BAC Information

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BAC

Clone NameB6Ng01-196P18
Chromosome18 (Build37)
Map Location 36,721,875 - 36,722,964
singlet/doubletsinglet
Overlap genenone
Upstream geneMatr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9
Downstream geneLOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196P18.bB6Ng01-196P18.g
ACCGA018978GA018979
length1,2041,099
definitionB6Ng01-196P18.b B6Ng01-196P18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggaaactgctgctaacccattgtcctttctctggccaggtggc
agggcagcttttgaggcccggaattgcccagttcttggctcctcattctc
cagatcattctctcttcattcacgtgtctagctctctctgcaacatgtct
ctgtacaactatcccagtaaaaatgcctctgttgcctctgctgctgccac
agccgcctcctcccccttctcttcttcctcttcttcctccccccttcctc
cctccccttgtccccccgaaatcccccgcactgtccctaaagtagcttcc
ctttcctctctcttctctgagagttgggcagatcctattctgtcaagcct
ttctctaatttgccacttgaagtcactttcaaacatggctgattccttct
acaaactaactttctatgtggtcaaatatcttgcagcagaatccctttta
gaaaggggaaaggggtagtaactaaaaatgaatctttttatttaatagac
atttatttatttttttatgtgtatgagtgttttgactgtgcactgtttat
gtacccagtgcctgtggaggccagaggacagtatcagagtccctggaacc
agagttaaagacaggtttcgtttatttcttaccagtccctggtcactcct
aaaaatagccaatctctagctagttttgtgtcaacttgccacaagctaga
gtcatttttggaagagggaacctcaattgaataaatacctgagctagaga
gatggctcagaggttaagagcactaactgctcttccagaggtcctgagtt
caaatcccagcatccacatagtggctcacaaccatctgtaatgagatctg
ataccctcttctggtatatctgaagacagctacagtgtactaacatataa
tgaataataaatctttttttaaaaaaaaaagaaagaaagaagggaagacc
cacacagactggccctggtggacaagccctgtgtgcatttcccttgactg
actagtgtgaagggcccagctcactatgggtggtgcttatccggggctgg
tgccttagatgctataaaacaacaggcctgagctagccaatgaagagcag
ccagtaagccagcagtctttcggcttctaacgtggcagttccgtccttga
acttccttgcctggattccctctcaagtaatcgaactggtaggtgtaacc
gtga
gaattcctgtgtaccaatgatcctggcttgtgcatttgagaggactaatg
agaaattattgcagagtacagttacagcactattttcctaggtctgaaca
ggagatttttttggattcaacattttacttaggaaaaaagctgtgtatgt
tatccatccgtttttttttttttatttttatttatttatttattttattt
atttccctcttaagaaaataaattctaggccaagatgagagaagaatttt
atttggatagtcagatgttggggtaatctgtagctccctcggttctgagt
ttgtggatggcttttatcctttcagtgaaatgatgagagctgaactcaga
acacatggatgtttggctaggaaagaaagtgctggctaactttagattct
taagatttattttctttgtacttataagggagaatctgaaaaaactggct
ttattctaaatgttatgagaagatagtcttcttgactttggggggcactt
tgacataattggcatgaatgagattagaggttactggtttgcttttatat
gagtagtgtttagatttcttcacagataaaagtgtgagtgaacttccaaa
gtcaaattgtcttggtgtttgtctctgtcacatacattgtattaaagctc
tgggtacaatctatacattttcatactgttttgagacaaggtcttaatgt
gtagccctgactggcctggaactggctttgtaaacaagattggccttgaa
ctttagagatcagcctgtttctgccttgcaattactaggattgactgcgt
gtgccactatgcctagattcatactttaaacaaaatttttggttttatat
gtgttttgatgtttttgcctaaatatggtgcgtactgcttcagtgtctgg
ttgctcatggaatccgaagagggttgtcatgtcctccttgaaactgaggt
tacagtttactcacatggagctaccaatgttgagtggcttgagaattgat
ttagggttctttggaagaagcagtcagtgagtgactcttaaacctcgagc
atctcaactagacacctattctaatccttctgttttacttatacattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36721875_36722964
seq2: B6Ng01-196P18.g_65_1163

seq1  GAATTCCTGTGTACCAATGATCCTGGCTTGTGCATTTGAGAGGACTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTACCAATGATCCTGGCTTGTGCATTTGAGAGGACTAATG  50

seq1  AGAAATTATTGCAGAGTACAGTTACAGCACTATTTTCCTAGGTCTGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTGCAGAGTACAGTTACAGCACTATTTTCCTAGGTCTGAACA  100

seq1  GGAGATTTTTTTGGATTCAACATTTTACTTAGGAAAAAAGCTGTGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTTTTGGATTCAACATTTTACTTAGGAAAAAAGCTGTGTATGT  150

seq1  TATCCATCCGTTTTTTTTTTTTTATTTTTATTTATTTATTTATTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATCCGTTTTTTTTTTTTTATTTTTATTTATTTATTTATTTTATTT  200

seq1  ATTTCCCTCTTAAGAAAATAAATTCTAGGCCAAGATGAGAGAAGAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTCTTAAGAAAATAAATTCTAGGCCAAGATGAGAGAAGAATTTT  250

seq1  ATTTGGATAGTCAGATGTTGGGGTAATCTGTAGCTCCCTCGGTTCTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATAGTCAGATGTTGGGGTAATCTGTAGCTCCCTCGGTTCTGAGT  300

seq1  TTGTGGATGGCTTTTATCCTTTCAGTGAAATGATGAGAGCTGAACTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATGGCTTTTATCCTTTCAGTGAAATGATGAGAGCTGAACTCAGA  350

seq1  ACACATGGATGTTTGGCTAGGAAAGAAAGTGCTGGCTAACTTTAGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGATGTTTGGCTAGGAAAGAAAGTGCTGGCTAACTTTAGATTCT  400

seq1  TAAGATTTATTTTCTTTGTACTTATAAGGGAGAATCTGAAAAAACTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTATTTTCTTTGTACTTATAAGGGAGAATCTGAAAAAACTGGCT  450

seq1  TTATTCTAAATGTTATGAGAAGATAGTCTTCTTGACTTTGGGGGGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAAATGTTATGAGAAGATAGTCTTCTTGACTTTGGGGGGCACTT  500

seq1  TGACATAATTGGCATGAATGAGATTAGAGGTTACTGGTTTGCTTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAATTGGCATGAATGAGATTAGAGGTTACTGGTTTGCTTTTATAT  550

seq1  GAGTAGTGTTTAGATTTCTTCACAGATAAAAGTGTGAGTGAACTTCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTGTTTAGATTTCTTCACAGATAAAAGTGTGAGTGAACTTCCAAA  600

seq1  GTCAAATTGTCTTGGTGTTTGTCTCTGTCACATACATTGTATTAAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTGTCTTGGTGTTTGTCTCTGTCACATACATTGTATTAAAGCTC  650

seq1  TGGGTACAATCTATACATTTTCATACTGTTTTGAGACAAGGTCTTAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACAATCTATACATTTTCATACTGTTTTGAGACAAGGTCTTAATGT  700

seq1  GTAGCCCTGACTGGCCTGGAACTGGCTTTGTAAACAAGATTGGCCTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTGACTGGCCTGGAACTGGCTTTGTAAACAAGATTGGCCTTGAA  750

seq1  C-TTAGAGATCAGCCTGTTTCTGCCTTGCAATTACTAGGATTGACTGCGT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGATCAGCCTGTTTCTGCCTTGCAATTACTAGGATTGACTGCGT  800

seq1  GTGCCACTATGCCTAGATTCATACTTTAAACAAAATTTTTGGTTTTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTATGCCTAGATTCATACTTTAAACAAAATTTTTGGTTTTATAT  850

seq1  GTGTTTTGATGTTTTTGCCTAAATAT-GTGCGTACTGCTTCAGTGCCTGG  898
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GTGTTTTGATGTTTTTGCCTAAATATGGTGCGTACTGCTTCAGTGTCTGG  900

seq1  -TGCCCATGGAATCCCGAAGAGGG-TGTCATGTC--CCCTGAAACTGGGG  944
       ||| |||||||| |||||||||| |||||||||  || |||||||| ||
seq2  TTGCTCATGGAAT-CCGAAGAGGGTTGTCATGTCCTCCTTGAAACTGAGG  949

seq1  TTACAG-TTACTCACATGGAGCCACC-ATG-TGAGTG--CTGAGAATTGA  989
      |||||| ||||||||||||||| ||| ||| ||||||   ||||||||||
seq2  TTACAGTTTACTCACATGGAGCTACCAATGTTGAGTGGCTTGAGAATTGA  999

seq1  ATTAGGGTTCTTTGGAAG-AGCAGTCAGTGAGTG-CTCTTAACCCTCAGC  1037
       ||||||||||||||||| ||||||||||||||| ||||||| ||||   
seq2  TTTAGGGTTCTTTGGAAGAAGCAGTCAGTGAGTGACTCTTAAACCTCGAG  1049

seq1  CATCTCCAACCTCAGAACACCTATTCTTATTCTTCTG-TTTACTTATACA  1086
      ||||| ||||   || ||||||||||| || |||||| ||||||||||||
seq2  CATCT-CAAC--TAG-ACACCTATTCTAATCCTTCTGTTTTACTTATACA  1095

seq1  TTCT  1090
      ||||
seq2  TTCT  1099