49,081,123)
sequence
gaattctgttcaattaggtgattattaatttgtttcctaagttcccatga
tcctaggacaacagcagttacaatacagatgtgaatatgactttattgaa
atgattaaacaattaatttataaaattgaaacaattgatgcaattcagct
ttacaaagaaataaagtgtttttgtgtttaaatgcacagcttgtaatcaa
gagcacaaagttggaatggaaaaaaaaatggattctataaacaggttgag
atattgcacatttccctccagatctgctggaagatgagggcaaaggatct
ctgtgagtgactcatttcttggggaaaatgaaagagaaaatgatagatgg
aaaaatgacactagaaagatagaaaaacctaagtgtcaaagagacaaata
gatttcaacacagcaaactagagcaggaactggttagttgccagctggac
aattaatcaaaatacacagcaggaagaaaaactacactgtaaagaccata
aagaacagcatgcccgctgacacccagagttcggggttttaaattggaaa
gacttggtgtttaaaggagagatttatcatacttcccatctcaaagatga
ggggcaaaactcaagtgttgagaagtatgccttgatttctattttctcca
gaaaaaaatataaaaagacaagtcaccctttagtgtgtgtgtgtatgtat
atgtgtgtatagtgtg

gaattcaatggtctatgtcaacaacactcagtattatcaataattttaac
ctcataatgttttataaatcattttcaaggcaagcataattaactgcatt
acaaaaacttatgtaaacttcaaaaaactggggttttttttgaacggatg
aaatcatatattgcctgaagaaaaagactatcgtaaacatcagaaaactt
tttaacaagtaatgtttccatatataatatttgctttgttattaataatt
tatttaaatattaatgtgccctctagttaatatgtatccctcagttatca
cctcagacatcattgcatcttaagagagctctgtgtttatccaactaggt
agtccctcgcttccttgtctatagcctgtttattcattacctctatttat
cagaaatggctaggattctcaaagtgcagtccatggtcaagaattatgat
tttcaccttggcatgtgttaggaaactatgtcttcaggatcaactccaga
cacactatatcagaatcaatgttcatgcatcttgggaagctcctggttaa
caaaccttccaagtaactgttacaagctacctgaagagtctggggcccct
gtgtttactgtagaagttaagctgagtaatgaaaggaaactgtataattt
gtggttttagcccagaatctgaatatcatgtctcacataaattacctgtt
tctcaaagtgtcatgcttacagagatacagcctgcaatagtgaaaatgaa
gccaaatcccactgtgtccttgttgtttcatgttttaagcattgcagatt
tactaatttctgaatacacactatattctcatggggacaatttgggagcc
tcctttagtacagatgaaggatgagggccagaatactgggaaccaaaatg
ggtcagtgatcagcagaaccaaaggctattcttctgagagatcagagtgt
agccttttatacccatgaaatccacatagacttagatgcatggaaatatc
agaaatacaattaggataatacatctactcagctatagtatgtattgtgc
atatgtaaataatggccaaggtaatgacttgctacaagttgtgtatgagc
ccaatggcatggctcattccatgccataagatctgcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49236573_49237288
seq2: B6Ng01-193H01.b_33_748 (reverse)

seq1  CACACTATACACACATATACATACACACACACACTAAAGGGTGACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATACACACATATACATACACACACACACTAAAGGGTGACTTGTC  50

seq1  TTTTTATATTTTTTTCTGGAGAAAATAGAAATCAAGGCATACTTCTCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTTTTTTCTGGAGAAAATAGAAATCAAGGCATACTTCTCAAC  100

seq1  ACTTGAGTTTTGCCCCTCATCTTTGAGATGGGAAGTATGATAAATCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTTTTGCCCCTCATCTTTGAGATGGGAAGTATGATAAATCTCTC  150

seq1  CTTTAAACACCAAGTCTTTCCAATTTAAAACCCCGAACTCTGGGTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACACCAAGTCTTTCCAATTTAAAACCCCGAACTCTGGGTGTCAG  200

seq1  CGGGCATGCTGTTCTTTATGGTCTTTACAGTGTAGTTTTTCTTCCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATGCTGTTCTTTATGGTCTTTACAGTGTAGTTTTTCTTCCTGCTG  250

seq1  TGTATTTTGATTAATTGTCCAGCTGGCAACTAACCAGTTCCTGCTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTGATTAATTGTCCAGCTGGCAACTAACCAGTTCCTGCTCTAGT  300

seq1  TTGCTGTGTTGAAATCTATTTGTCTCTTTGACACTTAGGTTTTTCTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTTGAAATCTATTTGTCTCTTTGACACTTAGGTTTTTCTATCT  350

seq1  TTCTAGTGTCATTTTTCCATCTATCATTTTCTCTTTCATTTTCCCCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTCATTTTTCCATCTATCATTTTCTCTTTCATTTTCCCCAAGA  400

seq1  AATGAGTCACTCACAGAGATCCTTTGCCCTCATCTTCCAGCAGATCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCACTCACAGAGATCCTTTGCCCTCATCTTCCAGCAGATCTGGA  450

seq1  GGGAAATGTGCAATATCTCAACCTGTTTATAGAATCCATTTTTTTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTGCAATATCTCAACCTGTTTATAGAATCCATTTTTTTTTCCA  500

seq1  TTCCAACTTTGTGCTCTTGATTACAAGCTGTGCATTTAAACACAAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTTGTGCTCTTGATTACAAGCTGTGCATTTAAACACAAAAACA  550

seq1  CTTTATTTCTTTGTAAAGCTGAATTGCATCAATTGTTTCAATTTTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTTTGTAAAGCTGAATTGCATCAATTGTTTCAATTTTATAAA  600

seq1  TTAATTGTTTAATCATTTCAATAAAGTCATATTCACATCTGTATTGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTTAATCATTTCAATAAAGTCATATTCACATCTGTATTGTAAC  650

seq1  TGCTGTTGTCCTAGGATCATGGGAACTTAGGAAACAAATTAATAATCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTCCTAGGATCATGGGAACTTAGGAAACAAATTAATAATCACC  700

seq1  TAATTGAACAGAATTC  716
      ||||||||||||||||
seq2  TAATTGAACAGAATTC  716


seq1: chr18_49079953_49081123
seq2: B6Ng01-193H01.g_61_1200

seq1  GAATTCAATGGTCTATGTCAACAACACTCAGTATTATCAATAATTTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTCTATGTCAACAACACTCAGTATTATCAATAATTTTAAC  50

seq1  CTCATAATGTTTTATAAATCATTTTCAAGGCAAGCATAATTAACTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATGTTTTATAAATCATTTTCAAGGCAAGCATAATTAACTGCATT  100

seq1  ACAAAAACTTATGTAAACTTCAAAAAACTGGGGTTTTTTTTGAACGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTTATGTAAACTTCAAAAAACTGGGGTTTTTTTTGAACGGATG  150

seq1  AAATCATATATTGCCTGAAGAAAAAGACTATCGTAAACATCAGAAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATATTGCCTGAAGAAAAAGACTATCGTAAACATCAGAAAACTT  200

seq1  TTTAACAAGTAATGTTTCCATATATAATATTTGCTTTGTTATTAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAGTAATGTTTCCATATATAATATTTGCTTTGTTATTAATAATT  250

seq1  TATTTAAATATTAATGTGCCCTCTAGTTAATATGTATCCCTCAGTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAATATTAATGTGCCCTCTAGTTAATATGTATCCCTCAGTTATCA  300

seq1  CCTCAGACATCATTGCATCTTAAGAGAGCTCTGTGTTTATCCAACTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACATCATTGCATCTTAAGAGAGCTCTGTGTTTATCCAACTAGGT  350

seq1  AGTCCCTCGCTTCCTTGTCTATAGCCTGTTTATTCATTACCTCTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTCGCTTCCTTGTCTATAGCCTGTTTATTCATTACCTCTATTTAT  400

seq1  CAGAAATGGCTAGGATTCTCAAAGTGCAGTCCATGGTCAAGAATTATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGGCTAGGATTCTCAAAGTGCAGTCCATGGTCAAGAATTATGAT  450

seq1  TTTCACCTTGGCATGTGTTAGGAAACTATGTCTTCAGGATCAACTCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTGGCATGTGTTAGGAAACTATGTCTTCAGGATCAACTCCAGA  500

seq1  CACACTATATCAGAATCAATGTTCATGCATCTTGGGAAGCTCCTGGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATATCAGAATCAATGTTCATGCATCTTGGGAAGCTCCTGGTTAA  550

seq1  CAAACCTTCCAAGTAACTGTTACAAGCTACCTGAAGAGTCTGGGGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTCCAAGTAACTGTTACAAGCTACCTGAAGAGTCTGGGGCCCCT  600

seq1  GTGTTTACTGTAGAAGTTAAGCTGAGTAATGAAAGGAAACTGTATAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACTGTAGAAGTTAAGCTGAGTAATGAAAGGAAACTGTATAATTT  650

seq1  GTGGTTTTAGCCCAGAATCTGAATATCATGTCTCACATAAATTACCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAGCCCAGAATCTGAATATCATGTCTCACATAAATTACCTGTT  700

seq1  TCTCAAAGTGTCATGCTTACAGAGATACAGCCTGCAATAGTGAAAATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGTGTCATGCTTACAGAGATACAGCCTGCAATAGTGAAAATGAA  750

seq1  GCCAAATCCCACTGTGTCCTTGTTGTTTCATGTTTTAAGCATTGCAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCCCACTGTGTCCTTGTTGTTTCATGTTTTAAGCATTGCAGATT  800

seq1  TACTAATTTCTGAATACACACTATATTCTCATGGGGACAATTT-GGAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACTAATTTCTGAATACACACTATATTCTCATGGGGACAATTTGGGAGCC  850

seq1  TCCTTTAGTACAGATGAAGGATGAGGGCCAGAAATACTGGGAACCAAAAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCTTTAGTACAGATGAAGGATGAGGGCCAG-AATACTGGGAACCAAAAT  899

seq1  -GGTCAGTGATCAGCAGAACCAAAGGCTATTCTTCTGAGAAGATTCAGAG  948
       |||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  GGGTCAGTGATCAGCAGAACCAAAGGCTATTCTTCTGAG-AGA-TCAGAG  947

seq1  TGTAGCC-TTTATAACCATGAAAT-CACATAGACTTAGGATGCATGGAAA  996
      ||||||| |||||| ||||||||| |||||||||||| ||||||||||||
seq2  TGTAGCCTTTTATACCCATGAAATCCACATAGACTTA-GATGCATGGAAA  996

seq1  TAATCAGAAATAACAAATTAAGATAATACATCCTACTCAGCTATTAGTAT  1046
      | ||||||||||   ||||| |||||||||| ||||||||||| ||||||
seq2  T-ATCAGAAATA--CAATTAGGATAATACAT-CTACTCAGCTA-TAGTAT  1041

seq1  GTATTGTGCCATATGTAAAATATATGG-CAAAGTAATGACATTTTGGCCC  1095
      |||||||| ||||||| ||||| |||| ||| ||||||||   |||   |
seq2  GTATTGTG-CATATGT-AAATA-ATGGCCAAGGTAATGAC---TTG---C  1082

seq1  TACAAAGTATGTTGTATATGAAGCCCCATTGACAATGGTCTTCTAATATT  1145
      |||||     ||||| |||||   |||| || ||  | ||       |||
seq2  TACAA-----GTTGTGTATGA--GCCCAATGGCATGGCTC-------ATT  1118

seq1  CTCATGCCACTAAAGTATCTGCATGA  1171
      | ||||||| |||   ||||||||||
seq2  C-CATGCCA-TAA--GATCTGCATGA  1140


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