BAC Information

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BAC

Clone NameB6Ng01-196K02
Chromosome18 (Build37)
Map Location 18,444,875 - 18,662,325
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196K02.bB6Ng01-196K02.g
ACCGA018722GA018723
length1,0491,119
definitionB6Ng01-196K02.b B6Ng01-196K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,444,875 - 18,445,897)(18,661,213 - 18,662,325)
sequence
gaattccatcactaaggagaattcagaggcaagacaaaagaaattgaaat
taagggtatttgttgtggaagtattcaaaaagcagtaaaaaagacaatga
gtgttaggaccagggagatggtttaatgtgtaggagggcttgatatgcat
tcctgaagacctaaccctgaattcccagtgtcaacttaaaaatctgagca
tacccctttcccagtaacagtcccagaacagaggtagagtcacgagaatt
atcgaggcttgaggatgtctttcttttcgggttaagtgtaaaactttctc
ttaaaacattatgactaggagtaatggagcaagagattagacatactgct
cagagagatacaccatatgtatacacacacacacacacacacacacacac
acacacaccacacacacacacacacacacacaggaacacacagatgcaca
cattcatgcacctcatgcacatatacacactcatacaagtatgcatgcat
ggacacacacacacataggcacagatgcatacatgatattgtgagggaaa
agtgaatgaataagaaggattggtagggaagaaaaggaatggggtaggtt
gataaaatatgtttatatgtccaggccttgctcaagtaatgaacatattt
aaaaatttaaaaaatccaagacatcatagtgaaaaaataaaatatcatga
gaagtaatggaaatctggatcaaagcagcagtgataactacaaaaaggtc
ccaaatttttacaaaagtaagtaatagatatattagtaggatttcaattt
actcaattggtgagatatctttggtagccctaccttcaggatattagaaa
taatattttctgtacacataattttaaatgaaatataactaatcaccctt
tatctgcaccttctttcttacatggattcaacctatcacatattggaaaa
taatcagtgaacatggagcttcattcttttcgtggaatatttgcaggagg
tccctgtgtcttattggcttttttccttaatgaatgttatcataaaaaa

gaattcttataaaatcatcattaagaattaagaaataatttatatgtctg
tatagcatcactacaagacaatacatctttattggtctgcagaaaatcta
accaattgggtgggctagtgcccagagattgttagattaatttagtaatg
acaggaaagacatatcaatagcaagaatcagttcttgagatttttccctc
aggccttgtttccaaacggctccttcatcccagttccagaatgaatcata
tctggaaaagtgcctgttactctttagtctctactagatggctcctgaca
gtctgcttgtattctaaagagagagagaaagaaagcctatggctgtattg
taggaagatgggaagattctgtgaggatttgggtaaagataaactgtata
tgaatatactgtaggaagatatattttaaactaaaaacaaatgaaaagaa
acaatatcttataaaaagccagtctctcatctttagcattataagtcaca
attaatgacatcacatcccctattttacagtaaatatatctcaggagagt
acagatcactgtatatataaatatatcacgcaacctgaaatattttcatc
tggtatctctcatatgtttgctaagaagcttaatgtatatagaattttat
atcaataggttacatccatttttgggctccaaaaataaaaaactaaatag
aagagaaatttatataggaaacctaatatgtgtttgtgtcctcagagagg
aagtgctacataatgaatactgtagattttattttgaatcatattagaaa
ggccaattgataattgagcacaagaacttatttcgcctatgccaccaatg
tcttcaggatttcaacaaataatgttaattgaaaaaggacttttatctct
taagcattttaaagaagcaattgagcatgaaatttcctagtgtaattcta
gtaacaggtaaagtaaatttgcctgtatgcttaagatgcctgagagctat
agatgggtctttttggaatgtctaatttcccactcttttttcaccgccag
attgatttccagttactgaccagttgcagtaccaccaccatgtttaactg
ttatcaggttttggtctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18444875_18445897
seq2: B6Ng01-196K02.b_45_1093

seq1  GAATTCCATCACTAAGGAGAATTCAGAGGCAAGACAAAAGAAATTGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCACTAAGGAGAATTCAGAGGCAAGACAAAAGAAATTGAAAT  50

seq1  TAAGGGTATTTGTTGTGGAAGTATTCAAAAAGCAGTAAAAAAGACAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTATTTGTTGTGGAAGTATTCAAAAAGCAGTAAAAAAGACAATGA  100

seq1  GTGTTAGGACCAGGGAGATGGTTTAATGTGTAGGAGGGCTTGATATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGACCAGGGAGATGGTTTAATGTGTAGGAGGGCTTGATATGCAT  150

seq1  TCCTGAAGACCTAACCCTGAATTCCCAGTGTCAACTTAAAAATCTGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGACCTAACCCTGAATTCCCAGTGTCAACTTAAAAATCTGAGCA  200

seq1  TACCCCTTTCCCAGTAACAGTCCCAGAACAGAGGTAGAGTCACGAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTTCCCAGTAACAGTCCCAGAACAGAGGTAGAGTCACGAGAATT  250

seq1  ATCGAGGCTTGAGGATGTCTTTCTTTTCGGGTTAAGTGTAAAACTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAGGCTTGAGGATGTCTTTCTTTTCGGGTTAAGTGTAAAACTTTCTC  300

seq1  TTAAAACATTATGACTAGGAGTAATGGAGCAAGAGATTAGACATACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATTATGACTAGGAGTAATGGAGCAAGAGATTAGACATACTGCT  350

seq1  CAGAGAGATACACCATATGTATACACACACACACACACACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGATACACCATATGTATACACACACACACACACACACACACACAC  400

seq1  ACACACACCACACACACACACACACACACACAGGAACACACAGATGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCACACACACACACACACACACACAGGAACACACAGATGCACA  450

seq1  CATTCATGCACCTCATGCACATATACACACTCATACAAGTATGCATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGCACCTCATGCACATATACACACTCATACAAGTATGCATGCAT  500

seq1  GGACACACACACACATAGGCACAGATGCATACATGATATTGTGAGGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACACACACATAGGCACAGATGCATACATGATATTGTGAGGGAAA  550

seq1  AGTGAATGAATAAGAAGGATTGGTAGGGAAGAAAAGGAATGGGGTAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGAATAAGAAGGATTGGTAGGGAAGAAAAGGAATGGGGTAGGTT  600

seq1  GATAAAATATG-TTATATGTCCAGGCCTTGCTCAAGTAATGAACATA-TT  648
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  GATAAAATATGTTTATATGTCCAGGCCTTGCTCAAGTAATGAACATATTT  650

seq1  AAAAATTTAAAAAATCCAAGACATCATAGTGAAAAAAT-AAATATCATGA  697
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAATTTAAAAAATCCAAGACATCATAGTGAAAAAATAAAATATCATGA  700

seq1  GAAGTAATGGAAATCTGGATCAAAGCAGCAGTGATAACTACAAAAAGGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATGGAAATCTGGATCAAAGCAGCAGTGATAACTACAAAAAGGTC  750

seq1  CCAAA-TTTTACAAAAGT-AGTAATAGATATA-TAGTAGGATTTCAATTT  794
      ||||| |||||||||||| ||||||||||||| |||||||||||||||||
seq2  CCAAATTTTTACAAAAGTAAGTAATAGATATATTAGTAGGATTTCAATTT  800

seq1  ACTCAATTGGGGAGATATC-TTGGTAG-CCTA-CTTCAGGATA-TAGAAA  840
      |||||||||| |||||||| ||||||| |||| |||||||||| ||||||
seq2  ACTCAATTGGTGAGATATCTTTGGTAGCCCTACCTTCAGGATATTAGAAA  850

seq1  TAATATTTTCTGTACACATAATTTTAAATGTAAGTAT-ACT-ATCACC--  886
      |||||||||||||||||||||||||||||| || ||| ||| ||||||  
seq2  TAATATTTTCTGTACACATAATTTTAAATG-AAATATAACTAATCACCCT  899

seq1  TTATCTGCACC-TCCTTCTTACATGGATTCAACCTATCACATATT-GAAA  934
      ||||||||||| || |||||||||||||||||||||||||||||| ||||
seq2  TTATCTGCACCTTCTTTCTTACATGGATTCAACCTATCACATATTGGAAA  949

seq1  ATAATCAGTGAACATGGAGCTTCAT--CTTTCGT-GAATATTTGCAGG-G  980
      |||||||||||||||||||||||||   |||||| ||||||||||||| |
seq2  ATAATCAGTGAACATGGAGCTTCATTCTTTTCGTGGAATATTTGCAGGAG  999

seq1  TTCCC--TGTCTTAT--GCTTTTTT-CTTAATG-ATG-TATCATAAAAAA  1023
       ||||  ||||||||  |||||||| ||||||| ||| ||||||||||||
seq2  GTCCCTGTGTCTTATTGGCTTTTTTCCTTAATGAATGTTATCATAAAAAA  1049


seq1: chr18_18661213_18662325
seq2: B6Ng01-196K02.g_65_1183 (reverse)

seq1  AGAGACCAAAA-CTG--TACACTTAAACATTGTTGGTGGTACTGCAACTG  47
      ||||||||||| |||   ||| ||||||| || |||||||||||||||||
seq2  AGAGACCAAAACCTGATAACAGTTAAACA-TGGTGGTGGTACTGCAACTG  49

seq1  GTGCAGTCACTGTGAAAATCAATCTGGCGGGTTGAAAAGAGT-GGAAATA  96
      || |||| ||  || |||||||||||||||    |||||||| |||||| 
seq2  GT-CAGTAAC--TGGAAATCAATCTGGCGGTGAAAAAAGAGTGGGAAATT  96

seq1  GAACAT--CCAAAAGACCCATCTATAGCTCTCAGGCATCTTAAGCATACA  144
        ||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCCAAAAAGACCCATCTATAGCTCTCAGGCATCTTAAGCATACA  146

seq1  -GCCAATTTACTTTACCTGTTACTAGAATTACACTAGGAAA-TTCATGCT  192
       || ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAAATTTACTTTACCTGTTACTAGAATTACACTAGGAAATTTCATGCT  196

seq1  C-ATTGCTTCTTTAAAATGCTAAGGAG-TAAAAGTCCTTTTTCAATTAAC  240
      | ||||||||||||||||||| | ||| ||||||||||||||||||||||
seq2  CAATTGCTTCTTTAAAATGCTTAAGAGATAAAAGTCCTTTTTCAATTAAC  246

seq1  ATTATTTGTTGAAATCCTGAAGACATTGGTGGCATAGGCGAAATAAGTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTTGAAATCCTGAAGACATTGGTGGCATAGGCGAAATAAGTTC  296

seq1  TTGTGCTCAATTATCAATTGGCCCTTCTAATATGATTCAAAATAAAATCT  340
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTGCTCAATTATCAATTGGCCTTTCTAATATGATTCAAAATAAAATCT  346

seq1  ACAGTATTCATTATGTAGCACTTCCTCTCTGAGGACACAAACACATATTA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTCATTATGTAGCACTTCCTCTCTGAGGACACAAACACATATTA  396

seq1  GGTTTCCTATATAAATTTCTCTTCTATTTAGTTTTTTATTTTTGGAGCCC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTATATAAATTTCTCTTCTATTTAGTTTTTTATTTTTGGAGCCC  446

seq1  AAAAATGGATGTAACCTATTGATATAAAATTCTATATACATTAAGCTTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGATGTAACCTATTGATATAAAATTCTATATACATTAAGCTTCT  496

seq1  TAGCAAACATATGAGAGATACCAGATGAAAATATTTCAGGTTGCGTGATA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACATATGAGAGATACCAGATGAAAATATTTCAGGTTGCGTGATA  546

seq1  TATTTATATATACAGTGATCTGTACTCTCCTGAGATATATTTACTGTAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATATACAGTGATCTGTACTCTCCTGAGATATATTTACTGTAAA  596

seq1  ATAGGGGATGTGATGTCATTAATTGTGACTTATAATGCTAAAGATGAGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGATGTGATGTCATTAATTGTGACTTATAATGCTAAAGATGAGAG  646

seq1  ACTGGCTTTTTATAAGATATTGTTTCTTTTCATTTGTTTTTAGTTTAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTTTTATAAGATATTGTTTCTTTTCATTTGTTTTTAGTTTAAAA  696

seq1  TATATCTTCCTACAGTATATTCATATACAGTTTATCTTTACCCAAATCCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTCCTACAGTATATTCATATACAGTTTATCTTTACCCAAATCCT  746

seq1  CACAGAATCTTCCCATCTTCCTACAATACAGCCATAGGCTTTCTTTCTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCTTCCCATCTTCCTACAATACAGCCATAGGCTTTCTTTCTCT  796

seq1  CTCTCTTTAGAATACAAGCAGACTGTCAGGAGCCATCTAGTAGAGACTAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTAGAATACAAGCAGACTGTCAGGAGCCATCTAGTAGAGACTAA  846

seq1  AGAGTAACAGGCACTTTTCCAGATATGATTCATTCTGGAACTGGGATGAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACAGGCACTTTTCCAGATATGATTCATTCTGGAACTGGGATGAA  896

seq1  GGAGCCGTTTGGAAACAAGGCCTGAGGGAAAAATCTCAAGAACTGATTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGTTTGGAAACAAGGCCTGAGGGAAAAATCTCAAGAACTGATTCT  946

seq1  TGCTATTGATATGTCTTTCCTGTCATTACTAAATTAATCTAACAATCTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGATATGTCTTTCCTGTCATTACTAAATTAATCTAACAATCTCT  996

seq1  GGGCACTAGCCCACCCAATTGGTTAGATTTTCTGCAGACCAATAAAGATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTAGCCCACCCAATTGGTTAGATTTTCTGCAGACCAATAAAGATG  1046

seq1  TATTGTCTTGTAGTGATGCTATACAGACATATAAATTATTTCTTAATTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTGTAGTGATGCTATACAGACATATAAATTATTTCTTAATTCT  1096

seq1  TAATGATGATTTTATAAGAATTC  1113
      |||||||||||||||||||||||
seq2  TAATGATGATTTTATAAGAATTC  1119


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