BAC Information

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BAC

Clone NameB6Ng01-197N23
Chromosome18 (Build37)
Map Location 48,759,864 - 48,882,745
singlet/doubletdoublet
Overlap geneLOC545470
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
Downstream geneDtwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197N23.bB6Ng01-197N23.g
ACCGA019620GA019621
length1,1511,129
definitionB6Ng01-197N23.b B6Ng01-197N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,759,864 - 48,761,012)(48,881,633 - 48,882,745)
sequence
gaattcaccatgttctgcttcctgttgaaacgagagaaaaccctctccta
caatgcaacacatttcctgactaccattctgaggttaacacatccttaaa
gtatataagatgatttaattcagcaatgaatttttgtagtcctatcttaa
atcctagataattaattgattcccttttttgtaattttaagggtatttta
atcctcaatacggcaaattttctttgtttcatcaaaaatttttttctaag
ataggtttctgaaacagccattaagatatcatccatataatgaataactt
ataactttggaaatttaaacctcattcacttagtactttatgtcttgatt
gtttttatttttgaataagacacttagctcaccttaaatttttctaccat
gaaggatcatgtgttattcctgtgacaaaacaggaaaaacagaaaaaact
tttcctatgaagggacctttaatattagttgctctgactattagggaaaa
acaaacaaagcattcaaacaagactcaaacaaagaaacaatgcatttcta
aattttgggccatttgtgctgtgacttgtggcagcagcaaagcctgtcag
gcattctttggaattcagttgttgccacactgcactgggggcctttagca
gaaagaactggcagacatcttaagccaaagagctctgagttatggcttcc
accaatttcattttttctattggaaaaagccttttttctttttctatttc
tataacttgtaatttagcactccatcacttcagtcctttccttatctaag
tctgctttattttgatctttcttagagaggataaagaacactgataatta
ctgacatgtaaataattccatgaccacggtaaatataccaaaactatatg
gggtccatgtgtcctctttcatagtgttttccttttatttatttatttac
tttttggagaatattgtctttttaattttgttaattttctctttccttca
gagatgtcactttgtatgcataactatttaacttatttttatttcttttt
tcacctttctttggagatgtttattctatgaatattaaagcctattattt
atttttctatgactgcatactgttctatatttgggtgtagttttaaattt
c

gaattcttaatttttccacggttcacaaatgatcttattcagagttatgg
aacccagttccaactggtatgtctacaacacaagttcctcagccaaggtt
cagggataatcactgaggcagataggggaagacaagaagagctagagacc
tggcagtttgttgtaagtctgctccatttaggaatgcccaagaagtggca
gccattttggtgagacttgaataccatgtgttctctttcaaataccacaa
atctcagttgaagctctcaaggaaacaaatgaaccaagtctttgcctttg
acccataagtgaagtgtctttcataaccaataaatccacagatatgagaa
aaagcatgtatttctgaacagtcacagaaagcctgaacataaaaccaatt
aatatgggaaaactaagataataatagcacattggaaatataaacagcaa
ttttgagcttttgacttaaaaataagagcatgcaaataattaaaataaaa
tcaggttgcataaccatattaggtgaacatacattataaaaatatagatg
aaatataaatatcaaattttcatacttcttctgagtataaaagttgcaaa
tcatttaaattcctccatatacaacacaacatattaacattaggacatca
agtaaatattcataagacattactcacacattaaatttttctgtttaatt
tctttgcctagattaagttgatatagtgacatacaagtagaaaattaagt
atatcttggggttgtgattatttgcatgtgtaaaagtatatatatatata
tatatatatgcatatatatatatatatatatgcatatatatatatatata
tatatatatgtttcacattaatcttcactcacctatctctcatatgtatg
ggtgttagtgaaaataaaactttaaagtgtattttaaaaaataatatttt
taggttgggattttgctttttcaagggtattttacaggaacttgtgaatt
cctagaattctttcattaatactaattaatgaattaagaataaaattcaa
tttaaattgaatgaatttaattatatttcatagaaagcaccagcacttag
tgttcttcgagaaaaactcagcactcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48759864_48761012
seq2: B6Ng01-197N23.b_47_1197

seq1  GAATTCACCATGTTCTGCTTCCTGTTGAAACGAGAGAAAACCCTCTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGTTCTGCTTCCTGTTGAAACGAGAGAAAACCCTCTCCTA  50

seq1  CAATGCAACACATTTCCTGACTACCATTCTGAGGTTAACACATCCTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAACACATTTCCTGACTACCATTCTGAGGTTAACACATCCTTAAA  100

seq1  GTATATAAGATGATTTAATTCAGCAATGAATTTTTGTAGTCCTATCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAGATGATTTAATTCAGCAATGAATTTTTGTAGTCCTATCTTAA  150

seq1  ATCCTAGATAATTAATTGATTCCCTTTTTTGTAATTTTAAGGGTATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGATAATTAATTGATTCCCTTTTTTGTAATTTTAAGGGTATTTTA  200

seq1  ATCCTCAATACGGCAAATTTTCTTTGTTTCATCAAAAATTTTTTTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAATACGGCAAATTTTCTTTGTTTCATCAAAAATTTTTTTCTAAG  250

seq1  ATAGGTTTCTGAAACAGCCATTAAGATATCATCCATATAATGAATAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTCTGAAACAGCCATTAAGATATCATCCATATAATGAATAACTT  300

seq1  ATAACTTTGGAAATTTAAACCTCATTCACTTAGTACTTTATGTCTTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTGGAAATTTAAACCTCATTCACTTAGTACTTTATGTCTTGATT  350

seq1  GTTTTTATTTTTGAATAAGACACTTAGCTCACCTTAAATTTTTCTACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTTTTGAATAAGACACTTAGCTCACCTTAAATTTTTCTACCAT  400

seq1  GAAGGATCATGTGTTATTCCTGTGACAAAACAGGAAAAACAGAAAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCATGTGTTATTCCTGTGACAAAACAGGAAAAACAGAAAAAACT  450

seq1  TTTCCTATGAAGGGACCTTTAATATTAGTTGCTCTGACTATTAGGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGAAGGGACCTTTAATATTAGTTGCTCTGACTATTAGGGAAAA  500

seq1  ACAAACAAAGCATTCAAACAAGACTCAAACAAAGAAACAATGCATTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAGCATTCAAACAAGACTCAAACAAAGAAACAATGCATTTCTA  550

seq1  AATTTTGGGCCATTTGTGCTGTGACTTGTGGCAGCAGCAAAGCCTGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGCCATTTGTGCTGTGACTTGTGGCAGCAGCAAAGCCTGTCAG  600

seq1  GCATTCTTTGGAATTCAGTTGTTGCCACACTGCACTGGGGGCCTTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTTGGAATTCAGTTGTTGCCACACTGCACTGGGGGCCTTTAGCA  650

seq1  GAAAGAACTGGCAGACATCTTAAGCCAAAGAGCTCTGAGTTATGGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTGGCAGACATCTTAAGCCAAAGAGCTCTGAGTTATGGCTTCC  700

seq1  ACCAATTTCATTTTTTCTATTGGAAAAAGCCTTTTTTCTTTTTCTATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTTCATTTTTTCTATTGGAAAAAGCCTTTTTTCTTTTTCTATTTC  750

seq1  TATAACTTGTAATTTAGCACTCCATCACTTCAGTCCTTTCCTTATCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTGTAATTTAGCACTCCATCACTTCAGTCCTTTCCTTATCTAAG  800

seq1  TCTGCTTTATTTTGATCTTTCTTAGAGAGGATAAAGAACACTGATAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTATTTTGATCTTTCTTAGAGAGGATAAAGAACACTGATAATTA  850

seq1  CTGACATGTAAATAATTCCATGACCACGGTAAATATACCAAAACTATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGTAAATAATTCCATGACCACGGTAAATATACCAAAACTATATG  900

seq1  GGGTCCATGTGTCCTCTTTCATAGTGTTTTCCTTTTATTTATTTATTTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATGTGTCCTCTTTCATAGTGTTTTCCTTTTATTTATTTATTTAC  950

seq1  TTTTTGGAGAATATTGTCTTTTTAATTTTGTTAATTTTCTCCTTCCTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTTTGGAGAATATTGTCTTTTTAATTTTGTTAATTTTCTCTTTCCTTCA  1000

seq1  GAGATGTCACTTTGTATGCATAACTATTTAACTTATTTTTATTTCTTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCACTTTGTATGCATAACTATTTAACTTATTTTTATTTCTTTTT  1050

seq1  TCACCTTTCTTTGGAGATG-TTATTCTATG-ATATTTAAGCTTAATATTT  1098
      ||||||||||||||||||| |||||||||| ||||| |||| || |||||
seq2  TCACCTTTCTTTGGAGATGTTTATTCTATGAATATTAAAGCCTATTATTT  1100

seq1  A-TTTTCTATGACTGTATTACTG-TCTATATTTGGTTTGTAGTTTTTAAT  1146
      | ||||||||||||| | ||||| |||||||||||  ||||||||| |||
seq2  ATTTTTCTATGACTGCA-TACTGTTCTATATTTGG-GTGTAGTTTTAAAT  1148

seq1  TTC  1149
      |||
seq2  TTC  1151


seq1: chr18_48881633_48882745
seq2: B6Ng01-197N23.g_65_1193 (reverse)

seq1  AAAGGGTGCT--GTGTTTCTCGAAG-ACACT-AGTGCT-GTGCCTTCTAT  45
      |||| |||||  || |||||||||| ||||| |||||| |||| ||||||
seq2  AAAGAGTGCTGAGTTTTTCTCGAAGAACACTAAGTGCTGGTGCTTTCTAT  50

seq1  TGAATAT-ATTAATTTCATCAATTTTAAATTGAATTTTATCTTAAATTCA  94
        ||||| ||||| |||||  | |||||||||||||||||  | ||||||
seq2  GAAATATAATTAAATTCATTCAATTTAAATTGAATTTTATTCTTAATTCA  100

seq1  TTAATTAGTATTAATGAAAGAATTCTAGG-ATTCACAAGTT-CTGT-AAA  141
      ||||||||||||||||||||||||||||| ||||||||||| |||| |||
seq2  TTAATTAGTATTAATGAAAGAATTCTAGGAATTCACAAGTTCCTGTAAAA  150

seq1  TACCCTTG-AAAAGC-AAATCCCAACCT-AAAATATTATTTTTTAAAATA  188
      |||||||| |||||| |||||||||||| |||||||||||||||||||||
seq2  TACCCTTGAAAAAGCAAAATCCCAACCTAAAAATATTATTTTTTAAAATA  200

seq1  CACTTTAAAGTTTTA-TTTCACTAACACCCATACATATGAGAGATAGGTG  237
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTTTAAAGTTTTATTTTCACTAACACCCATACATATGAGAGATAGGTG  250

seq1  AGTGGAGA-TAATGTG-AACATATATATATATATATATATATATATGCAT  285
      |||| ||| ||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGAAGATTAATGTGAAACATATATATATATATATATATATATATGCAT  300

seq1  ATATATATATATATATATGCATATATATATATATATATATATACTTTTAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATGCATATATATATATATATATATATACTTTTAC  350

seq1  ACATGCAAATAATCACAA-CCCAAGATATACTTAATTTTCTACTTGTATG  384
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATGCAAATAATCACAACCCCAAGATATACTTAATTTTCTACTTGTATG  400

seq1  TCACTATATCAACTTAATCTAGGCAAAGAAATTAAACAGAAAAATTTAAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATATCAACTTAATCTAGGCAAAGAAATTAAACAGAAAAATTTAAT  450

seq1  GTGTGAGTAATGTCTTATGAATATTTACTTGATGTCCTAATGTTAATATG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTAATGTCTTATGAATATTTACTTGATGTCCTAATGTTAATATG  500

seq1  TTGTGTTGTATATGGAGGAATTTAAATGATTTGCAACTTTTATACTCAGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTATATGGAGGAATTTAAATGATTTGCAACTTTTATACTCAGA  550

seq1  AGAAGTATGAAAATTTGATATTTATATTTCATCTATATTTTTATAATGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATGAAAATTTGATATTTATATTTCATCTATATTTTTATAATGTA  600

seq1  TGTTCACCTAATATGGTTATGCAACCTGATTTTATTTTAATTATTTGCAT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACCTAATATGGTTATGCAACCTGATTTTATTTTAATTATTTGCAT  650

seq1  GCTCTTATTTTTAAGTCAAAAGCTCAAAATTGCTGTTTATATTTCCAATG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATTTTTAAGTCAAAAGCTCAAAATTGCTGTTTATATTTCCAATG  700

seq1  TGCTATTATTATCTTAGTTTTCCCATATTAATTGGTTTTATGTTCAGGCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATTATCTTAGTTTTCCCATATTAATTGGTTTTATGTTCAGGCT  750

seq1  TTCTGTGACTGTTCAGAAATACATGCTTTTTCTCATATCTGTGGATTTAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACTGTTCAGAAATACATGCTTTTTCTCATATCTGTGGATTTAT  800

seq1  TGGTTATGAAAGACACTTCACTTATGGGTCAAAGGCAAAGACTTGGTTCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGAAAGACACTTCACTTATGGGTCAAAGGCAAAGACTTGGTTCA  850

seq1  TTTGTTTCCTTGAGAGCTTCAACTGAGATTTGTGGTATTTGAAAGAGAAC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCTTGAGAGCTTCAACTGAGATTTGTGGTATTTGAAAGAGAAC  900

seq1  ACATGGTATTCAAGTCTCACCAAAATGGCTGCCACTTCTTGGGCATTCCT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTATTCAAGTCTCACCAAAATGGCTGCCACTTCTTGGGCATTCCT  950

seq1  AAATGGAGCAGACTTACAACAAACTGCCAGGTCTCTAGCTCTTCTTGTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCAGACTTACAACAAACTGCCAGGTCTCTAGCTCTTCTTGTCT  1000

seq1  TCCCCTATCTGCCTCAGTGATTATCCCTGAACCTTGGCTGAGGAACTTGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATCTGCCTCAGTGATTATCCCTGAACCTTGGCTGAGGAACTTGT  1050

seq1  GTTGTAGACATACCAGTTGGAACTGGGTTCCATAACTCTGAATAAGATCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGACATACCAGTTGGAACTGGGTTCCATAACTCTGAATAAGATCA  1100

seq1  TTTGTGAACCGTGGAAAAATTAAGAATTC  1113
      |||||||||||||||||||||||||||||
seq2  TTTGTGAACCGTGGAAAAATTAAGAATTC  1129


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