BAC Information

Click to search

BAC

Clone NameB6Ng01-200K21
Chromosome18 (Build37)
Map Location 50,264,126 - 50,265,279
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8
Downstream geneHsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K21.bB6Ng01-200K21.g
ACCGA021674GA021675
length1,154348
definitionB6Ng01-200K21.b B6Ng01-200K21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagacttttccactctgtccatgatgttgtcataaggaagtgttc
tctgtttgccatcatggaggtactagaaggtctttgccatcctctcccac
catgagttgtgcagcatcattctcgttacagaagaggaactggctcctag
acatgcttaagataacacaccttctagctcagtggctcttaaccttcctg
gtgctttgatcctttaacatcctcacgttgtgggtgtagtccataaaagt
attttgttgctagttcatcacttcaatgttgctactgttatgaattctaa
tgtaaatatctgtgttctccagtggtctgaggatacccttgtgaaagggt
tggtcatcccccaaaggagccccatcttaggttgagaactattgctctaa
tacagctggtaagtggtttagctctctggggcttgagtctgcaaccagta
ttaagaaccctaccctttgccacacaccctagtgctcacgaatgggtgga
tggctgatatgtgtctctgttcccagatatgcatttgtacaaggctgtat
ggcttcaaagaagaggccgtcaaaacttagctctgtgtttacttctgtga
tgcttgctcatgagtacaaaagtcagaaagctaacagtcattagctgcaa
caactggcttgctgctgaaagtatgacaactgggatctcttgctactgtg
tccacagctccgatgattagtaagcatacggatgaagagccactaagtgt
ctgtgatggtgtccgatcacagtaagatgggagttctcactttcgttgaa
tagaattgattatagctgttacacataatgcacataagcatttgagtaaa
ataacaaacaataaaaatgaaacaaaacattggaggcagaggcaggagga
tttctgagttcgaggccagtctggtttaacaaagtaagtttcagacagcc
agggctgcacagaagaaaccctgtctcaaaaccatcaaacaaaacaatag
gaacaaacacaaacaaaccagtacttcacatatgggaagaagctcttact
actgttcgtctcactctttactgaaacactgtcaccactgacacttacac
catgaacactaacatcacattactttctgcaatcacctgcagtatacaca
ctgc

tgagctgacatctatggtgtcttagagcctcaatgcccttctggctttta
gagtattcattaagaaatctggtgtacagccgggcatggtggtacacgcc
tttaatcccagcactcgggagacagaggcaggtggatttctgagttagag
gccagcctggcctacgaagtgtttccaggacagccagggctacacagaga
aaaccggtctcaaaacaaaacaaaacaaaaaaacaacaacaaaatcaggt
gtaaaatcaaagaaaacacatggtgaaatttgaggctctagctatatttg
tagcagaggatggcctagtcggtcatcaatgggaggagaggcccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50264126_50265279
seq2: B6Ng01-200K21.b_46_1199

seq1  GAATTCAGACTTTTCCACTCTGTCCATGATGTTGTCATAAGGAAGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTTTTCCACTCTGTCCATGATGTTGTCATAAGGAAGTGTTC  50

seq1  TCTGTTTGCCATCATGGAGGTACTAGAAGGTCTTTGCCATCCTCTCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGCCATCATGGAGGTACTAGAAGGTCTTTGCCATCCTCTCCCAC  100

seq1  CATGAGTTGTGCAGCATCATTCTCGTTACAGAAGAGGAACTGGCTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTGTGCAGCATCATTCTCGTTACAGAAGAGGAACTGGCTCCTAG  150

seq1  ACATGCTTAAGATAACACACCTTCTAGCTCAGTGGCTCTTAACCTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTAAGATAACACACCTTCTAGCTCAGTGGCTCTTAACCTTCCTG  200

seq1  GTGCTTTGATCCTTTAACATCCTCACGTTGTGGGTGTAGTCCATAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTGATCCTTTAACATCCTCACGTTGTGGGTGTAGTCCATAAAAGT  250

seq1  ATTTTGTTGCTAGTTCATCACTTCAATGTTGCTACTGTTATGAATTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGCTAGTTCATCACTTCAATGTTGCTACTGTTATGAATTCTAA  300

seq1  TGTAAATATCTGTGTTCTCCAGTGGTCTGAGGATACCCTTGTGAAAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATCTGTGTTCTCCAGTGGTCTGAGGATACCCTTGTGAAAGGGT  350

seq1  TGGTCATCCCCCAAAGGAGCCCCATCTTAGGTTGAGAACTATTGCTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCCCCCAAAGGAGCCCCATCTTAGGTTGAGAACTATTGCTCTAA  400

seq1  TACAGCTGGTAAGTGGTTTAGCTCTCTGGGGCTTGAGTCTGCAACCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGGTAAGTGGTTTAGCTCTCTGGGGCTTGAGTCTGCAACCAGTA  450

seq1  TTAAGAACCCTACCCTTTGCCACACACCCTAGTGCTCACGAATGGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAACCCTACCCTTTGCCACACACCCTAGTGCTCACGAATGGGTGGA  500

seq1  TGGCTGATATGTGTCTCTGTTCCCAGATATGCATTTGTACAAGGCTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATATGTGTCTCTGTTCCCAGATATGCATTTGTACAAGGCTGTAT  550

seq1  GGCTTCAAAGAAGAGGCCGTCAAAACTTAGCTCTGTGTTTACTTCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAAGAAGAGGCCGTCAAAACTTAGCTCTGTGTTTACTTCTGTGA  600

seq1  TGCTTGCTCATGAGTACAAAAGTCAGAAAGCTAACAGTCATTAGCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCATGAGTACAAAAGTCAGAAAGCTAACAGTCATTAGCTGCAA  650

seq1  CAACTGGCTTGCTGCTGAAAGTATGACAACTGGGATCTCTTGCTACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCTTGCTGCTGAAAGTATGACAACTGGGATCTCTTGCTACTGTG  700

seq1  TCCACAGCTCCGATGATTAGTAAGCATACGGATGAAGAGCCACTAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCTCCGATGATTAGTAAGCATACGGATGAAGAGCCACTAAGTGT  750

seq1  CTGTGATGGTGTCCGATCACAGTAAGATGGGAGTTCTCACTTTCGTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGGTGTCCGATCACAGTAAGATGGGAGTTCTCACTTTCGTTGAA  800

seq1  TAGAATTGATTATAGCTGTTACACATAATGCACATAAGGCATTTGAGTAA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGAATTGATTATAGCTGTTACACATAATGCACATAA-GCATTTGAGTAA  849

seq1  AATAACAAACAATAAAAATG-AACAAAACATTGGGAGGCAGAGGCAGGAG  899
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AATAACAAACAATAAAAATGAAACAAAACATT-GGAGGCAGAGGCAGGAG  898

seq1  GATTTCTGAGTTCGAGGCCAGTCTGGTTT-ACAAAGTAAGTTTCAGGACA  948
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  GATTTCTGAGTTCGAGGCCAGTCTGGTTTAACAAAGTAAGTTTCA-GACA  947

seq1  GCCAGGGCTGCACAG-AGAAACCCTGTCTCAAAA--AACAAACAAAACAA  995
      ||||||||||||||| ||||||||||||||||||  | ||||||||||  
seq2  GCCAGGGCTGCACAGAAGAAACCCTGTCTCAAAACCATCAAACAAAAC--  995

seq1  AAACAAAAAAGAACAAAACAACAAAACAAACCAGTACCTCACATATGGGA  1045
           || | |||| |||||   |||||||||||||| ||||||||||||
seq2  -----AATAGGAAC-AAACA--CAAACAAACCAGTACTTCACATATGGGA  1037

seq1  AG-AGCTC-TACTACTGTCCGTCTTCACCTCCTTTACTG--ACACTGTCA  1091
      || ||||| ||||||||| |||| ||||   ||||||||  |||||||||
seq2  AGAAGCTCTTACTACTGTTCGTC-TCAC--TCTTTACTGAAACACTGTCA  1084

seq1  CCACTGACACTACCACCATG-ACACTACCATCAC--TAC-TTCTGGCATC  1137
      |||||||||||  ||||||| |||||| ||||||  ||| |||||  |||
seq2  CCACTGACACTTACACCATGAACACTAACATCACATTACTTTCTGCAATC  1134

seq1  ACCTGCAGTA---CCACTGC  1154
      ||||||||||    ||||||
seq2  ACCTGCAGTATACACACTGC  1154


| Home | SequenceCutter | Blast | Download |