BAC Information

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BAC

Clone NameB6Ng01-194A24
Chromosome18 (Build37)
Map Location 47,689,674 - 47,872,631
singlet/doubletdoublet
Overlap geneA730092B10
Upstream geneTicam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Downstream geneLOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194A24.bB6Ng01-194A24.g
ACCGA016859GA016860
length6361,153
definitionB6Ng01-194A24.b B6Ng01-194A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,872,084 - 47,872,631)(47,689,674 - 47,690,830)
sequence
gaattctcaagatgccgaaataaatctaccatatgacctagctataccac
tccttggcatgtggccaaaaggatcaacatcctccttcacagatacttgt
ttagccacattcattgctgttctgctcacgctagctagggaatggaaaca
acctaaataactctcaacggacagacgaacagtgaaaatgaggtataggt
gctacaaaagaattctactcaaatgtaatgaaaaatgaaatcatgatgta
tgcaggtaaagagaggaaactagaacagattacactgagtgaggtaaccc
aaacccaggaaggacaatgccagatgttctctccgatttgtggccagttc
caaacctttatgtgattttataatttggtgtaacaacaggagccaggaaa
ggaaaagagaccatagttggaggggatctgtagagaggggtataataaga
cataagtgttatggaaaaggaaaaatagaaaagagagaggggctctaaat
gaagaaggagagggaagataccacaggagaagaaggagggaaaactaaca
cctaggatgattgaaaaagacataggtcgtcattattttatatttaccaa
aagttataaaagaaatgtgtgtgtgtgtgtgtgtgt
gaattcaactcagggcatcagacttactggcaagcatccttgcctataga
cgccacctctctggtccatttttcattcttgagtttgtctttatgatttt
tggaaatcttttaatgtaaattccctctgtaaaaatgcagataattccat
taaattgtattttaacttttgggtttcaacttgagatttgctcccatcat
aatttttgtttattaaaagaatcttttatttcagttatctatgggttcag
taccagaatacggtgcttctgagttttaaacctatggttaaatcttatca
atgaagtgatgttttgaatatgcaaagagacttccctcaaggcatgatga
atcctttagaatctgtcacttccaagtaataattattcttgactttcata
attacatatctagagcaaagctagaaacgcaccagaaaaaagttgtcaat
ggatacaaaagtgttgctcaacaaataaaaattctgtttacagtgtggag
tcatatcactgtcatcactggggagtgactacagcctttgttttcatgaa
acaagaccggtaagtccctagggtgggtctgaaaagagcggacagaggct
gacttccaagacaaaacagtatttagctcagccatttgctttctaagaac
ctctccgcccagtctatggccccaagaagtgagaaagtgtgtgtgtgtct
atttgcatatatggataagtgcattggtatgcacatttgtgtgcaggaga
acacacacatgcatgcatgcatttatgggtagcctggggacttgcctgtg
agtgtgtatgcaagtgcatgtgggtaccgatgcactcaggtgtggacact
tttcttctgatggtgaagagtggaatagaagaaagaaggcaggctctttt
ttcgtgctttttctcagctcagataaaccactgcagcttcaaagagagtg
atatctagaatggtgcttttaaagtggacaacagttgccacacttggaga
ttagaggcagggcaaagttgaaaaagaagagatggtcggttcgtagaaag
taagttgcctatgctcaatctcataaaccagctgttagctgaatcggaac
cacccattgtggtacagtcttctcggccagtatgaaggagccctctctag
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47872084_47872631
seq2: B6Ng01-194A24.b_138_686 (reverse)

seq1  ACACACACACACACACACACATTTC-TTTATAACTTTTGGTAAATATAAA  49
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACACACACACACACACACACATTTCTTTTATAACTTTTGGTAAATATAAA  50

seq1  ATAATGACGACCTATGTCTTTTTCAATCATCCTAGGTGTTAGTTTTCCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACGACCTATGTCTTTTTCAATCATCCTAGGTGTTAGTTTTCCCT  100

seq1  CCTTCTTCTCCTGTGGTATCTTCCCTCTCCTTCTTCATTTAGAGCCCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCTCCTGTGGTATCTTCCCTCTCCTTCTTCATTTAGAGCCCCTC  150

seq1  TCTCTTTTCTATTTTTCCTTTTCCATAACACTTATGTCTTATTATACCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTATTTTTCCTTTTCCATAACACTTATGTCTTATTATACCCC  200

seq1  TCTCTACAGATCCCCTCCAACTATGGTCTCTTTTCCTTTCCTGGCTCCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAGATCCCCTCCAACTATGGTCTCTTTTCCTTTCCTGGCTCCTG  250

seq1  TTGTTACACCAAATTATAAAATCACATAAAGGTTTGGAACTGGCCACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACACCAAATTATAAAATCACATAAAGGTTTGGAACTGGCCACAAA  300

seq1  TCGGAGAGAACATCTGGCATTGTCCTTCCTGGGTTTGGGTTACCTCACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAGAACATCTGGCATTGTCCTTCCTGGGTTTGGGTTACCTCACTC  350

seq1  AGTGTAATCTGTTCTAGTTTCCTCTCTTTACCTGCATACATCATGATTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATCTGTTCTAGTTTCCTCTCTTTACCTGCATACATCATGATTTC  400

seq1  ATTTTTCATTACATTTGAGTAGAATTCTTTTGTAGCACCTATACCTCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATTACATTTGAGTAGAATTCTTTTGTAGCACCTATACCTCATT  450

seq1  TTCACTGTTCGTCTGTCCGTTGAGAGTTATTTAGGTTGTTTCCATTCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTCGTCTGTCCGTTGAGAGTTATTTAGGTTGTTTCCATTCCCT  500

seq1  AGCTAGCGTGAGCAGAACAGCAATGAATGTGGCTAAACAAGTATCTGTG  548
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCGTGAGCAGAACAGCAATGAATGTGGCTAAACAAGTATCTGTG  549

seq1: chr18_47689674_47690830
seq2: B6Ng01-194A24.g_66_1218

seq1  GAATTCAACTCAGGGCATCAGACTTACTGGCAAGCATCCTTGCCTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCAGGGCATCAGACTTACTGGCAAGCATCCTTGCCTATAGA  50

seq1  CGCCACCTCTCTGGTCCATTTTTCATTCTTGAGTTTGTCTTTATGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCTCTCTGGTCCATTTTTCATTCTTGAGTTTGTCTTTATGATTTT  100

seq1  TGGAAATCTTTTAATGTAAATTCCCTCTGTAAAAATGCAGATAATTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTTTTAATGTAAATTCCCTCTGTAAAAATGCAGATAATTCCAT  150

seq1  TAAATTGTATTTTAACTTTTGGGTTTCAACTTGAGATTTGCTCCCATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTATTTTAACTTTTGGGTTTCAACTTGAGATTTGCTCCCATCAT  200

seq1  AATTTTTGTTTATTAAAAGAATCTTTTATTTCAGTTATCTATGGGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTTTATTAAAAGAATCTTTTATTTCAGTTATCTATGGGTTCAG  250

seq1  TACCAGAATACGGTGCTTCTGAGTTTTAAACCTATGGTTAAATCTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAATACGGTGCTTCTGAGTTTTAAACCTATGGTTAAATCTTATCA  300

seq1  ATGAAGTGATGTTTTGAATATGCAAAGAGACTTCCCTCAAGGCATGATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGATGTTTTGAATATGCAAAGAGACTTCCCTCAAGGCATGATGA  350

seq1  ATCCTTTAGAATCTGTCACTTCCAAGTAATAATTATTCTTGACTTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTAGAATCTGTCACTTCCAAGTAATAATTATTCTTGACTTTCATA  400

seq1  ATTACATATCTAGAGCAAAGCTAGAAACGCACCAGAAAAAAGTTGTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATATCTAGAGCAAAGCTAGAAACGCACCAGAAAAAAGTTGTCAAT  450

seq1  GGATACAAAAGTGTTGCTCAACAAATAAAAATTCTGTTTACAGTGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAAAGTGTTGCTCAACAAATAAAAATTCTGTTTACAGTGTGGAG  500

seq1  TCATATCACTGTCATCACTGGGGAGTGACTACAGCCTTTGTTTTCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCACTGTCATCACTGGGGAGTGACTACAGCCTTTGTTTTCATGAA  550

seq1  ACAAGACCGGTAAGTCCCTAGGGTGGGTCTGAAAAGAGCGGACAGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCGGTAAGTCCCTAGGGTGGGTCTGAAAAGAGCGGACAGAGGCT  600

seq1  GACTTCCAAGACAAAACAGTATTTAGCTCAGCCATTTGCTTTCTAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAAGACAAAACAGTATTTAGCTCAGCCATTTGCTTTCTAAGAAC  650

seq1  CTCTCCGCCCAGTCTATGGCCCCAAGAAGTGAGAAAGTGTGTGTGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGCCCAGTCTATGGCCCCAAGAAGTGAGAAAGTGTGTGTGTGTCT  700

seq1  ATTTGCATATATGGATAAGTGCATTGGTATGCACATTTGTGTGCAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATATATGGATAAGTGCATTGGTATGCACATTTGTGTGCAGGAGA  750

seq1  ACACACACATGCATGCATGCATTTATGGGTAGCCTGGGGACTTGCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGCATGCATGCATTTATGGGTAGCCTGGGGACTTGCCTGTG  800

seq1  AGTGTGTATGCAAGTGCATGTGGGTACCGATGCACTCAGGTGTGGACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATGCAAGTGCATGTGGGTACCGATGCACTCAGGTGTGGACACT  850

seq1  TTTCTTCTGATGGTGAAGAGTGGAATAGAAGAAAGAAGGCA-GCCCTTTT  899
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TTTCTTCTGATGGTGAAGAGTGGAATAGAAGAAAGAAGGCAGGCTCTTTT  900

seq1  TTCGTGC-TTTTCTCAGCTCAGATAAACCACTGCAGCTTCAAAGAGAGTG  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCTTTTTCTCAGCTCAGATAAACCACTGCAGCTTCAAAGAGAGTG  950

seq1  ATATCTAGAATGGTGCTTTTAAAGTGGACAACAGTTGCCACACTTGGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATCTAGAATGGTGCTTTTAAAGTGGACAACAGTTGCCACACTTGGAG-  999

seq1  ATTAGAGGCAAGGCAAAGGGTGAAAAAGAAGAGATTGGTCGGTTTGGTAG  1048
      |||||||||| |||||| | |||||||||||||| ||||||| || ||||
seq2  ATTAGAGGCAGGGCAAA-GTTGAAAAAGAAGAGA-TGGTCGG-TTCGTAG  1046

seq1  AAGGTAGGTTGCTATTGCTCCATCTCATAAACAAGCTGTTAAGCTGATTC  1098
      || ||| |||||   ||||| ||||||||||| ||||||| |||||| ||
seq2  AAAGTAAGTTGCCTATGCTCAATCTCATAAACCAGCTGTT-AGCTGAATC  1095

seq1  GGAACCA-CCATGGTGACACAGTCTTCT--GGCAGAAGGTTTATGAA-GA  1144
      ||||||| |||| |||  ||||||||||  | |||      |||||| ||
seq2  GGAACCACCCATTGTGGTACAGTCTTCTCGGCCAG------TATGAAGGA  1139

seq1  G-CCTCTCTAGGAG  1157
      | ||||||||||||
seq2  GCCCTCTCTAGGAG  1153