BAC Information

Click to search

BAC

Clone NameB6Ng01-201P04
Chromosome18 (Build37)
Map Location 49,555,220 - 49,555,752
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201P04.bB6Ng01-201P04.g
ACCGA022577GA022578
length9411,170
definitionB6Ng01-201P04.b B6Ng01-201P04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttatatatgttggatattagtcccctatttgatttaggatagg
taaagatcctttcccaatctgttggtggtctttttgtcttactcacggtg
tcttttgccttgtagaaactttggagttttattaggtcccatttgtcaat
tctcgatcttacagtacaagccattgctgttctgttcaggaatttttccc
ctgtgcccatatcttcaaggcttttccccactttcttctctataagtttc
agtgtctctggttttatgtgaagttccttgatccacttagatttgacctt
agtacaaggagataagtatggatcgattcgcattcttctacatgataaca
accagttgtgccagcaccaattgttgaaaatgctgtctttcttccactgg
atggttttagctcccttgtcgaagatcaagtgaccataggtgtgtgggtt
catttctgggtcttcaattctattccattggtctacttgtctgtctctat
accagtaccatgcagtttttatcacaattgctctgttgtaaagctttagg
tcaggcatgatgattccaccagaggttcttttatccttgagaagagtttt
tcctatcctaggtttttttgttattccagatgaatttgcaaattgctctt
tctaattcgttgaagaattgagttggaattttgatggggattgcattgaa
tctgtagattgcttttggcaagatagccatttttacaatgttgatcctgc
caatccatgagcatgggagatctttccatcttctgagatcttctttaatt
tctttcttcagagatttgaagtttttatcatacagatctttcacttcctt
agttagagtcatgccaagggaatttttattataatttgtggactatgaga
agtgtgttgtttccctaattttctttcctgacctgtttatt

gaattctcctctgaggaaacagacttggaggaggaaacagctcgttatga
gagagaaaagtgccagccagataaaatgcgagctaatcggtcaaggaaga
agccaaaagcggctggcaaaggccagcttgctgcttggcctcttggcagt
cggcttcaaggtcatagtgcacctccaccctatgctgagcccccgccctg
cgtagtgcatcagccctgcgcagagaggcaatggacagagaggcaatgca
cagactcgttcattccaaaggaggaacaaaggaaaatacaacaggcattt
ccggtctttgaaggagccgagggtgggcgtgtccacgctccggtagcgta
tatacagattaaagagcttgccgagtcggtccgtaactatggagtcagtg
ctaatttcactatagcacaagtggaaaggcttgcgaatcacgctatgact
cctggtgattggcagacggtagtaaaagctgtagcccccagtatgggaat
gtatcttgagtggaaagccttgtggcaggactcctgccagacgcaggcaa
gggccaatgccaccatggaaggggatcagagaacgtggacttttgaatta
cttacaggtcagggacaacacgctgctaaccagacaaattatcattgggg
agcatatgctcagatctcagctgctgctgttaaggcatggaaagcactac
ctaagaagggagaggcaagtgggcagttgaccaagattactcaaggtgca
caagagtccttctcagattttgtggccagaatgacagaggcagcagagcg
tatttttggagattcagagcaagccgcacctctggtagaacaactcattt
atgagcaagccacacaggaatgccgagcagccatagccccaagaaagaac
aaaggtttacaagactggctcaggttgtcgggagctgggggacctctcac
caatgcaggcttagcggctgccatccttcaatccaaaatgctccatgggc
agaatgatcggaggacatgttttaactgcagagctggcatctaagaagat
gcagagcttccagataaaccaggggggacctcacctcttggcctagtgtg
caggtatccatagaacgacagttcgcctgtgaggatagccagaatcttcc
ctcacactgatagtcaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49555220_49555752
seq2: B6Ng01-201P04.b_447_984 (reverse)

seq1  AATAAACAGGCTGAGAAAG-AAATTAGGGAAACAACACCCTTCTCAATAG  49
      ||||||||||    ||||| |||||||||||||||||| |||||| ||||
seq2  AATAAACAGGTCAGGAAAGAAAATTAGGGAAACAACACACTTCTC-ATAG  49

seq1  T-CACAA---ATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAGGT  95
      | |||||   |||||| ||| |  |||||| |||||||||||||||| ||
seq2  TCCACAAATTATAATAAAAATTCCCTTGGCATGACTCTAACTAAGGAAGT  99

seq1  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAG  149

seq1  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATC  199

seq1  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  249

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAA  295
      ||||||||||||||||||||||||||||||||||||||| ||| ||||||
seq2  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGAGCAA  299

seq1  TTTGCAAATTTGTCTGGAATAAC-AAAAAACCTAGAATAGCAAAAAGTCT  344
      ||||||||||  ||||||||||| ||||||||||| |||| ||||| |||
seq2  TTTGCAAATTCATCTGGAATAACAAAAAAACCTAGGATAGGAAAAACTCT  349

seq1  TCTCAAGGATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGC  394
      |||||||||||||||||| ||||| ||||||| |||||| ||||||||||
seq2  TCTCAAGGATAAAAGAACCTCTGGTGGAATCATCATGCCTGACCTAAAGC  399

seq1  TTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGAC  444
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGAC  449

seq1  AGACAAGTAGACCAATGGAATAGAATTGAAGATCCAGAAATGAACCCACA  494
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACA  499

seq1  CACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  533
      |||||||||||||||||||||||||||||||||||||||
seq2  CACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAAC  538


| Home | SequenceCutter | Blast | Download |