BAC Information

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BAC

Clone NameB6Ng01-193K22
Chromosome18 (Build37)
Map Location 24,000,439 - 24,123,651
singlet/doubletdoublet
Overlap geneMapre2, EG665813, LOC100040623, Zfp397
Upstream geneNol4, LOC100040579, LOC665797, Dtna
Downstream geneC230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193K22.bB6Ng01-193K22.g
ACCGA016585GA016586
length1,132747
definitionB6Ng01-193K22.b B6Ng01-193K22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,000,439 - 24,001,598)(24,123,094 - 24,123,651)
sequence
gaattcactacttaaaaaacaaaaacaaaaaacccagcagaagtaatttc
ctgcctcttctcaaccctgtcaccctctttaaatcctctattgttgatgc
tttggctatctgactaaatccctaagtaagtaccatgaggccttcctgct
agtttgccttccttctaatatggagttgtgctcagataacaaaatgtcct
gaaacaaacctgggatgtcaataaatgagcttattattcagcagttttct
gttatatagcacagtgcacagaggctctgtggtagctgctctctgttctc
tgtggctgctgggaccttctcccgtgccaagctgggtctgctgaactctt
agcctttaggccccttttggggagctgttggggaaggtgtatccttctgt
aggaagtagctgttagggatgctgttgatggtgtgacagctagtgagctt
gtctgcggtgagtgacaagagtgaggagcctgtgacctgaaagaaaaggg
caaaggtttccacctgtagaggggatgacaaggcacctaacccagggaca
ggaacctctgtaagcaaaagaatgttctgtgggactgagctggaggctca
tggtggtccattcacaccactgtcttgcatgtgctcagagttccactttg
agggctcccaccccttttatcattgcttcctgaccgcagtcagcaaagaa
cctcgaagactaaaaagcaatgctgagttagacttgaccctgtgtgtggg
atgatggccagtttctctctagacttctccctgacccacttagcacatct
gcatccctccacttgcacatctgcatccctgcgtttgcatatctgcatcc
ctgcgtttattttgtacttgcagttgctttgtgggttttgctgggttttc
tgttctttttctgtttttctgaattttgtatttcagtgttttctgggctt
tccaaacctcagtacttgcccttaaatgaggatcattactgtaaaaatgt
tttagagcacaattcatggaattccacctggctctgctccaagtgcctgg
attaagatgtggcacatacagaatatgtttccattcgcgtagccgagggc
attccccatgtttactcagatggcattggcta
gaattcacagtggtgaaaaaccgtataaatgttgtgactgtggaaaagct
tttgggagcaacacagggctcattaggcataggagaattcatactggaga
gaaaccttatggttgtgatgaatgtgggagagccttcagccaatgttcta
ctcttattcagcataagaggattcacagtggagaaaaacattatagttgt
gatgaatgtgggaaagccttcatccagagctctgcccttattcagcataa
gaagattcacagtggagacaaaagctatgaatgtactgaatgtggtaagg
ctttttggacaagttatgttcttagggaacatcaaagaatccacactggt
gagaaaccttataaatgtaatgaatgtggaaaatcctttaatagaagctc
agcactcactgtgcaccagagaactcactctggggagaaaccttatgaat
gtaatgaatgcaggaaaatatttaggcataggtcaggccttgtgcagcat
cagagaacacataccagagttcagctctaagggtcagtggttgtacaatt
gtgaaatgcaaggaattcactttgaaggtgagactccacaaaagatagag
aagtttcctgatagcaggatttttgtctttccagcccagttctgtaaaaa
gagatccacacaaaatgtttgcatattgaaagaagaattttatccaaaac
ttgtctacaaagaatggtattttctaagggggttggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24000439_24001598
seq2: B6Ng01-193K22.b_42_1173

seq1  GAATTCACTACTTAAAAAACAAAAACAAAAAACCCAGCAGAAGTAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACTTAAAAAACAAAAACAAAAAACCCAGCAGAAGTAATTTC  50

seq1  CTGCCTCTTCTCAACCCTGTCACCCTCTTTAAATCCTCTATTGTTGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTTCTCAACCCTGTCACCCTCTTTAAATCCTCTATTGTTGATGC  100

seq1  TTTGGCTATCTGACTAAATCCCTAAGTAAGTACCATGAGGCCTTCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTATCTGACTAAATCCCTAAGTAAGTACCATGAGGCCTTCCTGCT  150

seq1  AGTTTGCCTTCCTTCTAATATGGAGTTGTGCTCAGATAACAAAATGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCCTTCCTTCTAATATGGAGTTGTGCTCAGATAACAAAATGTCCT  200

seq1  GAAACAAACCTGGGATGTCAATAAATGAGCTTATTATTCAGCAGTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACCTGGGATGTCAATAAATGAGCTTATTATTCAGCAGTTTTCT  250

seq1  GTTATATAGCACAGTGCACAGAGGCTCTGTGGTAGCTGCTCTCTGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAGCACAGTGCACAGAGGCTCTGTGGTAGCTGCTCTCTGTTCTC  300

seq1  TGTGGCTGCTGGGACCTTCTCCCGTGCCAAGCTGGGTCTGCTGAACTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCTGGGACCTTCTCCCGTGCCAAGCTGGGTCTGCTGAACTCTT  350

seq1  AGCCTTTAGGCCCCTTTTGGGGAGCTGTTGGGGAAGGTGTATCCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAGGCCCCTTTTGGGGAGCTGTTGGGGAAGGTGTATCCTTCTGT  400

seq1  AGGAAGTAGCTGTTAGGGATGCTGTTGATGGTGTGACAGCTAGTGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGCTGTTAGGGATGCTGTTGATGGTGTGACAGCTAGTGAGCTT  450

seq1  GTCTGCGGTGAGTGACAAGAGTGAGGAGCCTGTGACCTGAAAGAAAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCGGTGAGTGACAAGAGTGAGGAGCCTGTGACCTGAAAGAAAAGGG  500

seq1  CAAAGGTTTCCACCTGTAGAGGGGATGACAAGGCACCTAACCCAGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTTCCACCTGTAGAGGGGATGACAAGGCACCTAACCCAGGGACA  550

seq1  GGAACCTCTGTAAGCAAAAGAATGTTCTGTGGGACTGAGCTGGAGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCTGTAAGCAAAAGAATGTTCTGTGGGACTGAGCTGGAGGCTCA  600

seq1  TGGTGGTCCATTCACACCACTGTCTTGCATGTGCTCAGAGTTCCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCCATTCACACCACTGTCTTGCATGTGCTCAGAGTTCCACTTTG  650

seq1  AGGGCTCCCACCCCTTTTATCATTGCTTCCTGACCGCAGTCAGCAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCCACCCCTTTTATCATTGCTTCCTGACCGCAGTCAGCAAAGAA  700

seq1  CCTCGAAGACTAAAAAGCAATGCTGAGTTAGACTTGACCCTGTGTGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAGACTAAAAAGCAATGCTGAGTTAGACTTGACCCTGTGTGTGGG  750

seq1  ATGATGGCCAGTTTCTCTCTAGACTTCTCCCTGACCCACTTAGCACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCCAGTTTCTCTCTAGACTTCTCCCTGACCCACTTAGCACATCT  800

seq1  GCATCCCTCCACTTGCACATCTGCATCCCTGCGTTTGCATATCTGCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCTCCACTTGCACATCTGCATCCCTGCGTTTGCATATCTGCATCC  850

seq1  CTGCGTTTATTTTGTACTTGCAGTTGCTTTGT-GGTTTTGCTGGGTTTTC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGCGTTTATTTTGTACTTGCAGTTGCTTTGTGGGTTTTGCTGGGTTTTC  900

seq1  TGTTCTTTTTTCTGTTTTTCTGAATTTTGTATTTCAGTGTTTTTCTGGCC  949
      ||||| ||||||||||||||||||||||||||||||||| |||||||| |
seq2  TGTTC-TTTTTCTGTTTTTCTGAATTTTGTATTTCAGTG-TTTTCTGGGC  948

seq1  TTT-CAAACCTCAGTTACTTGCCCCTTAAAATGA-GATCATTTTCCTTGG  997
      ||| |||||||||| |||||||||  | |||||| |||||  || ||  |
seq2  TTTCCAAACCTCAG-TACTTGCCC--TTAAATGAGGATCA--TTACT--G  991

seq1  GAAAAATGTTTTAGAGGCCACAAATTCATGGAAATCCACCTGCCTCTGCC  1047
       |||||||||||||||  ||| ||||||||||| |||||||| ||||| |
seq2  TAAAAATGTTTTAGAG--CAC-AATTCATGGAATTCCACCTGGCTCTG-C  1037

seq1  TCCAAGTGCTGGGATTAAAGGAATGTGGCACCATAACCAGATTATTGGTT  1097
      |||||||||  |||||||    |||||||| ||||  |||| |||    |
seq2  TCCAAGTGCCTGGATTAA---GATGTGGCA-CATA--CAGAATAT---GT  1078

seq1  TTTCATTCGCCGGTAAGCAGAGGGGCATTCCCCATGTGTTACCTACAGAT  1147
      || |||||||  || ||| || ||||||||||||||| ||||   |||||
seq2  TTCCATTCGC--GT-AGCCGA-GGGCATTCCCCATGT-TTAC--TCAGAT  1121

seq1  GGGCATTTGGCTA  1160
       |||| |||||||
seq2  -GGCA-TTGGCTA  1132

seq1: chr18_24123094_24123651
seq2: B6Ng01-193K22.g_252_809 (reverse)

seq1  CCCCCCCCCCCCAACCCCCTTAGAAAATACCATTCTTTGTAGACAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCAACCCCCTTAGAAAATACCATTCTTTGTAGACAAGTTT  50

seq1  TGGATAAAATTCTTCTTTCAATATGCAAACATTTTGTGTGGATCTCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAATTCTTCTTTCAATATGCAAACATTTTGTGTGGATCTCTTTT  100

seq1  TACAGAACTGGGCTGGAAAGACAAAAATCCTGCTATCAGGAAACTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTGGGCTGGAAAGACAAAAATCCTGCTATCAGGAAACTTCTCT  150

seq1  ATCTTTTGTGGAGTCTCACCTTCAAAGTGAATTCCTTGCATTTCACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTGGAGTCTCACCTTCAAAGTGAATTCCTTGCATTTCACAATT  200

seq1  GTACAACCACTGACCCTTAGAGCTGAACTCTGGTATGTGTTCTCTGATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACCACTGACCCTTAGAGCTGAACTCTGGTATGTGTTCTCTGATGC  250

seq1  TGCACAAGGCCTGACCTATGCCTAAATATTTTCCTGCATTCATTACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGGCCTGACCTATGCCTAAATATTTTCCTGCATTCATTACATTC  300

seq1  ATAAGGTTTCTCCCCAGAGTGAGTTCTCTGGTGCACAGTGAGTGCTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTTTCTCCCCAGAGTGAGTTCTCTGGTGCACAGTGAGTGCTGAGC  350

seq1  TTCTATTAAAGGATTTTCCACATTCATTACATTTATAAGGTTTCTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAAAGGATTTTCCACATTCATTACATTTATAAGGTTTCTCACCA  400

seq1  GTGTGGATTCTTTGATGTTCCCTAAGAACATAACTTGTCCAAAAAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATTCTTTGATGTTCCCTAAGAACATAACTTGTCCAAAAAGCCTT  450

seq1  ACCACATTCAGTACATTCATAGCTTTTGTCTCCACTGTGAATCTTCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTCAGTACATTCATAGCTTTTGTCTCCACTGTGAATCTTCTTAT  500

seq1  GCTGAATAAGGGCAGAGCTCTGGATGAAGGCTTTCCCACATTCATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAAGGGCAGAGCTCTGGATGAAGGCTTTCCCACATTCATCACAA  550

seq1  CTATAATG  558
      ||||||||
seq2  CTATAATG  558