BAC Information

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BAC

Clone NameB6Ng01-199L16
Chromosome18 (Build37)
Map Location 62,274,420 - 62,427,419
singlet/doubletdoublet
Overlap geneAdrb2
Upstream geneCsf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
Downstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199L16.bB6Ng01-199L16.g
ACCGA020987GA020988
length1,127997
definitionB6Ng01-199L16.b B6Ng01-199L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,274,420 - 62,275,522)(62,426,428 - 62,427,419)
sequence
gaattctctgcccgtttttacatctgggctactctatggctagtgctgca
gacatggcctttgcctcatggctcctgtcaaagttctgacatatgaacat
caatgcaaaaatgctcaataaaattcccgctaactgaacccaagaacaca
tcaaaacaatcatccatcctgaccaagaaggtttcattccagggatacag
atcactcacagatgaagaactaaccaagtaccactttctccatttctaga
accacacatgatgtaaggcctgcctacattctccaactgactctaggaaa
tgtgtcctcatctttgctcccaccagctccacggaacttcaaggctactt
ccttggagacgccattttggttgttcatgagcaatcaggtgtccttatta
ctttctcagaaaacatttctggcttccctcttaataccctccacatcctt
taaaactacatttgcttcccccaaacacttccttctctttttcttttcac
tagaaatcaaactacaaaggcctgtctgtcttgtcagtatgtatccaggg
cccagcacaacatctgtttgtaggaggtactggaggaacgtgttgataaa
atgatgggtacccaagtctttcatctgtacaacttacctggagaccagtg
accttctcccacgattgccagatattttattttagtcacagagtttagca
tctagctgtctaatcccgtcctttacagaagttttttgttttgtttttgt
ttgttttgtttttttttttgtttgataaggatgagcaaagtgctgagaat
gactccagctgcttggcctaagccccatctccatccccaaggcacgggga
gtactgaagaagagaaggtgaaaaggattgtaagagttagcacacgggga
gttaatgctaggaaccattgagatgtcttccggacacattatgggcctgt
tgcatgcatggaagtcacagtgaccgttggttattctagcaacacaagac
cagaaacaaggatcaagcccagtttaacattctagccccaggtagggtgg
aggattccttgaaccccactctttcgcttggaggttacaggcagctgatt
gaactttctgatggaagggagagtcac
gaattcagttcattccagtgtgagactcatgtagtagagtctttggaatc
tgctcttaatcaatggtctatgtccccaggaggaacgggcatttaaacaa
gtgactgtttccctaagacagcatcagagaagacaagggcaaggagacct
cgctgggaagatgacatctcctcacacataagcacaaactcttaaacaga
caccagcagtgaagccaagggtatgtgctctacttcctgtgctctgcaaa
taacagctgatgcaggcaggagagagctgcgtgtgggtgggaggagagaa
gagagctggagctgccttttgctagtggaaagattttctgagtcaggcac
aaataacccacaaatactaactgtttcccccccacccccttaaaaggcag
cacagtgacgttcttttaagctgtggtatgaaaaggaacgcagcaacttt
gagtttaattttctaattatttctggatggcagcacaaaaaacaaacaaa
caaaaaaatccccaactgagacgaagtcgcctttgtgaacttacctcctc
cttgattcctgagttcttcaccccagaatcccagagtgcaaagaaaacta
accttagctgaacgcaagccgaccagttatctcctgggcattttgtttgc
attgcactgaaaactgtccgagatttttctgcccacctctttcctattac
ttctgcctcgaagtcagtctttatctccacaaggaagaaacatttaaaag
gtgtcaatggccagggccaggcaatgcatattttgggtcactgttgttgt
cgttgccccgactttagagtttcactatggcctccatgagcctcctgtta
ggatgtagtctgattaatgtctaacacaagaagcagctcacattcacagg
actgctgctgaacatattggaggtaacagaaaatccaactttgaagggct
cctggacgagttgggtttttgtttgctttgttttgtttgtttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62274420_62275522
seq2: B6Ng01-199L16.b_36_1162

seq1  GAATTCTCTGCCCGTTTTTACATCTGGGCTACTCTATGGCTAGTGCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCCGTTTTTACATCTGGGCTACTCTATGGCTAGTGCTGCA  50

seq1  GACATGGCCTTTGCCTCATGGCTCCTGTCAAAGTTCTGACATATGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCCTTTGCCTCATGGCTCCTGTCAAAGTTCTGACATATGAACAT  100

seq1  CAATGCAAAAATGCTCAATAAAATTCCCGCTAACTGAACCCAAGAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAAATGCTCAATAAAATTCCCGCTAACTGAACCCAAGAACACA  150

seq1  TCAAAACAATCATCCATCCTGACCAAGAAGGTTTCATTCCAGGGATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAATCATCCATCCTGACCAAGAAGGTTTCATTCCAGGGATACAG  200

seq1  ATCACTCACAGATGAAGAACTAACCAAGTACCACTTTCTCCATTTCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCACAGATGAAGAACTAACCAAGTACCACTTTCTCCATTTCTAGA  250

seq1  ACCACACATGATGTAAGGCCTGCCTACATTCTCCAACTGACTCTAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACATGATGTAAGGCCTGCCTACATTCTCCAACTGACTCTAGGAAA  300

seq1  TGTGTCCTCATCTTTGCTCCCACCAGCTCCACGGAACTTCAAGGCTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCATCTTTGCTCCCACCAGCTCCACGGAACTTCAAGGCTACTT  350

seq1  CCTTGGAGACGCCATTTTGGTTGTTCATGAGCAATCAGGTGTCCTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGACGCCATTTTGGTTGTTCATGAGCAATCAGGTGTCCTTATTA  400

seq1  CTTTCTCAGAAAACATTTCTGGCTTCCCTCTTAATACCCTCCACATCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGAAAACATTTCTGGCTTCCCTCTTAATACCCTCCACATCCTT  450

seq1  TAAAACTACATTTGCTTCCCCCAAACACTTCCTTCTCTTTTTCTTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTACATTTGCTTCCCCCAAACACTTCCTTCTCTTTTTCTTTTCAC  500

seq1  TAGAAATCAAACTACAAAGGCCTGTCTGTCTTGTCAGTATGTATCCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCAAACTACAAAGGCCTGTCTGTCTTGTCAGTATGTATCCAGGG  550

seq1  CCCAGCACAACATCTGTTTGTAGGAGGTACTGGAGGAACGTGTTGATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACAACATCTGTTTGTAGGAGGTACTGGAGGAACGTGTTGATAAA  600

seq1  ATGATGGGTACCCAAGTCTTTCATCTGTACAACTTACCTGGAGACCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGTACCCAAGTCTTTCATCTGTACAACTTACCTGGAGACCAGTG  650

seq1  ACCTTCTCCCACGATTGCCAGATATTTTATTTTAGTCACAGAGTTTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTCCCACGATTGCCAGATATTTTATTTTAGTCACAGAGTTTAGCA  700

seq1  TCTAGCTGTCTAATCCCGTCCTTTACAGAAGTTTTTTGTTTTGTTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTCTAATCCCGTCCTTTACAGAAGTTTTTTGTTTTGTTTTTGT  750

seq1  TTGTTTTG--TTTTTTTTTGTTTGATAAGGATGAGCAAAGTGCTGAGAAT  798
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTTTTTTTTGTTTGATAAGGATGAGCAAAGTGCTGAGAAT  800

seq1  GACTCCAGCTGCTTGGCCTAAGCCCCATCTCCAT-CCCAAGGCACGGGGA  847
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACTCCAGCTGCTTGGCCTAAGCCCCATCTCCATCCCCAAGGCACGGGGA  850

seq1  GTACTGAAGAAGAGAAGGTGAAAAGGA-TGTAAGAGTTAGCACACGGGGA  896
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTACTGAAGAAGAGAAGGTGAAAAGGATTGTAAGAGTTAGCACACGGGGA  900

seq1  G-TAATGCTAGGAACCA-TGAGATGTCTTCCGGACACATTATGG--CTGT  942
      | ||||||||||||||| ||||||||||||||||||||||||||  ||||
seq2  GTTAATGCTAGGAACCATTGAGATGTCTTCCGGACACATTATGGGCCTGT  950

seq1  TGCATGCAT-GAAGTCACAGTGACCG-TGGTTA-TCTAGC-ACACAAGAC  988
      ||||||||| |||||||||||||||| |||||| |||||| |||||||||
seq2  TGCATGCATGGAAGTCACAGTGACCGTTGGTTATTCTAGCAACACAAGAC  1000

seq1  CAG-AACAA-GATCAAG-CCAG-TTAACATTCTAG-CCCAGGTAGGGT-G  1032
      ||| ||||| ||||||| |||| |||||||||||| |||||||||||| |
seq2  CAGAAACAAGGATCAAGCCCAGTTTAACATTCTAGCCCCAGGTAGGGTGG  1050

seq1  AGGATTCCT--GACCCCACTCCTTCGCTGGGAGGTTACAGGCAGCTGA-T  1079
      |||||||||   ||||||||| |||||| ||||||||||||||||||| |
seq2  AGGATTCCTTGAACCCCACTCTTTCGCTTGGAGGTTACAGGCAGCTGATT  1100

seq1  GA--CTTCTGAAGG-AGGGAGAGTCAC  1103
      ||   |||||| || ||||||||||||
seq2  GAACTTTCTGATGGAAGGGAGAGTCAC  1127

seq1: chr18_62426428_62427419
seq2: B6Ng01-199L16.g_66_1062 (reverse)

seq1  AAACAAAACAAAACAAAACAAAACA---AAAAACCCAACTCGTCCAGGAG  47
      |||| |||| |||||||||||| ||   ||||||||||||||||||||||
seq2  AAACCAAAC-AAACAAAACAAAGCAAACAAAAACCCAACTCGTCCAGGAG  49

seq1  CCCTTC-AAGTTGGA-TTTCTGTTACCTCCAATATGTTCAGCAGCAGTCC  95
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAAGTTGGATTTTCTGTTACCTCCAATATGTTCAGCAGCAGTCC  99

seq1  TGTGAATGTGAGCTGCTTCTTGTGTTAGACATTAATCAGACTACATCCTA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTGAGCTGCTTCTTGTGTTAGACATTAATCAGACTACATCCTA  149

seq1  ACAGGA-GCTCATGGAGGCCATAGTGAAACTCTAAAGTCGGGGCAACGAC  194
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGCTCATGGAGGCCATAGTGAAACTCTAAAGTCGGGGCAACGAC  199

seq1  AACAACAGTGACCCAAAATATGCATTGCCTGGCCCTGGCCATTGACACCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTGACCCAAAATATGCATTGCCTGGCCCTGGCCATTGACACCT  249

seq1  TTTAAATGTTTCTTCCTTGTGGAGATAAAGACTGACTTCGAGGCAGAAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTTTCTTCCTTGTGGAGATAAAGACTGACTTCGAGGCAGAAGT  299

seq1  AATAGGAAAGAGGTGGGCAGAAAAATCTCGGACAGTTTTCAGTGCAATGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAGAGGTGGGCAGAAAAATCTCGGACAGTTTTCAGTGCAATGC  349

seq1  AAACAAAATGCCCAGGAGATAACTGGTCGGCTTGCGTTCAGCTAAGGTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATGCCCAGGAGATAACTGGTCGGCTTGCGTTCAGCTAAGGTTA  399

seq1  GTTTTCTTTGCACTCTGGGATTCTGGGGTGAAGAACTCAGGAATCAAGGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTGCACTCTGGGATTCTGGGGTGAAGAACTCAGGAATCAAGGA  449

seq1  GGAGGTAAGTTCACAAAGGCGACTTCGTCTCAGTTGGGGATTTTTTTGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGTTCACAAAGGCGACTTCGTCTCAGTTGGGGATTTTTTTGTT  499

seq1  TGTTTGTTTTTTGTGCTGCCATCCAGAAATAATTAGAAAATTAAACTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTGTGCTGCCATCCAGAAATAATTAGAAAATTAAACTCAA  549

seq1  AGTTGCTGCGTTCCTTTTCATACCACAGCTTAAAAGAACGTCACTGTGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGCGTTCCTTTTCATACCACAGCTTAAAAGAACGTCACTGTGCT  599

seq1  GCCTTTTAAGGGGGTGGGGGGGAAACAGTTAGTATTTGTGGGTTATTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAAGGGGGTGGGGGGGAAACAGTTAGTATTTGTGGGTTATTTGT  649

seq1  GCCTGACTCAGAAAATCTTTCCACTAGCAAAAGGCAGCTCCAGCTCTCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACTCAGAAAATCTTTCCACTAGCAAAAGGCAGCTCCAGCTCTCTT  699

seq1  CTCTCCTCCCACCCACACGCAGCTCTCTCCTGCCTGCATCAGCTGTTATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCCACCCACACGCAGCTCTCTCCTGCCTGCATCAGCTGTTATT  749

seq1  TGCAGAGCACAGGAAGTAGAGCACATACCCTTGGCTTCACTGCTGGTGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCACAGGAAGTAGAGCACATACCCTTGGCTTCACTGCTGGTGTC  799

seq1  TGTTTAAGAGTTTGTGCTTATGTGTGAGGAGATGTCATCTTCCCAGCGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGAGTTTGTGCTTATGTGTGAGGAGATGTCATCTTCCCAGCGAG  849

seq1  GTCTCCTTGCCCTTGTCTTCTCTGATGCTGTCTTAGGGAAACAGTCACTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTGCCCTTGTCTTCTCTGATGCTGTCTTAGGGAAACAGTCACTT  899

seq1  GTTTAAATGCCCGTTCCTCCTGGGGACATAGACCATTGATTAAGAGCAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATGCCCGTTCCTCCTGGGGACATAGACCATTGATTAAGAGCAGA  949

seq1  TTCCAAAGACTCTACTACATGAGTCTCACACTGGAATGAACTGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGACTCTACTACATGAGTCTCACACTGGAATGAACTGAATTC  997