BAC Information

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BAC

Clone NameB6Ng01-196G23
Chromosome18 (Build37)
Map Location 39,455,269 - 39,579,425
singlet/doubletdoublet
Overlap geneArhgap26, Nr3c1
Upstream geneRnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196G23.bB6Ng01-196G23.g
ACCGA018577GA018578
length5861,093
definitionB6Ng01-196G23.b B6Ng01-196G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,455,269 - 39,455,860)(39,578,305 - 39,579,425)
sequence
agtatgtgatattccccaaaggcttgcgtttgaaactcttacttagggag
ttcatgagactttcgaggtgtggagcatatctggatggatcactgagagc
agattttggggattatcgacacgcccatttcccctagtctgcctcaaatt
tctgatccattgagatgtgaacaagcagccctgtgctcttgctgccagag
ctgtgggtgctcccaccaacatgacttccaaactgtgatagatggcacct
cacctctcatccacactgtgatagactacacccttacctcacatctgtat
tacaataaaccgtacccttatatcataaatcaaactcctttaagtcggtt
cttgcctggtatttgccacaataattaaaaaggtagctactacatgtggt
cttaagtaataacaacacaatgaagttttaaaaaacttataagggtacaa
aaccttaaaaattataatctgtaaataatagaactgaaaaggattttctt
tttcctttgttttagacttttgtacattttccaagttggtacatgtatgt
acatgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctttttcactgctgaaagaatagcaaagtggaatgaccatttcag
aagacagtttggtagtttcctataaaggcgaacatagtctcaccatctgg
tgtagcaattgcttgatcagtatacaaaggaaatgaaaacttatgcagca
tggatatttatagccaagctgtttgtatctggctcaacttaggcgcaatg
agatatatcatccagtagacaaatcaataaactgacatatgcaaatgatg
gtattactcaacactgaaaagaaatgggctgttgtgccaataaaaaaata
ttattgaatcttaaatatatactattaaaaaaagtaatttcttaaaaaga
atctcatcaactctaagaaacagatggaggcagatgagatgacttgtgta
aaatggaagctcaacatgcccagcaagccaactttcctcagaaattttac
aggtgcttgtggtgaagataagaggaaaactctcccgtttttatgtcagt
tagaaagggggataaactgttggaggtacatgtagtatttccaaagcaaa
agcaaggcctgccctataagagaacctcatcaagaccttatctgacatgg
agcaaaggcaaataaaggattctagacccttataatagccctcctgactt
cacagggaagaaaaggggaaaatgggtttccaggaagcatttgggtgcag
taaaagtgaaatgtaatcttaagagaaaacatttcattggagccttgctt
acagttcccagagcttagcttagttcattatcgtgatggcaggcaagcat
gattctggaaagtagctgagtgctacactctgatcggcaagcagagagag
aaagagagtagcactgggcctgttgtggacttttgagacctcaaagctta
tcctacagtgtcacacagtaacaggccacactactcaaataagagcacac
tcccaatctctatctttcatagctccctccctgtactagctatgggacat
cttatcaaccacacagtgcagatacacataaacacagttcagagcctagc
agataccatacctatcttcactatgctagttccatcagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_39455269_39455860
seq2: B6Ng01-196G23.b_45_636

seq1  GAATTCAGTATGTGATATTCCCCAAAGGCTTGCGTTTGAAACTCTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGTGATATTCCCCAAAGGCTTGCGTTTGAAACTCTTACTT  50

seq1  AGGGAGTTCATGAGACTTTCGAGGTGTGGAGCATATCTGGATGGATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTCATGAGACTTTCGAGGTGTGGAGCATATCTGGATGGATCACT  100

seq1  GAGAGCAGATTTTGGGGATTATCGACACGCCCATTTCCCCTAGTCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGATTTTGGGGATTATCGACACGCCCATTTCCCCTAGTCTGCCT  150

seq1  CAAATTTCTGATCCATTGAGATGTGAACAAGCAGCCCTGTGCTCTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTGATCCATTGAGATGTGAACAAGCAGCCCTGTGCTCTTGCTG  200

seq1  CCAGAGCTGTGGGTGCTCCCACCAACATGACTTCCAAACTGTGATAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGTGGGTGCTCCCACCAACATGACTTCCAAACTGTGATAGATG  250

seq1  GCACCTCACCTCTCATCCACACTGTGATAGACTACACCCTTACCTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCACCTCTCATCCACACTGTGATAGACTACACCCTTACCTCACAT  300

seq1  CTGTATTACAATAAACCGTACCCTTATATCATAAATCAAACTCCTTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTACAATAAACCGTACCCTTATATCATAAATCAAACTCCTTTAAG  350

seq1  TCGGTTCTTGCCTGGTATTTGCCACAATAATTAAAAAGGTAGCTACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCTTGCCTGGTATTTGCCACAATAATTAAAAAGGTAGCTACTACA  400

seq1  TGTGGTCTTAAGTAATAACAACACAATGAAGTTTTAAAAAACTTATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTTAAGTAATAACAACACAATGAAGTTTTAAAAAACTTATAAGG  450

seq1  GTACAAAACCTTAAAAATTATAATCTGTAAATAATAGAACTGAAAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAACCTTAAAAATTATAATCTGTAAATAATAGAACTGAAAAGGAT  500

seq1  TTTCTTTTTCCTTTGTTTTAGACTTTTGTACATTTTCCAAGTTGGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTCCTTTGTTTTAGACTTTTGTACATTTTCCAAGTTGGTACAT  550

seq1  GTATGTACATGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGT  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACATGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGT  592

seq1: chr18_39578305_39579425
seq2: B6Ng01-196G23.g_65_1157 (reverse)

seq1  CAGAACTGATGGAATTAAGACATTTGGTGGAAGATA-GTATGGTAATCTG  49
      |||||||||||||| ||  | | |     ||||||| ||||||| |||| 
seq2  CAGAACTGATGGAACTAGCATAGT-----GAAGATAGGTATGGT-ATCT-  43

seq1  GCTAGGCTCTGGACTGTGTTTAATGTTGGTTATCTGCACTGTGGTGGTTT  99
      ||||||||||| ||||||||||    ||  |||||||||||| |||||| 
seq2  GCTAGGCTCTGAACTGTGTTTA----TGTGTATCTGCACTGT-GTGGTT-  87

seq1  GAATAAGAATGGTCCCATAGGCTTAGTTACCAGGGAGGGGAGCTATGAAA  149
        ||||||   |||||||||   ||||   |||||| |||||||||||||
seq2  -GATAAGA--TGTCCCATAG--CTAGT--ACAGGGA-GGGAGCTATGAAA  129

seq1  GGATTAGAAGGATTGGGAGGTGTGCTCTTATTTGAGTAGGTGTGGCCCTG  199
      |   ||||  |||||||| ||||||||||||||||||| |||||| ||||
seq2  G--ATAGA--GATTGGGA-GTGTGCTCTTATTTGAGTA-GTGTGG-CCTG  172

seq1  TTACTGTGTGACACTGTAGGATAAGCTTTGAGGTCTCAAAAGTCCACAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGTGACACTGTAGGATAAGCTTTGAGGTCTCAAAAGTCCACAAC  222

seq1  AGGCCCAGTGCTACTCTCTTTCTCTCTCTGCTTGCCGATCAGAGTGTAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTGCTACTCTCTTTCTCTCTCTGCTTGCCGATCAGAGTGTAGC  272

seq1  ACTCAGCTACTTTTCCAGAATCATGCTTGCCTGCCATCACGATAATGAAC  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTAC-TTTCCAGAATCATGCTTGCCTGCCATCACGATAATGAAC  321

seq1  TAAGCTAAGCTCTGGGAACTGTAAGCAAGGCTCCAATGAAATGTTTTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAAGCTCTGGGAACTGTAAGCAAGGCTCCAATGAAATGTTTTCTC  371

seq1  TTAAGATTACATTTCACTTTTACTGCACCCAAATGCTTCCTGGAAACCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTACATTTCACTTTTACTGCACCCAAATGCTTCCTGGAAACCCA  421

seq1  TTTTCCCCTTTTCTTCCCTGTGAAGTCAGGAGGGCTATTATAAGGGTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTTTTCTTCCCTGTGAAGTCAGGAGGGCTATTATAAGGGTCTA  471

seq1  GAATCCTTTATTTGCCTTTGCTCCATGTCAGATAAGGTCTTGATGAGGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTTTATTTGCCTTTGCTCCATGTCAGATAAGGTCTTGATGAGGTT  521

seq1  CTCTTATAGGGCAGGCCTTGCTTTTGCTTTGGAAATACTACATGTACCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATAGGGCAGGCCTTGCTTTTGCTTTGGAAATACTACATGTACCTC  571

seq1  CAACAGTTTATCCCCCTTTCTAACTGACATAAAAACGGGAGAGTTTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTTTATCCCCCTTTCTAACTGACATAAAAACGGGAGAGTTTTCCT  621

seq1  CTTATCTTCACCACAAGCACCTGTAAAATTTCTGAGGAAAGTTGGCTTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTCACCACAAGCACCTGTAAAATTTCTGAGGAAAGTTGGCTTGC  671

seq1  TGGGCATGTTGAGCTTCCATTTTACACAAGTCATCTCATCTGCCTCCATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGTTGAGCTTCCATTTTACACAAGTCATCTCATCTGCCTCCATC  721

seq1  TGTTTCTTAGAGTTGATGAGATTCTTTTTAAGAAATTACTTTTTTTAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAGAGTTGATGAGATTCTTTTTAAGAAATTACTTTTTTTAATA  771

seq1  GTATATATTTAAGATTCAATAATATTTTTTTATTGGCACAACAGCCCATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTTAAGATTCAATAATATTTTTTTATTGGCACAACAGCCCATT  821

seq1  TCTTTTCAGTGTTGAGTAATACCATCATTTGCATATGTCAGTTTATTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAGTGTTGAGTAATACCATCATTTGCATATGTCAGTTTATTGAT  871

seq1  TTGTCTACTGGATGATATATCTCATTGCGCCTAAGTTGAGCCAGATACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACTGGATGATATATCTCATTGCGCCTAAGTTGAGCCAGATACAA  921

seq1  ACAGCTTGGCTATAAATATCCATGCTGCATAAGTTTTCATTTCCTTTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTGGCTATAAATATCCATGCTGCATAAGTTTTCATTTCCTTTGTA  971

seq1  TACTGATCAAGCAATTGCTACACCAGATGGTGAGACTATGTTCGCCTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATCAAGCAATTGCTACACCAGATGGTGAGACTATGTTCGCCTTTA  1021

seq1  TAGGAAACTACCAAACTGTCTTCTGAAATGGTCATTCCACTTTGCTATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACTACCAAACTGTCTTCTGAAATGGTCATTCCACTTTGCTATTC  1071

seq1  TTTCAGCAGTGAAAAAGAATTC  1121
      ||||||||||||||||||||||
seq2  TTTCAGCAGTGAAAAAGAATTC  1093