BAC Information

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BAC

Clone NameB6Ng01-196J18
Chromosome18 (Build37)
Map Location 29,387,711 - 29,388,894
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J18.bB6Ng01-196J18.g
ACCGA018706GA018707
length1,1431,132
definitionB6Ng01-196J18.b B6Ng01-196J18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaaaaaccaccatattctacattttacttttcattttagtc
aaaatatttatgcttctgttgttcactttgatgtaattcaaactgttttc
aaaatgctcaccagaggagtagccctgcttaaagtttcattgaagaggaa
cttttttctaattctgtattttcattttctctatcataactcagctgtta
tcaaataattctataaatagaactttggaggccatgaatccgattttatc
cttctaatttcttactctatttttcaggcatatcagtttataaattgtta
atccattacaaagtgagtataccttaggaacagtttacacagtagcaaga
tgttaagttttgtgaggatgtgcataagagtgactcatcttctgtcacct
tctttcctcacatttaggttgcttttgtcaatggactgtcctcctgcctc
tgcctcccaagtgctgggattaaaggccaccacacccggctaaaagtgtt
caacatccttgttgttgttgttcttgttgttattttttgagacagggttt
ctctgtgtatctctggctttcctggaactcactttgtagaccaggctggt
cttgaactaagaaatcctcctgcctctgcctcccaagtgctgggactaaa
ggcgtgcgccaccaccttgtccttcttaagactctttttctgtaacttcc
attgactagactctgcttaggtttgttctctttcttttattttctttctt
ctttccttttttctctttcactctttagtactcatggctattactttctg
ggtttcctaattcattttttctctacctctatcctataagtatatttttc
aggactctgtctagaaccatttcttgtttcactctctgtgtctttactta
ttatggttccagatttctttttagtttggcatggaaattatatttattac
ttggaaagaaaaatgtccatttgaatatttatatttctcactccctacca
tgcatcgcaatgttctgattttatgttctaaatgtgccaataacatctgt
tttctttcatcatcactactactcagtcatgaagtctgctccgacatcca
attgcctgttagacctgccatacattctccagtctgcatgcat
gaattcagtaagaatgttacctattcagtaacattcaaattcacttctag
tagagacagtgaaattaattaagcattacaatttacttgaacagagctag
aaaagctcatggctagtctacatagtaattacttaggacaatagcagatt
cccacccaaacacaggaatacacaatggcttaggaaataggtgggttgta
gtctaaaagtgttagtagaagggaattccccttgtgcaggttttttcact
aggcccagaggaatagcataattatgtatttagtaaaggatccctggtgg
tgggtttaacaatagactagcattgcatcagagtattcacctggctccta
tgtttagctgatcttaattagggttgttcctattctcttaggaggccaac
tgaaccaggtcaatggcagtaacatataaaggcagacttattagaattac
atcagacttctcaccagagactatgaaagccagaagctcctggatagatg
tcatacagaccctaagagaaaacaaatgccagctcaggctactataccca
acaaaactctaaattaccatagaaggaaaagccaaatttacacaaggtcc
tttcacaaatccagcccttcaaaggataataaagggaaaactccaacaca
aggagggaaactatgcctagaaaaagcaagaaagtaatctttcaataaag
ctagaagaagatagtcacatgaacaaaatccaaattataacaatccaaaa
taaacaggaaccagcattactttttccttaatatctcttaatatcaatga
ttcaatttccccaataaaagacatagactaacagactggttatgtaaaca
tgacccaacattttgctgcatacaggaaactcattttaatgaaaaagaca
gacactacctcagaataaaagctggaaaacaatttcaagcaaatgttcaa
agaacagcaggagtagccattctaatatcaataaaatgatctcaactaag
tatcaaaaaaaccaaacaaaacaacagacagaagacatcatactcatcag
gtacctacagatgatctcattcgattatatggctcatcagcatccactta
gactgaagctagcacattgactccgaacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29387711_29388894
seq2: B6Ng01-196J18.b_46_1188

seq1  GAATTCATTAAAAAACCACCATATTCTACATTTTACTTTTCATTTTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAAACCACCATATTCTACATTTTACTTTTCATTTTAGTC  50

seq1  AAAATATTTATGCTTCTGTTGTTCACTTTGATGTAATTCAAACTGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTATGCTTCTGTTGTTCACTTTGATGTAATTCAAACTGTTTTC  100

seq1  AAAATGCTCACCAGAGGAGTAGCCCTGCTTAAAGTTTCATTGAAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTCACCAGAGGAGTAGCCCTGCTTAAAGTTTCATTGAAGAGGAA  150

seq1  CTTTTTTCTAATTCTGTATTTTCATTTTCTCTATCATAACTCAGCTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTAATTCTGTATTTTCATTTTCTCTATCATAACTCAGCTGTTA  200

seq1  TCAAATAATTCTATAAATAGAACTTTGGAGGCCATGAATCCGATTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAATTCTATAAATAGAACTTTGGAGGCCATGAATCCGATTTTATC  250

seq1  CTTCTAATTTCTTACTCTATTTTTCAGGCATATCAGTTTATAAATTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATTTCTTACTCTATTTTTCAGGCATATCAGTTTATAAATTGTTA  300

seq1  ATCCATTACAAAGTGAGTATACCTTAGGAACAGTTTACACAGTAGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTACAAAGTGAGTATACCTTAGGAACAGTTTACACAGTAGCAAGA  350

seq1  TGTTAAGTTTTGTGAGGATGTGCATAAGAGTGACTCATCTTCTGTCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGTTTTGTGAGGATGTGCATAAGAGTGACTCATCTTCTGTCACCT  400

seq1  TCTTTCCTCACATTTAGGTTGCTTTTGTCAATGGACTGTCCTCCTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCACATTTAGGTTGCTTTTGTCAATGGACTGTCCTCCTGCCTC  450

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGCCACCACACCCGGCTAAAAGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTGCTGGGATTAAAGGCCACCACACCCGGCTAAAAGTGTT  500

seq1  CAACATCCTTGTTGTTGTTGTTCTTGTTGTTATTTTTTGAGACAGGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTTGTTGTTGTTGTTCTTGTTGTTATTTTTTGAGACAGGGTTT  550

seq1  CTCTGTGTATCTCTGGCTTTCCTGGAACTCACTTTGTAGACCAGGCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTATCTCTGGCTTTCCTGGAACTCACTTTGTAGACCAGGCTGGT  600

seq1  CTTGAACTAAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTAAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAA  650

seq1  GGCGTGCGCCACCACCTTGTCCTTCTTAAGACTCTTTTTCTGTAACTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCGCCACCACCTTGTCCTTCTTAAGACTCTTTTTCTGTAACTTCC  700

seq1  ATTGACTAGACTCTGCTTAGGTTTGTTCTCTTTCTTTTATTTTCTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAGACTCTGCTTAGGTTTGTTCTCTTTCTTTTATTTTCTTTCTT  750

seq1  CTTTCCTTTTTTCTCTTTCACTCTTTAGTACTCATGGCTATTACTTTCT-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTCCTTTTTTCTCTTTCACTCTTTAGTACTCATGGCTATTACTTTCTG  800

seq1  GGTTTCCTAATTCATTTTTTCTCTACCTCTATCCTATAAGGTATATTTTT  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTTTCCTAATTCATTTTTTCTCTACCTCTATCCTATAA-GTATATTTTT  849

seq1  CAGGACTCTGTCTAGAACCATTTCTTGTTTCACTCTCTGTTGTTCTTTAC  899
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  CAGGACTCTGTCTAGAACCATTTCTTGTTTCACTCTCTGT--GTCTTTAC  897

seq1  TTATTATGGTTCCAGATTTC-TTTTAGTTTGGCAATGGAAAATTATATTT  948
      |||||||||||||||||||| |||||||||||| |||| |||||||||||
seq2  TTATTATGGTTCCAGATTTCTTTTTAGTTTGGC-ATGG-AAATTATATTT  945

seq1  AATTACTTGGAAAAGAAAAAAATTGTCCATTTTGAAATATTTATATTTCT  998
       ||||||||| |||||||||   |||||||||   |||||||||||||||
seq2  -ATTACTTGG-AAAGAAAAA---TGTCCATTT--GAATATTTATATTTCT  988

seq1  CACCTCCCCTACCCATTGCATCGCAAATGTTCTGAATTTTATGTTCTAAA  1048
      |||   |||||||   |||||||| ||||||||| ||||||||||||  |
seq2  CAC--TCCCTACC--ATGCATCGC-AATGTTCTG-ATTTTATGTTCT--A  1030

seq1  AATGTGCAAATTAACCATCTTGTTTTTCTCTTCATCATCACTAACTAACC  1098
      ||||||| |||  | |||||   |||||| |||||||||||| ||||  |
seq2  AATGTGCCAAT--AACATCT--GTTTTCT-TTCATCATCACT-ACTA--C  1072

seq1  TCAGGTCATTGAAGTCTGTTCCCCAAACAATTTCAGTGGCCTGGTTAGCA  1148
      ||| |||| ||||||||| |||    |||  | || | |||| ||||| |
seq2  TCA-GTCA-TGAAGTCTGCTCC---GACA--TCCAATTGCCT-GTTAG-A  1113

seq1  CCTGCCCATCACCACTTCTACAGTCTGCAAATGCAT  1184
      ||||||   ||    |||| ||||||||  ||||||
seq2  CCTGCCATACA----TTCTCCAGTCTGC--ATGCAT  1143