BAC Information

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BAC

Clone NameB6Ng01-196G09
Chromosome18 (Build37)
Map Location 39,643,493 - 39,796,119
singlet/doubletdoublet
Overlap geneNr3c1
Upstream geneSpry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196G09.bB6Ng01-196G09.g
ACCGA018553GA018554
length1,1091,093
definitionB6Ng01-196G09.b B6Ng01-196G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,643,493 - 39,644,598)(39,795,032 - 39,796,119)
sequence
gaattcaataatgctcagaaaggaaacattgtctcaatttatttgggtaa
agctttgttctgggtaatagaagttctcagtgctaagtgtaaaacttgca
agcaccgcccacagtcccgttaaggtattctgcctggtgaagagacacta
gtgattaaaatccaaatcatctgtcagtatgaaattaatcatttcctgga
catgacagtgccacactgacatggccatgcctatctctgtaagagcagag
gcccaacaccaacatgaacattttatatgtcattaagtgtaaaagttaaa
gcattatcattatttaatgatctaaggctaagacttattgttcatatccc
agattttataagtcttaatgaaaattcatagtgcatgcaagttaagtttg
ggttccactatttttttcttataataaaaagtgaagttttatgatggttt
tcagggcaagaaattttctaaatgtattatttgtccttgtgtaatcacat
gtttataaatcaatttaacagctccctatagataatcaagtcaattttaa
ctattcctttatgaaagtcaaccacatgaaatctactgtcaaaaatttaa
gattggaaattttaaagcacagcctgtttcttaacatttttaaaacacag
tttatgcaataagaaagtatttaaatttccttactgggagtattttaaat
ccctaattcagaaagttaaagtgttgcaatcgttttctcccaaataaggg
gcaattaattatttgagtaataaataaattagtagtcactactaataggc
aatataaatattaacttcccgtctcttaggatacataaaagaaaaggtga
tttttccttcctcttgataagatacaattaaactatttagaaaatagatc
atagtctaaagttaatttttctaataaaagcctttctatgtgtggagtaa
agagatacttttttgtttgttagtgtctgggaagcccttcagaaaaggga
cttttaagagtataggatatagatcagtgaatagcttgcattgaaatcat
ttcttatggatttgtaagttcagcttcctccagtgactgactgtaatagg
gaaacagtg

gaattcaaaaccttctcccgagaacagcatgcggagtgctttttcatacc
tgctcagctcagaagtcgagggaagcgtttcctttaagcagtaagaacgt
taaaactaaacattcagccagaggtcaccaagccccgccctggagtatgc
attggcataacttccactgtgggtcaatcggtggaagtttccccaggaag
tctttgtttcatgggaagtgaactgtgtaaaaagaactcgctgatcccca
ccaccccccacccccaccccctgattatgaaaagcctctaagctcagctc
caaaaagcaaagtggcattgtagagttgagagcctcctctcagggaaaca
gacctgcgccttttacagtctgctttcaagtagagaggaaatagattagc
tactctcaaggtccacgcaggcaggctgtaatgaaggaggaaggatttgt
gagacagtaagggagattgaagcttaaggactggcagacacaggaagaca
attccatccccagtgtggcagagaaaggtgctatgagtgctttcctataa
gagctggagcttacagcaggacatggagactgagggtgctgggaagatag
aggaagcaggcacaaaatctctagcagctccccaggtcttctgaccaaac
ctagccagcggagctaggaagtcagagagccagagggagcagcccacggg
accgcgagtggggtcgacggaaagtaactcgcgctaggctgatagtttga
aatatgctgttcagactgttttcaaagatgctctggtctgattcagctca
tcagactgtgggtgtcagtaggggagtggcacatggtttgatgtactgcg
aagaggaatttggatttcggaagggtctggacctgctatgacatacagct
gggatccatgagcgagaaaatgtctgggcctgacggatggagacacataa
agtgtttgtgctggaggaaattgccccagctgtgtggagatagggaaaaa
tgagcccaatgatgatttctccccctggccttgtctgtttctcctcccct
ctgtacgtaccctcctttcttcacacaagatgccatcctaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39643493_39644598
seq2: B6Ng01-196G09.b_43_1151

seq1  GAATTCAATAATGCTCAGAAAGGAAACATTGTCTCAATTTATTTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATGCTCAGAAAGGAAACATTGTCTCAATTTATTTGGGTAA  50

seq1  AGCTTTGTTCTGGGTAATAGAAGTTCTCAGTGCTAAGTGTAAAACTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTTCTGGGTAATAGAAGTTCTCAGTGCTAAGTGTAAAACTTGCA  100

seq1  AGCACCGCCCACAGTCCCGTTAAGGTATTCTGCCTGGTGAAGAGACACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCGCCCACAGTCCCGTTAAGGTATTCTGCCTGGTGAAGAGACACTA  150

seq1  GTGATTAAAATCCAAATCATCTGTCAGTATGAAATTAATCATTTCCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAAATCCAAATCATCTGTCAGTATGAAATTAATCATTTCCTGGA  200

seq1  CATGACAGTGCCACACTGACATGGCCATGCCTATCTCTGTAAGAGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGTGCCACACTGACATGGCCATGCCTATCTCTGTAAGAGCAGAG  250

seq1  GCCCAACACCAACATGAACATTTTATATGTCATTAAGTGTAAAAGTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACACCAACATGAACATTTTATATGTCATTAAGTGTAAAAGTTAAA  300

seq1  GCATTATCATTATTTAATGATCTAAGGCTAAGACTTATTGTTCATATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCATTATTTAATGATCTAAGGCTAAGACTTATTGTTCATATCCC  350

seq1  AGATTTTATAAGTCTTAATGAAAATTCATAGTGCATGCAAGTTAAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATAAGTCTTAATGAAAATTCATAGTGCATGCAAGTTAAGTTTG  400

seq1  GGTTCCACTATTTTTTTCTTATAATAAAAAGTGAAGTTTTATGATGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCACTATTTTTTTCTTATAATAAAAAGTGAAGTTTTATGATGGTTT  450

seq1  TCAGGGCAAGAAATTTTCTAAATGTATTATTTGTCCTTGTGTAATCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAAGAAATTTTCTAAATGTATTATTTGTCCTTGTGTAATCACAT  500

seq1  GTTTATAAATCAATTTAACAGCTCCCTATAGATAATCAAGTCAATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAAATCAATTTAACAGCTCCCTATAGATAATCAAGTCAATTTTAA  550

seq1  CTATTCCTTTATGAAAGTCAACCACATGAAATCTACTGTCAAAAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTTATGAAAGTCAACCACATGAAATCTACTGTCAAAAATTTAA  600

seq1  GATTGGAAATTTTAAAGCACAGCCTGTTTCTTAACATTTTTAAAACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAAATTTTAAAGCACAGCCTGTTTCTTAACATTTTTAAAACACAG  650

seq1  TTTATGCAATAAGAAAGTATTTAAATTTCCTTACTGGGAGTATTTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAATAAGAAAGTATTTAAATTTCCTTACTGGGAGTATTTTAAAT  700

seq1  CCCTAATTCAGAAAGTTAAAGTGTTGCAATCGTTTTCTCCCAAATAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTCAGAAAGTTAAAGTGTTGCAATCGTTTTCTCCCAAATAAGGG  750

seq1  GCAATTAATTA-TTGAGTAATAAATAAATTAGTAGTCACTACTAATAGGC  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAATTATTTGAGTAATAAATAAATTAGTAGTCACTACTAATAGGC  800

seq1  AATATAAATATTAACTTCCCGTCTCTTAGGATACATAAAAGAAAAGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAATATTAACTTCCCGTCTCTTAGGATACATAAAAGAAAAGGTGA  850

seq1  TTTTTCCTTCCTCTTGATAAGATACAATTAAACTATTTAGAAAAATAGAT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTCCTTCCTCTTGATAAGATACAATTAAACTATTTAG-AAAATAGAT  899

seq1  CATAGTCTAAAGTTAATTTTTTCTAATAAAAG-CTTTCTATGTGTGGAGT  948
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CATAGTCTAAAGTTAA-TTTTTCTAATAAAAGCCTTTCTATGTGTGGAGT  948

seq1  AAAGAGATACCTTTTTGTTTGTTAGTGTCTGGGAAG-CCTTCAGAAAAAG  997
      |||||||||| ||||||||||||||||||||||||| ||||||| |||||
seq2  AAAGAGATACTTTTTTGTTTGTTAGTGTCTGGGAAGCCCTTCAG-AAAAG  997

seq1  GGAATTTTAAAGAGTTATAAGGATATAGATCAGTG-ATAGGCTGCATTGA  1046
      ||| |||| ||||| ||| |||||||||||||||| ||||  ||||||||
seq2  GGACTTTT-AAGAG-TAT-AGGATATAGATCAGTGAATAGCTTGCATTGA  1044

seq1  AATCATTTCTTATGAATTT-TAAGTACAGTCTTCTCAAGTGACTGA--TT  1093
      |||||||||||||| |||| ||||| |||  | ||| |||||||||   |
seq2  AATCATTTCTTATGGATTTGTAAGTTCAGCTTCCTCCAGTGACTGACTGT  1094

seq1  AATAGG--AACAGTG  1106
      ||||||  |||||||
seq2  AATAGGGAAACAGTG  1109


seq1: chr18_39795032_39796119
seq2: B6Ng01-196G09.g_67_1159 (reverse)

seq1  GATTA-GATGGCATCTTGTTGTGAAAGGAAAGGAGGG-ACG-ACAGA-GG  46
      ||||| |||||||||||| ||||||  |||||||||| ||| ||||| ||
seq2  GATTAGGATGGCATCTTG-TGTGAA--GAAAGGAGGGTACGTACAGAGGG  47

seq1  GAGGAGAAACAGACAAGGC--AGGGGAGAAATTCATCATTGGGCTCATTT  94
      |||||||||||||||||||   ||||||||| ||||||||||||||||||
seq2  GAGGAGAAACAGACAAGGCCAGGGGGAGAAA-TCATCATTGGGCTCATTT  96

seq1  TT-CCTATCTCCACACAGCTGGGGCAATTTCCTCCAGCACAAACACTTTA  143
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATCTCCACACAGCTGGGGCAATTTCCTCCAGCACAAACACTTTA  146

seq1  TGTGTCTCCATCCGTCAGG-CCAGACATTTTCTCGCTCATGGATCCCAGC  192
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTGTCTCCATCCGTCAGGCCCAGACATTTTCTCGCTCATGGATCCCAGC  196

seq1  TGTATGTCATAGCAGGTCCAGACCCTTCCGAAATCCAAATTCCTCTTCGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCATAGCAGGTCCAGACCCTTCCGAAATCCAAATTCCTCTTCGC  246

seq1  AGTACATCAAACCATGTGCCACT-CCCTACTGACACCCACAGTCTGATGA  291
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTACATCAAACCATGTGCCACTCCCCTACTGACACCCACAGTCTGATGA  296

seq1  GCTGAATCAGACCAGAGCATCTTTGAAAACAGTCTGAACAGCATATTTCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCAGACCAGAGCATCTTTGAAAACAGTCTGAACAGCATATTTCA  346

seq1  AACTATCAGCCTAGCGCGAGTTACTTTCCGTCGACCCCACTCGCGGTCCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCAGCCTAGCGCGAGTTACTTTCCGTCGACCCCACTCGCGGTCCC  396

seq1  GTGGGCTGCTCCCTCTGGCTCTCTGACTTCCTAGCTCCGCTGGCTAGGTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGCTCCCTCTGGCTCTCTGACTTCCTAGCTCCGCTGGCTAGGTT  446

seq1  TGGTCAGAAGACCTGGGGAGCTGCTAGAGATTTTGTGCCTGCTTCCTCTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGAAGACCTGGGGAGCTGCTAGAGATTTTGTGCCTGCTTCCTCTA  496

seq1  TCTTCCCAGCACCCTCAGTCTCCATGTCCTGCTGTAAGCTCCAGCTCTTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGCACCCTCAGTCTCCATGTCCTGCTGTAAGCTCCAGCTCTTA  546

seq1  TAGGAAAGCACTCATAGCACCTTTCTCTGCCACACTGGGGATGGAATTGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGCACTCATAGCACCTTTCTCTGCCACACTGGGGATGGAATTGT  596

seq1  CTTCCTGTGTCTGCCAGTCCTTAAGCTTCAATCTCCCTTACTGTCTCACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGTCTGCCAGTCCTTAAGCTTCAATCTCCCTTACTGTCTCACA  646

seq1  AATCCTTCCTCCTTCATTACAGCCTGCCTGCGTGGACCTTGAGAGTAGCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCCTCCTTCATTACAGCCTGCCTGCGTGGACCTTGAGAGTAGCT  696

seq1  AATCTATTTCCTCTCTACTTGAAAGCAGACTGTAAAAGGCGCAGGTCTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTCCTCTCTACTTGAAAGCAGACTGTAAAAGGCGCAGGTCTGT  746

seq1  TTCCCTGAGAGGAGGCTCTCAACTCTACAATGCCACTTTGCTTTTTGGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGAGAGGAGGCTCTCAACTCTACAATGCCACTTTGCTTTTTGGAG  796

seq1  CTGAGCTTAGAGGCTTTTCATAATCAGGGGGTGGGGGTGGGGGGTGGTGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTAGAGGCTTTTCATAATCAGGGGGTGGGGGTGGGGGGTGGTGG  846

seq1  GGATCAGCGAGTTCTTTTTACACAGTTCACTTCCCATGAAACAAAGACTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGCGAGTTCTTTTTACACAGTTCACTTCCCATGAAACAAAGACTT  896

seq1  CCTGGGGAAACTTCCACCGATTGACCCACAGTGGAAGTTATGCCAATGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAACTTCCACCGATTGACCCACAGTGGAAGTTATGCCAATGCA  946

seq1  TACTCCAGGGCGGGGCTTGGTGACCTCTGGCTGAATGTTTAGTTTTAACG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAGGGCGGGGCTTGGTGACCTCTGGCTGAATGTTTAGTTTTAACG  996

seq1  TTCTTACTGCTTAAAGGAAACGCTTCCCTCGACTTCTGAGCTGAGCAGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGCTTAAAGGAAACGCTTCCCTCGACTTCTGAGCTGAGCAGGT  1046

seq1  ATGAAAAAGCACTCCGCATGCTGTTCTCGGGAGAAGGTTTTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGCACTCCGCATGCTGTTCTCGGGAGAAGGTTTTGAATTC  1093


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