BAC Information

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BAC

Clone NameB6Ng01-197N21
Chromosome18 (Build37)
Map Location 58,370,988 - 58,507,158
singlet/doubletdoublet
Overlap genenone
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N21.bB6Ng01-197N21.g
ACCGA019617GA019618
length1,1621,117
definitionB6Ng01-197N21.b B6Ng01-197N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,505,974 - 58,507,158)(58,370,988 - 58,372,085)
sequence
gaattctctgttcttgatcgatgggtccttgccattgccagaagccaaaa
acattcaaactcagaaaagtgaagttttgaagccttttcatacctttatg
gactgtgggaatggtaagctaatgcattctctgagacaccatatgtgtag
caatgaaaaagaaccttgtgaacacgtcaataatgtatcatttcatttgc
actgaattggagaaattaccccccattgtaagcattggctaattattgac
aacacatcctaaggaagagcaaagtagtctcctttgggggagactcagta
agtacaccatggatgacctttaaacataaataaagagcaaacatacaaac
actatccagactcttgcaatgccgtctaccctgtgcttttatttcagcca
attacctgaacgctctttgagttgtgtcttgaatgagtatgccagtcttg
aatgaccaggtcattcaggatattctgttcttacaatataactggtgcca
gcaaaataatttactccagtctctgggaaaatggtgatttggtccggaag
attcttgtggaggttcttaataggatggacatgtgtgctaagctttattt
actgtaagtgcttagtaacctcagcaacaaaattgctaagaccttgttct
tttattttcccagtttcttctttctccttttcgtggtgccagcaacaaaa
gggcatgcaactagatcccttctggtggcggatggtttaccttggaggct
ccggaatgacacattccgcaattgctgccatttccggccactctgttccc
ttttgttctcttaagtggagagtgtaggttcccaaaatatatatttaaat
aacgttcctttaagttaacagatgtgaaagaagtagacaaatcaaaatat
gcatggacccatgttttcttaaggagggatttgggatttatacctcagaa
atggagccatctcaaacttcccaagttttactttcctgtgccgctctata
agtacaaccagtttaccttttgaaaatatcagtctttactactggtagcc
tatcacataatgtcataattttttttattgaccagtctgtgtgtgagtag
agaacttggaacaatgagctagtagaccacaaccctctggtccagagctg
agaatctgatgt

gaattcatatcatggggatggagactaggccacgcgctggcgccacagtc
tcaaggagttcttagaggagatgtgttcaggtgtgacccctggcagaact
ctgcctgggtccttgaacaggatggtttgttgggggtcaggggtgggggc
ggtcacttgtcaacatagctggtaaatgggactgggcgtggctttagttt
ttgtcttggaccccttctgattaatgattaaacctgacaaatggtgcaat
gaatggtttgtaaatttagggcgtctcttggccagattctggggtctttt
gtgaccttgctttcaggaggtctctatgaatcccttgccatctcttagtg
gaagtaatgggccaggggaccacacacctctgaagactgggaatgagcag
gcacggtttaggaaatggttcttgagagcagtgtccggctcattccagcc
tagagagcttgactttaaaagaaatgagtgtgcatgcttgtttttcctag
cccggattgtccagatgtgctatttgacagccaaaaaattcttggagagt
tggcacacctccctcctttatttccccagtgtagttgtagttggcagaca
aagactctcaggtagtaagtagcccttctaacagcatccttggagcagaa
gaaaaagtaggagtcacctcagtttaggggaggggaatctgacagcagta
gaggtatttcccccctttccccaagttttgagtggaacaaataattaaag
aagtaaataagtgacctcatgagttaaagcagaattttaatcttacctgc
gatttctcatctatacttaaatgaatttcatttctgcttaattacattaa
gctcaaattgttctaaaatcgcatatgtctgtattctcacattccctaaa
taccgcttttaggaacctgcaaaaaaaaatacttggaaaaaaatagaaaa
tgagggatccattaaacctatttcattgcagccactgtgtgatagccaag
gaactaagttttgtaaacaatttccctcaataaagaactggctgccacca
tgccttcaattcgttctatggaaatatctacgcaaatgaaaaaaaaaaaa
taaattaggagccactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58505974_58507158
seq2: B6Ng01-197N21.b_48_1209 (reverse)

seq1  ACATCAGTATTCTCAGCCTTTCCTCGTACCAGGGATGTTGTTTGTTGTTT  50
      ||||||| |||||||||  |     | ||||| |     | |||| |  |
seq2  ACATCAG-ATTCTCAGCTCT-----GGACCAGAG-----GGTTGTGG--T  37

seq1  CTACCTAGCTCCATTG-TCCAAAGTCTCTACTCACACACAGACTGTGTCA  99
      ||| |||||| ||||| |||||  ||||||||||||||||||||| ||| 
seq2  CTA-CTAGCT-CATTGTTCCAAGTTCTCTACTCACACACAGACTG-GTC-  83

seq1  AATAAAAAAAAATTTAATTGACA-TATGTGATA-GCTACCAGTTAGTAAA  147
      |||||||||||  |||  ||||| ||||||||| |||||||| |||||||
seq2  AATAAAAAAAA--TTA--TGACATTATGTGATAGGCTACCAG-TAGTAAA  128

seq1  GACCTGATATTTTTCAAAGGGTAAACTGGTTTGTACTTATAGAGCGGCCA  197
      || |||||| |||||||| |||||||||| ||||||||||||||||| ||
seq2  GA-CTGATA-TTTTCAAAAGGTAAACTGG-TTGTACTTATAGAGCGG-CA  174

seq1  CAGGAAAGTAAAACTTGGGAAGTTTGAGATGGCTCCATTTCCTGAGGTAT  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGAAAGTAAAACTTGGGAAGTTTGAGATGGCTCCATTT-CTGAGGTAT  223

seq1  AAAT-CCAAATCCCTCCTTAAGAAAACATGGGTCCATGCATATTTTGATT  296
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAAATCCCTCCTTAAGAAAACATGGGTCCATGCATATTTTGATT  273

seq1  TGTCTACTTCTTTCACATCTGTTAACTTAAAGGAACGTTATTTAAATATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTTCTTTCACATCTGTTAACTTAAAGGAACGTTATTTAAATATA  323

seq1  TATTTTGGGAACCTACACTCTCCACTTAAGAGAACAAAAGGGAACAGAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGGAACCTACACTCTCCACTTAAGAGAACAAAAGGGAACAGAGT  373

seq1  GGCCGGAAATGGCAGCAATTGCGGAATGTGTCATTCCGGAGCCTCCAAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGAAATGGCAGCAATTGCGGAATGTGTCATTCCGGAGCCTCCAAGG  423

seq1  TAAACCATCCGCCACCAGAAGGGATCTAGTTGCATGCCCTTTTGTTGCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCCGCCACCAGAAGGGATCTAGTTGCATGCCCTTTTGTTGCTG  473

seq1  GCACCACGAAAAGGAGAAAGAAGAAACTGGGAAAATAAAAGAACAAGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACGAAAAGGAGAAAGAAGAAACTGGGAAAATAAAAGAACAAGGTC  523

seq1  TTAGCAATTTTGTTGCTGAGGTTACTAAGCACTTACAGTAAATAAAGCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATTTTGTTGCTGAGGTTACTAAGCACTTACAGTAAATAAAGCTT  573

seq1  AGCACACATGTCCATCCTATTAAGAACCTCCACAAGAATCTTCCGGACCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATGTCCATCCTATTAAGAACCTCCACAAGAATCTTCCGGACCA  623

seq1  AATCACCATTTTCCCAGAGACTGGAGTAAATTATTTTGCTGGCACCAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCATTTTCCCAGAGACTGGAGTAAATTATTTTGCTGGCACCAGTT  673

seq1  ATATTGTAAGAACAGAATATCCTGAATGACCTGGTCATTCAAGACTGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTAAGAACAGAATATCCTGAATGACCTGGTCATTCAAGACTGGCA  723

seq1  TACTCATTCAAGACACAACTCAAAGAGCGTTCAGGTAATTGGCTGAAATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTCAAGACACAACTCAAAGAGCGTTCAGGTAATTGGCTGAAATA  773

seq1  AAAGCACAGGGTAGACGGCATTGCAAGAGTCTGGATAGTGTTTGTATGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGGGTAGACGGCATTGCAAGAGTCTGGATAGTGTTTGTATGTT  823

seq1  TGCTCTTTATTTATGTTTAAAGGTCATCCATGGTGTACTTACTGAGTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTATTTATGTTTAAAGGTCATCCATGGTGTACTTACTGAGTCTC  873

seq1  CCCCAAAGGAGACTACTTTGCTCTTCCTTAGGATGTGTTGTCAATAATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGAGACTACTTTGCTCTTCCTTAGGATGTGTTGTCAATAATTA  923

seq1  GCCAATGCTTACAATGGGGGGTAATTTCTCCAATTCAGTGCAAATGAAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCTTACAATGGGGGGTAATTTCTCCAATTCAGTGCAAATGAAAT  973

seq1  GATACATTATTGACGTGTTCACAAGGTTCTTTTTCATTGCTACACATATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTATTGACGTGTTCACAAGGTTCTTTTTCATTGCTACACATATG  1023

seq1  GTGTCTCAGAGAATGCATTAGCTTACCATTCCCACAGTCCATAAAGGTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAGAGAATGCATTAGCTTACCATTCCCACAGTCCATAAAGGTAT  1073

seq1  GAAAAGGCTTCAAAACTTCACTTTTCTGAGTTTGAATGTTTTTGGCTTCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGCTTCAAAACTTCACTTTTCTGAGTTTGAATGTTTTTGGCTTCT  1123

seq1  GGCAATGGCAAGGACCCATCGATCAAGAACAGAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGGCAAGGACCCATCGATCAAGAACAGAGAATTC  1162


seq1: chr18_58370988_58372085
seq2: B6Ng01-197N21.g_63_1179

seq1  GAATTCATATCATGGGGATGGAGACTAGGCCACGCGCTGGCGCCACAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCATGGGGATGGAGACTAGGCCACGCGCTGGCGCCACAGTC  50

seq1  TCAAGGAGTTCTTAGAGGAGATGTGTTCAGGTGTGACCCCTGGCAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGTTCTTAGAGGAGATGTGTTCAGGTGTGACCCCTGGCAGAACT  100

seq1  CTGCCTGGGTCCTTGAACAGGATGGTTTGTTGGGGGTCAGGGGTGGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGGGTCCTTGAACAGGATGGTTTGTTGGGGGTCAGGGGTGGGGGC  150

seq1  GGTCACTTGTCAACATAGCTGGTAAATGGGACTGGGCGTGGCTTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTGTCAACATAGCTGGTAAATGGGACTGGGCGTGGCTTTAGTTT  200

seq1  TTGTCTTGGACCCCTTCTGATTAATGATTAAACCTGACAAATGGTGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTGGACCCCTTCTGATTAATGATTAAACCTGACAAATGGTGCAAT  250

seq1  GAATGGTTTGTAAATTTAGGGCGTCTCTTGGCCAGATTCTGGGGTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTTGTAAATTTAGGGCGTCTCTTGGCCAGATTCTGGGGTCTTTT  300

seq1  GTGACCTTGCTTTCAGGAGGTCTCTATGAATCCCTTGCCATCTCTTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTGCTTTCAGGAGGTCTCTATGAATCCCTTGCCATCTCTTAGTG  350

seq1  GAAGTAATGGGCCAGGGGACCACACACCTCTGAAGACTGGGAATGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATGGGCCAGGGGACCACACACCTCTGAAGACTGGGAATGAGCAG  400

seq1  GCACGGTTTAGGAAATGGTTCTTGAGAGCAGTGTCCGGCTCATTCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTTTAGGAAATGGTTCTTGAGAGCAGTGTCCGGCTCATTCCAGCC  450

seq1  TAGAGAGCTTGACTTTAAAAGAAATGAGTGTGCATGCTTGTTTTTCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCTTGACTTTAAAAGAAATGAGTGTGCATGCTTGTTTTTCCTAG  500

seq1  CCCGGATTGTCCAGATGTGCTATTTGACAGCCAAAAAATTCTTGGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATTGTCCAGATGTGCTATTTGACAGCCAAAAAATTCTTGGAGAGT  550

seq1  TGGCACACCTCCCTCCTTTATTTCCCCAGTGTAGTTGTAGTTGGCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACCTCCCTCCTTTATTTCCCCAGTGTAGTTGTAGTTGGCAGACA  600

seq1  AAGACTCTCAGGTAGTAAGTAGCCCTTCTAACAGCATCCTTGGAGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCAGGTAGTAAGTAGCCCTTCTAACAGCATCCTTGGAGCAGAA  650

seq1  GAAAAAGTAGGAGTCACCTCAGTTTAGGGGAGGGGAATCTGACAGCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTAGGAGTCACCTCAGTTTAGGGGAGGGGAATCTGACAGCAGTA  700

seq1  GAGGTATTTCCCCCCTTCCCCCAAGTTTTGAGTGGAACAAATAATTAAAG  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGGTATTTCCCCCCTTTCCCCAAGTTTTGAGTGGAACAAATAATTAAAG  750

seq1  AAGTAAATAAGTGACCTCATGAGTTAAAGCAGAATTTTAATCTTACCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATAAGTGACCTCATGAGTTAAAGCAGAATTTTAATCTTACCTGC  800

seq1  GATTTCTCATCTAATACTTAAATG-ATTTCATTTCTGCTT-ATTACATTA  848
      |||||||||||| ||||||||||| ||||||||||||||| |||||||||
seq2  GATTTCTCATCT-ATACTTAAATGAATTTCATTTCTGCTTAATTACATTA  849

seq1  AGCTCAAA-TGTTCTAAAATCGCATATGTCTGTATTCTCACATTCCCT-A  896
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AGCTCAAATTGTTCTAAAATCGCATATGTCTGTATTCTCACATTCCCTAA  899

seq1  ATACCGCTTTTAGGAACCTGC-ATAAAAAATACTTGG-AAAAAATAGAAA  944
      ||||||||||||||||||||| | ||||||||||||| ||||||||||||
seq2  ATACCGCTTTTAGGAACCTGCAAAAAAAAATACTTGGAAAAAAATAGAAA  949

seq1  ATGAGGGATCCATTAAA-CTA-TTCATTGCAG-CACTGTTGTGATAGCCA  991
      ||||||||||||||||| ||| |||||||||| ||||| |||||||||||
seq2  ATGAGGGATCCATTAAACCTATTTCATTGCAGCCACTG-TGTGATAGCCA  998

seq1  AGG-ACT-AGTTTTGTAAACA--TTTCCTCAATAAAGAACTGGCTGCACA  1037
      ||| ||| |||||||||||||  || |||||||||||||||||||||   
seq2  AGGAACTAAGTTTTGTAAACAATTTCCCTCAATAAAGAACTGGCTGCCAC  1048

seq1  CATG-CTTC-ATTCGTTCTATGG-AATA-CTACGCAGATGAAAGAAAAAA  1083
      |||| |||| ||||||||||||| |||| ||||||| |||||| ||||||
seq2  CATGCCTTCAATTCGTTCTATGGAAATATCTACGCAAATGAAAAAAAAAA  1098

seq1  ---TAATTAGGAG-CACTG  1098
          ||||||||| |||||
seq2  AATAAATTAGGAGCCACTG  1117


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