BAC Information

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BAC

Clone NameB6Ng01-199A09
Chromosome18 (Build37)
Map Location 17,334,050 - 17,449,724
singlet/doubletdoublet
Overlap gene4921533I20Rik
Upstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199A09.bB6Ng01-199A09.g
ACCGA020465GA020466
length1,1741,156
definitionB6Ng01-199A09.b B6Ng01-199A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,448,556 - 17,449,724)(17,334,050 - 17,335,210)
sequence
gaattctgagataggtagcctttatattactccatccctagggacattcc
attactggggcatggaaactggaacctactactggggaggtctggaaact
tgctgactcattgtccttgctttaggctatgtggctgggcaccttctagt
ttctgactagttgactgaagcctggattttttttttttttaactgacttg
tctggacttgcccagttcttaggtctagtctcctagactgccaatttcaa
atctgtcttggaaccagcctagccttctcaaaatgaggattatatcatac
ttccgtataggctttggctcatttgtggagaaaactgtgatgtcctacat
tagtacaacaccagcagagctaagaaacccttgtacgaatgaacaagaca
cactaatccatttagttatagaaaagagctcagttttacagacaaataag
agtttttcaatgaacttgttggttatcagtccatatctggaaacttggac
tctccagaaggtggttttgatgcaattacccaggttgctgtttttgtatt
gctgattgactggaggagctgagagttctacatcttgttccaagggcaaa
caggagaagactgactcttctgcaatggacagagattcatagcccacccc
aacagtgacacactccttcaactagtacacacctcctaacagtaccactc
cctatgaggtaagcattttaaactaccacatgatatgagagaaaaatcat
cctctctgagctgacaaaatattccctaatggcagagttttcacagaagg
caagaagcaaagactgttgcattcacacttctgctgcaggcacacacaca
aagcatctccacaatagttaaagaatcgctgtgggggtgataagaaaata
agagagactctagcgagaaaacgaagcacatcagagctaccagcgtgcac
cttctatcaaagtcgtcaatatgagcacttaagtgttgtgagaagtgtaa
ctcctgaagcaggacacttcaaggacagtgacattcctgaaaagaggtat
tataaacagaatgaaacagttgtttcttgttgagcttccatataaatcaa
ggtgaaacatgttgaccaagaccatgatatatataggcaactccaacatg
gatctctggaatagatcaggcaca
gaattccatgaagcttcctgtttctgctacgtcagtacatgtatgacagg
aacatggcccagattttttcacagattctagagttactgacttaagtagg
tatacttgcataactaccctactcactgagccctttctgcagcttgcctc
catcttactgaagccagcattcataacttagggcacaacggcaggccagc
cgcaattccaggaatcatccttcctcaactttgcaaggtctgggattgtt
ggcatcttcttctatacccagctttaatgtgggttctgaggattcaaatc
caggtccttattattttactttatcagttgactcaccaggctatcttctg
tgtgccactcaatcccactattaaagttaatatcaattcatagtgtcaat
tgtgaacttttagtaggtagagaaatgccagagtaagaaggatgataaag
gtgcaaagaagagatgtgtattaattagatatattctgaaacatatcagc
tatgagtagaatggtcattctaataaaaatacaggcctattagaaataat
cggttgagagatcaaataatagctgtttaagggcagggttttagacttta
ttgaaatatgcattgaatccagctattgaaacaacttgattaaccataaa
agaacatttcctttcccgtgccttcgtttcataaagccattcccagaaga
ctaatttcacatcactctgtaatgcgctgtcttgaagaactatttcctgc
taggattcttcagcaatatatttttctctaaatgccaaagcacaggtgga
atagggaagatggtttactaaaatttgagatgagccaagaatagacattt
tcttgaaaaatgtctaatttgaaaacttataggtataaacaccaaagctg
ttctagtagtactgagaaatggaaaaaatagagagaacaaagtgaaacat
tatggtaacctttaaaatctaatattatttttgacctgaagctggttttc
taacagatatcaccaattcatcataaagtatattatgatgtacctagcct
acagtgtctgtgtcattcttcatgattccgttggaatgcctaatgatttt
ctggtttcatggattatttgatttttcgatattattggaacatagagcta
ccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17448556_17449724
seq2: B6Ng01-199A09.b_47_1220 (reverse)

seq1  TGTG-CTGATCTATCTCAG-GATTCATGTTGTGAGTTTGCCTTATTATAT  48
      |||| |||||||||  ||| ||| ||||||| ||| ||||||   |||||
seq2  TGTGCCTGATCTATTCCAGAGATCCATGTTG-GAG-TTGCCTATATATAT  48

seq1  CATTGTCTTGGTCAACAATGTTCACC-TGATTAATAT-GAAGCTCAACCA  96
      ||| |||||||||||||   |||||| ||||| |||| |||||||||| |
seq2  CATGGTCTTGGTCAACATGTTTCACCTTGATTTATATGGAAGCTCAACAA  98

seq1  GAAACAACTGTTTCATTCTGTTTATAATACCTCTTTTCAGG-ATGTCACT  145
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAACAACTGTTTCATTCTGTTTATAATACCTCTTTTCAGGAATGTCACT  148

seq1  GTCCCTGAAGTGTCCTGCTTCAGGAGTTACACTTTCTCAC-ACACTTAAG  194
      |||| ||||||||||||||||||||||||||| ||||||| |||||||||
seq2  GTCCTTGAAGTGTCCTGCTTCAGGAGTTACAC-TTCTCACAACACTTAAG  197

seq1  TGCTCATATTGACGACTTTGATAG-AGGTGCACGCTGGTAGCTCTGATGT  243
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTCATATTGACGACTTTGATAGAAGGTGCACGCTGGTAGCTCTGATGT  247

seq1  GCTTCGTTTTCTCGCTAGAGTCTCTCTTATTTTC-TATCACCCCCACAGC  292
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTTCGTTTTCTCGCTAGAGTCTCTCTTATTTTCTTATCACCCCCACAGC  297

seq1  GATTCTTTAACTATTGTGGAGATGCTTTGTGTGTGTGCCTGCAGCAGAAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTAACTATTGTGGAGATGCTTTGTGTGTGTGCCTGCAGCAGAAG  347

seq1  TGTGAATGCAACAGTCTTTGCTTCTTGCCTTCTGTGAAAACTCTGCCATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGCAACAGTCTTTGCTTCTTGCCTTCTGTGAAAACTCTGCCATT  397

seq1  AGGGAATATTTTGTCAGCTCAGAGAGGATGATTTTTCTCTCATATCATGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATATTTTGTCAGCTCAGAGAGGATGATTTTTCTCTCATATCATGT  447

seq1  GGTAGTTTAAAATGCTTACCTCATAGGGAGTGGTACTGTTAGGAGGTGTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTAAAATGCTTACCTCATAGGGAGTGGTACTGTTAGGAGGTGTG  497

seq1  TACTAGTTGAAGGAGTGTGTCACTGTTGGGGTGGGCTATGAATCTCTGTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTTGAAGGAGTGTGTCACTGTTGGGGTGGGCTATGAATCTCTGTC  547

seq1  CATTGCAGAAGAGTCAGTCTTCTCCTGTTTGCCCTTGGAACAAGATGTAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGAAGAGTCAGTCTTCTCCTGTTTGCCCTTGGAACAAGATGTAG  597

seq1  AACTCTCAGCTCCTCCAGTCAATCAGCAATACAAAAACAGCAACCTGGGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAGCTCCTCCAGTCAATCAGCAATACAAAAACAGCAACCTGGGT  647

seq1  AATTGCATCAAAACCACCTTCTGGAGAGTCCAAGTTTCCAGATATGGACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATCAAAACCACCTTCTGGAGAGTCCAAGTTTCCAGATATGGACT  697

seq1  GATAACCAACAAGTTCATTGAAAAACTCTTATTTGTCTGTAAAACTGAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCAACAAGTTCATTGAAAAACTCTTATTTGTCTGTAAAACTGAGC  747

seq1  TCTTTTCTATAACTAAATGGATTAGTGTGTCTTGTTCATTCGTACAAGGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTATAACTAAATGGATTAGTGTGTCTTGTTCATTCGTACAAGGG  797

seq1  TTTCTTAGCTCTGCTGGTGTTGTACTAATGTAGGACATCACAGTTTTCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCTCTGCTGGTGTTGTACTAATGTAGGACATCACAGTTTTCTC  847

seq1  CACAAATGAGCCAAAGCCTATACGGAAGTATGATATAATCCTCATTTTGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGAGCCAAAGCCTATACGGAAGTATGATATAATCCTCATTTTGA  897

seq1  GAAGGCTAGGCTGGTTCCAAGACAGATTTGAAATTGGCAGTCTAGGAGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTAGGCTGGTTCCAAGACAGATTTGAAATTGGCAGTCTAGGAGAC  947

seq1  TAGACCTAAGAACTGGGCAAGTCCAGACAAGTCAGTTAAAAAAAAAAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTAAGAACTGGGCAAGTCCAGACAAGTCAGTTAAAAAAAAAAAAA  997

seq1  ATCCAGGCTTCAGTCAACTAGTCAGAAACTAGAAGGTGCCCAGCCACATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCTTCAGTCAACTAGTCAGAAACTAGAAGGTGCCCAGCCACATA  1047

seq1  GCCTAAAGCAAGGACAATGAGTCAGCAAGTTTCCAGACCTCCCCAGTAGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGCAAGGACAATGAGTCAGCAAGTTTCCAGACCTCCCCAGTAGT  1097

seq1  AGGTTCCAGTTTCCATGCCCCAGTAATGGAATGTCCCTAGGGATGGAGTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCAGTTTCCATGCCCCAGTAATGGAATGTCCCTAGGGATGGAGTA  1147

seq1  ATATAAAGGCTACCTATCTCAGAATTC  1169
      |||||||||||||||||||||||||||
seq2  ATATAAAGGCTACCTATCTCAGAATTC  1174

seq1: chr18_17334050_17335210
seq2: B6Ng01-199A09.g_61_1216

seq1  GAATTCCATGAAGCTTCCTGTTTCTGCTACGTCAGTACATGTATGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAGCTTCCTGTTTCTGCTACGTCAGTACATGTATGACAGG  50

seq1  AACATGGCCCAGATTTTTTCACAGATTCTAGAGTTACTGACTTAAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCCCAGATTTTTTCACAGATTCTAGAGTTACTGACTTAAGTAGG  100

seq1  TATACTTGCATAACTACCCTACTCACTGAGCCCTTTCTGCAGCTTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGCATAACTACCCTACTCACTGAGCCCTTTCTGCAGCTTGCCTC  150

seq1  CATCTTACTGAAGCCAGCATTCATAACTTAGGGCACAACGGCAGGCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTGAAGCCAGCATTCATAACTTAGGGCACAACGGCAGGCCAGC  200

seq1  CGCAATTCCAGGAATCATCCTTCCTCAACTTTGCAAGGTCTGGGATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATTCCAGGAATCATCCTTCCTCAACTTTGCAAGGTCTGGGATTGTT  250

seq1  GGCATCTTCTTCTATACCCAGCTTTAATGTGGGTTCTGAGGATTCAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTCTTCTATACCCAGCTTTAATGTGGGTTCTGAGGATTCAAATC  300

seq1  CAGGTCCTTATTATTTTACTTTATCAGTTGACTCACCAGGCTATCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTATTATTTTACTTTATCAGTTGACTCACCAGGCTATCTTCTG  350

seq1  TGTGCCACTCAATCCCACTATTAAAGTTAATATCAATTCATAGTGTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACTCAATCCCACTATTAAAGTTAATATCAATTCATAGTGTCAAT  400

seq1  TGTGAACTTTTAGTAGGTAGAGAAATGCCAGAGTAAGAAGGATGATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTTTTAGTAGGTAGAGAAATGCCAGAGTAAGAAGGATGATAAAG  450

seq1  GTGCAAAGAAGAGATGTGTATTAATTAGATATATTCTGAAACATATCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGAAGAGATGTGTATTAATTAGATATATTCTGAAACATATCAGC  500

seq1  TATGAGTAGAATGGTCATTCTAATAAAAATACAGGCCTATTAGAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTAGAATGGTCATTCTAATAAAAATACAGGCCTATTAGAAATAAT  550

seq1  CGGTTGAGAGATCAAATAATAGCTGTTTAAGGGCAGGGTTTTAGACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGAGAGATCAAATAATAGCTGTTTAAGGGCAGGGTTTTAGACTTTA  600

seq1  TTGAAATATGCATTGAATCCAGCTATTGAAACAACTTGATTAACCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATGCATTGAATCCAGCTATTGAAACAACTTGATTAACCATAAA  650

seq1  AGAACATTTCCTTTCCCGTGCCTTCGTTTCATAAAGCCATTCCCAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTCCTTTCCCGTGCCTTCGTTTCATAAAGCCATTCCCAGAAGA  700

seq1  CTAATTTCACATCACTCTGTAATGCGCTGTCTTGAAGAACTATTTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCACATCACTCTGTAATGCGCTGTCTTGAAGAACTATTTCCTGC  750

seq1  TAGGATTCTTCAGCAATATATTTTTCTCTAAATGCCAAAGCACAGGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCTTCAGCAATATATTTTTCTCTAAATGCCAAAGCACAGGTGGA  800

seq1  ATAGGGAAGATGGTTTACTAAAATTTGAGATGAGCCAAGAATAGACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAGATGGTTTACTAAAATTTGAGATGAGCCAAGAATAGACATTT  850

seq1  TCTTGAAAAATGTCTAATTTGAAAACTTATAGGTATAAACACCAAAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAATGTCTAATTTGAAAACTTATAGGTATAAACACCAAAGCTG  900

seq1  TTCTAGTAGTACTGAGAAATGGAAAAAATAGAGAGAACAAGGTGAAAACA  950
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TTCTAGTAGTACTGAGAAATGGAAAAAATAGAGAGAACAAAGTG-AAACA  949

seq1  TTATGGTAACCTTTAAAAATCTAATATTATTTTTGACCTGAAGCTGGTTT  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTATGGTAACCTTT-AAAATCTAATATTATTTTTGACCTGAAGCTGGTTT  998

seq1  TCTAACAGATAATCAC--AATCATCATAAAGTATA-TATGAATGTACCTA  1047
      |||||||||| |||||  | ||||||||||||||| |||| |||||||||
seq2  TCTAACAGAT-ATCACCAATTCATCATAAAGTATATTATG-ATGTACCTA  1046

seq1  GCCTACAAGTGTCTGTGTCATTCTTCATGA-TCCTTTTGGATGCTTAAAT  1096
      |||||| ||||||||||||||||||||||| ||| || | |||| | |||
seq2  GCCTAC-AGTGTCTGTGTCATTCTTCATGATTCCGTTGGAATGCCT-AAT  1094

seq1  GATTTTCTG--TTCATGGATATATTGTATTTTTTCTAAACCCTTATTGTG  1144
      |||||||||  ||||||||| |||| |  |||||| | |   |||||| |
seq2  GATTTTCTGGTTTCATGGAT-TATT-TGATTTTTCGATA---TTATTG-G  1138

seq1  AACATAGAGCTA-CTTCT  1161
      |||||||||||| |||||
seq2  AACATAGAGCTACCTTCT  1156