BAC Information

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BAC

Clone NameB6Ng01-199F20
Chromosome18 (Build37)
Map Location 81,565,996 - 81,567,086
singlet/doubletsinglet
Overlap genenone
Upstream geneCtdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream geneLOC100039458, LOC100040871, B020010K11Rik, Galr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F20.bB6Ng01-199F20.g
ACCGA020716GA020717
length1,131943
definitionB6Ng01-199F20.b B6Ng01-199F20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttccctgtaagttccagccaagatttcctctataatattgcc
taattttttttttttttgcagaagctaaagctataatttttctaacatcc
ttgaagtctaattaatatcgcaatggagagagaatctatttcatggcttg
cagggaaagggcattatctgtaagctgcaataacgcctttcaggtgctcg
gtgacatggcgtcctatgcaatacaattaaggagctcccagatctttggg
gctttattctctgtgacctatggcaaaaattaactgctgccttgggcaaa
agacaaaagaataggaacataatttgtaatcagatagcattttctttcct
gggtgaagaattatacatgaagaggaacagctagcagcccaggctgctgc
aacaatctctgacctgtttggttgtgcatctacttgtcttgaagataagt
catatttttagtgtatataccgggattttcatataattttaaggcatata
aacagtgcatctattcagcacagatgaatattcatttaatttaactgtga
tgtcaggcagcacataagtatgaagacactgtgcttttccttttgtgtgc
ctaaaatgcaacatattatgccaggaatacctttgcctttgattagacat
ggtgtggttgttacttacaaccaaaattttaaaacaagaaaattttcaaa
tagcacagaaattagtcacttttctttctatatctctgtataatgcaatg
ttaattttcctacaaactttagaagtaaaagacaagaaaaagcctgccac
cgttactaggggcttggttttgttgacttcatattttgttgttttctctc
ttcatctcagtgttatctcaggaaacgggagcctgagcagcaacgtaaga
tgtttttctcgttaagttttaggaatcccgtgccatgttcacattggcac
aggcttcagaatgaattgctttgtttgagtgttttcccatggttactggg
ctccagaaatggatttttatgggcaagttgtgttggacgctgatgcctgg
gggcctttgccacactttaccagctgcccattgcccacttctgggtaaga
atggaggatcggtgtggcgcagtgcacagat

gaattctctgtttagctctgtaccctatttttaaaaattgggttgtttgt
ttttttttttaaagtcaaacttcttgagttccttgtgtagtgtggatatt
agacctctatataatgtagggtcagtgaagatttttttcccaatctgtag
gttgatgctttgttttactgacagtgccctttgccttacagaagattttc
agtttcatgaggtcccatctgccaattgttgatcttagagcctgcaccat
tggagttctgttcagaaaaattttccttgtgccaatgtgttcaaggttat
ttcccactttctcttctattagattcagtagtggggacctggaacctgaa
gagaccacctccagcagatagacatggtcccagtggagggatggggccac
ccacccatgttcaaaatttttgacccagaattattcctgtctaaaggaaa
tgcagagacaaaaatggaacagcgactaaaatggccattgagtgactgcc
ccaacctggtaaccatcccatgcttaggcatcaaaccctgacactattac
tgatgctatgctgtgctttcagacaggagcctagcatggccgtcctctga
gaggctgtaccagcagctgactgagacagatgcagatgctttcagccaaa
cattggactgaggtcaggacccttatgtaagagttagggaaaggactgaa
ggagctgaggggggtggcaacctcattggaagaccaacagtgtcaaccca
ccgggatccctcagagctcccagagactaaagccaccaaccaaagagagg
gcatgggctggttccatggccctgacacatacatagcagaggtccttcct
ttgtctggactcagtaggagaggatgtgcccagttcttgtaaagactttg
gatgccctccattggaaggggggatgctggaaggttggttgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81565996_81567086
seq2: B6Ng01-199F20.b_43_1173 (reverse)

seq1  ATCTGTGCACTGCGCCACACC-TTCCTC--ATCT--CCCAG-AGT-GGCA  43
      |||||||||||||||||||||  |||||   |||  ||||| ||| ||||
seq2  ATCTGTGCACTGCGCCACACCGATCCTCCATTCTTACCCAGAAGTGGGCA  50

seq1  --TGGCAGCT-GTAAGTTGTG--CAAGGCCCC--AGCATCAGCGTCC-AC  85
         ||||||| ||||  ||||   ||||||||   |||||||||||| ||
seq2  ATGGGCAGCTGGTAAAGTGTGGCAAAGGCCCCCAGGCATCAGCGTCCAAC  100

seq1  AC-ACTTGCC---ATAAATC--ATTCTGGAG-CCAGT-ACCAT-GGAAAA  126
      || |||||||   | |||||   |||||||| ||||| ||||| ||||||
seq2  ACAACTTGCCCATAAAAATCCATTTCTGGAGCCCAGTAACCATGGGAAAA  150

seq1  CACTCAA--CAAGC-ATTCACTTCTG-AGCCTGTG-CAATGTG-ACATGG  170
      |||||||   |||| ||||| ||||| |||||||| ||||||| ||||||
seq2  CACTCAAACAAAGCAATTCA-TTCTGAAGCCTGTGCCAATGTGAACATGG  199

seq1  CACGG--ATCCTAAAAC-TAACGAG-AAAACATCTTACGTTGCTGCTCA-  215
      |||||   ||||||||| ||||||| ||||||||||||||||||||||| 
seq2  CACGGGATTCCTAAAACTTAACGAGAAAAACATCTTACGTTGCTGCTCAG  249

seq1  GCTCC--GTTCCTGAGATAACACTGAGATGAAGAGAG-AAACA--CAAAT  260
      |||||   ||||||||||||||||||||||||||||| |||||   ||||
seq2  GCTCCCGTTTCCTGAGATAACACTGAGATGAAGAGAGAAAACAACAAAAT  299

seq1  ATGAAGTCAACAAAACCAAGCCCCTAGTAACGGTGGCAGGCTTTTTCTTG  310
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCAACAAAACCAAGCCCCTAGTAACGGTGGCAGGCTTTTTCTTG  349

seq1  TCTTTTACTTCTAAAGTTTGTAGGAAAATTAACATTGCATTATACAGAGA  360
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTCTAAAGTTTGTAGGAAAATTAACATTGCATTATACAGAGA  399

seq1  TATAGAAAG-AAAGTGACTAATTTCTGTGCTATTTGAAAATTTTCTTGTT  409
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGAAAAGTGACTAATTTCTGTGCTATTTGAAAATTTTCTTGTT  449

seq1  TTAAAATTTTGGTTGTAAGTAACAACCACACCATGTCTAATCAAAGGCAA  459
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTTGGTTGTAAGTAACAACCACACCATGTCTAATCAAAGGCAA  499

seq1  AGGTATTCCTGGCATAATATGTTGCATTTTAGGCACACAAAAGGAAAAGC  509
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTCCTGGCATAATATGTTGCATTTTAGGCACACAAAAGGAAAAGC  549

seq1  ACAGTGTCTTCATACTTATGTGCTGCCTGACATCACAGTTAAATTAAATG  559
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCTTCATACTTATGTGCTGCCTGACATCACAGTTAAATTAAATG  599

seq1  AATATTCATCTGTGCTGAATAGATGCACTGTTTATATGCCTTAAAATTAT  609
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATCTGTGCTGAATAGATGCACTGTTTATATGCCTTAAAATTAT  649

seq1  ATGAAAATCCCGGTATATACACTAAAAATATGACTTATCTTCAAGACAAG  659
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATCCCGGTATATACACTAAAAATATGACTTATCTTCAAGACAAG  699

seq1  TAGATGCACAACCAAACAGGTCAGAGATTGTTGCAGCAGCCTGGGCTGCT  709
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCACAACCAAACAGGTCAGAGATTGTTGCAGCAGCCTGGGCTGCT  749

seq1  AGCTGTTCCTCTTCATGTATAATTCTTCACCCAGGAAAGAAAATGCTATC  759
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCCTCTTCATGTATAATTCTTCACCCAGGAAAGAAAATGCTATC  799

seq1  TGATTACAAATTATGTTCCTATTCTTTTGTCTTTTGCCCAAGGCAGCAGT  809
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACAAATTATGTTCCTATTCTTTTGTCTTTTGCCCAAGGCAGCAGT  849

seq1  TAATTTTTGCCATAGGTCACAGAGAATAAAGCCCCAAAGATCTGGGAGCT  859
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTGCCATAGGTCACAGAGAATAAAGCCCCAAAGATCTGGGAGCT  899

seq1  CCTTAATTGTATTGCATAGGACGCCATGTCACCGAGCACCTGAAAGGCGT  909
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTGTATTGCATAGGACGCCATGTCACCGAGCACCTGAAAGGCGT  949

seq1  TATTGCAGCTTACAGATAATGCCCTTTCCCTGCAAGCCATGAAATAGATT  959
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGCTTACAGATAATGCCCTTTCCCTGCAAGCCATGAAATAGATT  999

seq1  CTCTCTCCATTGCGATATTAATTAGACTTCAAGGATGTTAGAAAAATTAT  1009
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCATTGCGATATTAATTAGACTTCAAGGATGTTAGAAAAATTAT  1049

seq1  AGCTTTAGCTTCTGCAAAAAAAAAAAAAATTAGGCAATATTATAGAGGAA  1059
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGCTTCTGCAAAAAAAAAAAAAATTAGGCAATATTATAGAGGAA  1099

seq1  ATCTTGGCTGGAACTTACAGGGAAATGAATTC  1091
      ||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTGGAACTTACAGGGAAATGAATTC  1131


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