BAC Information

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BAC

Clone NameB6Ng01-203M16
Chromosome18 (Build37)
Map Location 69,941,805 - 70,087,024
singlet/doubletdoublet
Overlap geneCcdc68
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203M16.bB6Ng01-203M16.g
ACCGA023910GA023911
length8371,175
definitionB6Ng01-203M16.b B6Ng01-203M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,086,191 - 70,087,024)(69,941,805 - 69,942,987)
sequence
gaattcctctctaagttgttgatttggttataaataagagaaacttctat
cagaaagatctattgaaatgtttcagtcaataagtgatcatctaaattgg
atgttcctgtctcagttcaaaattacttggacctacgactttattattct
tcttcttattattattattattattattattttttttttttttttttttt
ttttttagtttttcgagacagggtttctctgtgtagccctggctgtcctg
gaactcactttgtagaccaggctggactcgaactcagaaatcctcctgcc
tctgcctcccaagtgctgggattaaaggcaagcgccaccactgcccggcg
aacctacgactttaaacacatcttggttctcttcaaattcccttttctta
ttggcgattatctgaagtaaacattttaaggctagatttaacttacatta
tttaccattttggcaaaaagtgtggattgcaacccaagtccactgttgaa
acacatttcaaacagccaagctaacacatgctatcatgtggtttcatcca
ggttgtagtccctcttagtcgtgaacggtgcctgtctttttttcagtctc
ttttcagttagaacagaagagcaatttactttgaaaagaacaaattaaga
atctcaacaagcctgcctgggtcttaggacatccagcctctttctgttat
ttctggggttggggaatcaaacagtgcttttccctgcctgaaacaaattc
tttatctcctccccctcccccacacaccccccccccccactgcccctgca
tggagatggagagacaggggtggggggtgaaaggtgg
gaattccacaggaacacaatcattgctctccaaatagaggagagaggatg
tagcgagaggtcaggagtgaagaggcacaggaaacctttgtggtgtcatt
tctgtcccaggacaggatgccggaaggagaggggtcaaagcaacaggaag
tctaggaccacagtacttggccgttactgggtgatggattttcattgttt
cattctttgtggtgagtgctgtgtgatcgcttagcatctgaataactatt
gttctacttccccacccacccccgagtttatttttaatttcaagtgagga
tgaagggttgaacaaagacggggtagtagtgaagctgacgcaatgattgt
tgaaaacaggatccaaaaggctacataagcattgagggatttttgtgtag
gttttatcctaaattcctgggcacctgtgttataaatcagagtgccagac
ttgtggcttttggccctttctgaccctctggttctccagtcttactgagt
catcttccccaggggagcattcgtgatgaacttgtcctactcccctggtg
gtaaccacataaggaaaactcttcaggatgtcaaggggatggagttgaaa
cccctaatatgcctgaggctgccggaagtttccttctccatccattctgt
gatgtttttgctgctcatgggaatcacaaaagaagccctgatttaattct
cttttagaatctaagggacccttgatagcatcacacggggcaactctaaa
aatagacagaggaatgacatatccctttaacaagtggattatgtacagaa
aaattttggtctttatccactggggcaaagggagcttatattcctaaagg
gtcatatgtccctaaacatatgggaacagttgtaagcattccatcagaat
aaagaaagtgcccaccatctcaagtgttctttcagggtggcacaggaact
tacacagtctgaggcttcaaataactatgtgaggttcaggtcttacccac
ctccctttgatctactgctggatttatatgttgtctaatctggacagctt
cttgtctattcttgcctgtccttacatttacaactcttagattacaggaa
tgaaggacaacaggtgcctgaaggcttgtcatgcatctttaaaatgaccg
cacagcttagcaaggtctaaaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70086191_70087024
seq2: B6Ng01-203M16.b_45_881 (reverse)

seq1  CCACC-TTCA-CCCCCACCCCTGTCTCTCCATCTCCATGCAGGGGCAGT-  47
      ||||| |||| |||||||||||||||||||||||||||||||||||||| 
seq2  CCACCTTTCACCCCCCACCCCTGTCTCTCCATCTCCATGCAGGGGCAGTG  50

seq1  GGGGGGGGGGGTGTGTGGGGGAGGGGGAGGAGATAAAGAATTTGTTTCAG  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGTGTGTGGGGGAGGGGGAGGAGATAAAGAATTTGTTTCAG  100

seq1  GCAGGGAAAAGCACTGTTTGATTCCCCAACCCCAGAAATAACAGAAAGAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAAAAGCACTGTTTGATTCCCCAACCCCAGAAATAACAGAAAGAG  150

seq1  GCTGGATGTCCTAAGACCCAGGCAGGCTTGTTGAGATTCTTAATTTGTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGTCCTAAGACCCAGGCAGGCTTGTTGAGATTCTTAATTTGTTC  200

seq1  TTTTCAAAGTAAATTGCTCTTCTGTTCTAACTGAAAAGAGACTGAAAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGTAAATTGCTCTTCTGTTCTAACTGAAAAGAGACTGAAAAAA  250

seq1  AGACAGGCACCGTTCACGACTAAGAGGGACTACAACCTGGATGAAACCAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCACCGTTCACGACTAAGAGGGACTACAACCTGGATGAAACCAC  300

seq1  ATGATAGCATGTGTTAGCTTGGCTGTTTGAAATGTGTTTCAACAGTGGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGCATGTGTTAGCTTGGCTGTTTGAAATGTGTTTCAACAGTGGAC  350

seq1  TTGGGTTGCAATCCACACTTTTTGCCAAAATGGTAAATAATGTAAGTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGCAATCCACACTTTTTGCCAAAATGGTAAATAATGTAAGTTAA  400

seq1  ATCTAGCCTTAAAATGTTTACTTCAGATAATCGCCAATAAGAAAAGGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCTTAAAATGTTTACTTCAGATAATCGCCAATAAGAAAAGGGAA  450

seq1  TTTGAAGAGAACCAAGATGTGTTTAAAGTCGTAGGTTCGCCGGGCAGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAGAACCAAGATGTGTTTAAAGTCGTAGGTTCGCCGGGCAGTGG  500

seq1  TGGCGCTTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGGATTT  550

seq1  CTGAGTTCGAGTCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGTCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  600

seq1  GCTACACAGAGAAACCCTGTCTCGAAAAACTAAAAAAAAAAAAAAAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTCGAAAAACTAAAAAAAAAAAAAAAAAAA  650

seq1  AAAAAAAATAATAATAATAATAATAATAATAAGAAGAAGAATAATAAAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATAATAATAATAATAATAATAATAAGAAGAAGAATAATAAAGT  700

seq1  CGTAGGTCCAAGTAATTTTGAACTGAGACAGGAACATCCAATTTAGATGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTCCAAGTAATTTTGAACTGAGACAGGAACATCCAATTTAGATGA  750

seq1  TCACTTATTGACTGAAACATTTCAATAGATCTTTCTGATAGAAGTTTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTATTGACTGAAACATTTCAATAGATCTTTCTGATAGAAGTTTCTC  800

seq1  TTATTTATAACCAAATCAACAACTTAGAGAGGAATTC  834
      |||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAACCAAATCAACAACTTAGAGAGGAATTC  837

seq1: chr18_69941805_69942987
seq2: B6Ng01-203M16.g_67_1241

seq1  GAATTCCACAGGAACACAATCATTGCTCTCCAAATAGAGGAGAGAGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGAACACAATCATTGCTCTCCAAATAGAGGAGAGAGGATG  50

seq1  TAGCGAGAGGTCAGGAGTGAAGAGGCACAGGAAACCTTTGTGGTGTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGAGGTCAGGAGTGAAGAGGCACAGGAAACCTTTGTGGTGTCATT  100

seq1  TCTGTCCCAGGACAGGATGCCGGAAGGAGAGGGGTCAAAGCAACAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCAGGACAGGATGCCGGAAGGAGAGGGGTCAAAGCAACAGGAAG  150

seq1  TCTAGGACCACAGTACTTGGCCGTTACTGGGTGATGGATTTTCATTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACCACAGTACTTGGCCGTTACTGGGTGATGGATTTTCATTGTTT  200

seq1  CATTCTTTGTGGTGAGTGCTGTGTGATCGCTTAGCATCTGAATAACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTGTGGTGAGTGCTGTGTGATCGCTTAGCATCTGAATAACTATT  250

seq1  GTTCTACTTCCCCACCCACCCCCGAGTTTATTTTTAATTTCAAGTGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTTCCCCACCCACCCCCGAGTTTATTTTTAATTTCAAGTGAGGA  300

seq1  TGAAGGGTTGAACAAAGACGGGGTAGTAGTGAAGCTGACGCAATGATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTTGAACAAAGACGGGGTAGTAGTGAAGCTGACGCAATGATTGT  350

seq1  TGAAAACAGGATCCAAAAGGCTACATAAGCATTGAGGGATTTTTGTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGGATCCAAAAGGCTACATAAGCATTGAGGGATTTTTGTGTAG  400

seq1  GTTTTATCCTAAATTCCTGGGCACCTGTGTTATAAATCAGAGTGCCAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATCCTAAATTCCTGGGCACCTGTGTTATAAATCAGAGTGCCAGAC  450

seq1  TTGTGGCTTTTGGCCCTTTCTGACCCTCTGGTTCTCCAGTCTTACTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTTTGGCCCTTTCTGACCCTCTGGTTCTCCAGTCTTACTGAGT  500

seq1  CATCTTCCCCAGGGGAGCATTCGTGATGAACTTGTCCTACTCCCCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCCCAGGGGAGCATTCGTGATGAACTTGTCCTACTCCCCTGGTG  550

seq1  GTAACCACATAAGGAAAACTCTTCAGGATGTCAAGGGGATGGAGTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACATAAGGAAAACTCTTCAGGATGTCAAGGGGATGGAGTTGAAA  600

seq1  CCCCTAATATGCCTGAGGCTGCCGGAAGTTTCCTTCTCCATCCATTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATATGCCTGAGGCTGCCGGAAGTTTCCTTCTCCATCCATTCTGT  650

seq1  GATGTTTTTGCTGCTCATGGGAATCACAAAAGAAGCCCTGATTTAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTTGCTGCTCATGGGAATCACAAAAGAAGCCCTGATTTAATTCT  700

seq1  CTTTTAGAATCTAAGGGACCCTTGATAGCATCACACGGGGCAACTCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAATCTAAGGGACCCTTGATAGCATCACACGGGGCAACTCTAAA  750

seq1  AATAGACAGAGGAATGACATATCCCTTTAACAAGTGGATTATGTACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAGAGGAATGACATATCCCTTTAACAAGTGGATTATGTACAGAA  800

seq1  AAATTTTGGTCTTTATCCACTGGGGCAAAGGGAGCTTATATTCCT-AAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATTTTGGTCTTTATCCACTGGGGCAAAGGGAGCTTATATTCCTAAAGG  850

seq1  GTCATATGTCCCTAAACATAT-GGAACAGTTTGTAAGCATTCCATCAGAA  898
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  GTCATATGTCCCTAAACATATGGGAACAG-TTGTAAGCATTCCATCAGAA  899

seq1  TAAAGAAAGTGCCCACCATCTCAAAGTGTTCTTTCAGGGTGGCACAGGAA  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAGAAAGTGCCCACCATCTC-AAGTGTTCTTTCAGGGTGGCACAGGAA  948

seq1  CTTACACAGTCTGAGGCTTCAAATAACCTATGTGAGGTTCAGGTCTTACC  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTACACAGTCTGAGGCTTCAAATAA-CTATGTGAGGTTCAGGTCTTACC  997

seq1  CACCTCCCTTTGATCTTACTGCTGGGATTTATAATGTTGTCTAATCTGGG  1048
      ||||||||||||||| ||||||| |||||||| |||||||||||||||| 
seq2  CACCTCCCTTTGATC-TACTGCT-GGATTTAT-ATGTTGTCTAATCTGG-  1043

seq1  AACAGCTTTCTGTCTATTCTTGCCTGTCCTTACATTTTACCAACTCTTTA  1098
       |||||||  |||||||||||||||||||||||||||   |||||| |||
seq2  -ACAGCTTCTTGTCTATTCTTGCCTGTCCTTACATTT--ACAACTC-TTA  1089

seq1  GAATTACAGG-ATGACAGGGACAACAGGTGGCTG-AGGC-TGTCATGCCA  1145
      | |||||||| |||  | |||||||||||| ||| |||| ||||||| ||
seq2  G-ATTACAGGAATG--AAGGACAACAGGTGCCTGAAGGCTTGTCATG-CA  1135

seq1  TC-ATAAAATGCACGCACAGGTAAGCAAGCTC-AAAACTG  1183
      ||  |||||||  ||||||| | |||||| || |||||||
seq2  TCTTTAAAATGACCGCACAGCTTAGCAAGGTCTAAAACTG  1175