BAC Information

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BAC

Clone NameB6Ng01-207A04
Chromosome18 (Build37)
Map Location 34,909,996 - 35,064,989
singlet/doubletdoublet
Overlap geneCdc25c, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1
Upstream geneLOC100041258, Epb4.1l4a, EG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, LOC100041859
Downstream geneHspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207A04.bB6Ng01-207A04.g
ACCGA026275GA026276
length1,114528
definitionB6Ng01-207A04.b B6Ng01-207A04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,909,996 - 34,911,103)(35,064,459 - 35,064,989)
sequence
gaattcaacaggagcccatgctggccttgaacctgttgatcatccttgtc
tcagcctccaccaagtcctatttagaaaaatgttctttggttgtttttta
catagaaaggatgcccaagacttaagagtcataaagttcaagatcatagt
tgagactcaaactctggaccttgaaacaggataactcagcaaacaaactt
gttcataaaaatcaaagataaggcgtaaaaataaaaattaatttacagac
aggagagatggctcagtgattaagaacttgctgctcttatagaagactgc
actcgggttactacccacccaactcccactttaggtagctcacaaccact
cccaccccccaaattaacaataaatgttgtttaaaaataaatttaccccg
acagaatgcttaggtttgccgagtcgtggagtttgtctttcggagattca
gggaaatctgaacggatggtaaaagaagtgtttctctccaaaagtaggtg
taatatcttcctttgtttggacctaaaactgggtgctgaaacaaaacttc
cctcttcacttgcaggtgggataggtcctgtagacatgacttcagagtct
tcaccgagggaggtggggctatctaggagaagaacactccagatattcaa
caactccagtctctccaccctttccagtgcccggctgagcccgggtggag
gagcatcccggtaggatgaagggtttaacctcttggaatgttacattgca
gttgctcagggcgaaaacttacagacgtcaggcaagctcaggacttcaaa
ggtggaacgaagagaacacttggcttgatccggaccacgcagtttcacac
tccttgaccagaagaaaccgatctatcaaacaagatgaggctatacggat
ctcgggtcccgaacgaaccctgcagggacattcgggtatcctagattccg
ggatggacacagttctcggcttacctaagtttaaaggccggactttgaat
ttttgtgaagaattaaaaaacaaaaaataaccaaaaaaaatacaaaaaac
ctctctgtgcagactggacgtttagcgatgactccctcgactgacaggga
tctgaggaacgaag
actgagttttctccccttccctttgtgggttttttcttggggggtgggag
gctagcctggggttgagtgtgccacccaaactggcctccaacactggcag
ttcttgtgccttggcttcctgggtactaaggtttatagttgtgagctacc
attcctggggctgatttttacaactataattctggagtagggtgggcttc
tcctgtaagagcagcccctttctgctttaagacttatttattctgctttg
tttctccaggtatcttgcggtaccgagtagatttccagggaatggagtac
caaggaggagatgatgaattttttgaccttgatgactactaggtagtcga
catgggtccggcaaccgtgcctcaccctccagcattcaacccaaggagca
tacccgtggtggagtccaacagatccctgccttacaattggagcatttcc
agaacttaatccgatgagcattggatactgaaaagaaaagtgaaaataaa
atcatgacccaaccctacactttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_34909996_34911103
seq2: B6Ng01-207A04.b_47_1160

seq1  GAATTCAACAGGAGCCCATGCTGGCCTTGAACCTGTTGATCATCCTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGGAGCCCATGCTGGCCTTGAACCTGTTGATCATCCTTGTC  50

seq1  TCAGCCTCCACCAAGTCCTATTTAGAAAAATGTTCTTTGGTTGTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCACCAAGTCCTATTTAGAAAAATGTTCTTTGGTTGTTTTTTA  100

seq1  CATAGAAAGGATGCCCAAGACTTAAGAGTCATAAAGTTCAAGATCATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAAGGATGCCCAAGACTTAAGAGTCATAAAGTTCAAGATCATAGT  150

seq1  TGAGACTCAAACTCTGGACCTTGAAACAGGATAACTCAGCAAACAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCAAACTCTGGACCTTGAAACAGGATAACTCAGCAAACAAACTT  200

seq1  GTTCATAAAAATCAAAGATAAGGCGTAAAAATAAAAATTAATTTACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAAAAATCAAAGATAAGGCGTAAAAATAAAAATTAATTTACAGAC  250

seq1  AGGAGAGATGGCTCAGTGATTAAGAACTTGCTGCTCTTATAGAAGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATGGCTCAGTGATTAAGAACTTGCTGCTCTTATAGAAGACTGC  300

seq1  ACTCGGGTTACTACCCACCCAACTCCCACTTTAGGTAGCTCACAACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGTTACTACCCACCCAACTCCCACTTTAGGTAGCTCACAACCACT  350

seq1  CCCACCCCCCAAATTAACAATAAATGTTGTTTAAAAATAAATTTACCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCCAAATTAACAATAAATGTTGTTTAAAAATAAATTTACCCCG  400

seq1  ACAGAATGCTTAGGTTTGCCGAGTCGTGGAGTTTGTCTTTCGGAGATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGCTTAGGTTTGCCGAGTCGTGGAGTTTGTCTTTCGGAGATTCA  450

seq1  GGGAAATCTGAACGGATGGTAAAAGAAGTGTTTCTCTCCAAAAGTAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTGAACGGATGGTAAAAGAAGTGTTTCTCTCCAAAAGTAGGTG  500

seq1  TAATATCTTCCTTTGTTTGGACCTAAAACTGGGTGCTGAAACAAAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTTCCTTTGTTTGGACCTAAAACTGGGTGCTGAAACAAAACTTC  550

seq1  CCTCTTCACTTGCAGGTGGGATAGGTCCTGTAGACATGACTTCAGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCACTTGCAGGTGGGATAGGTCCTGTAGACATGACTTCAGAGTCT  600

seq1  TCACCGAGGGAGGTGGGGCTATCTAGGAGAAGAACACTCCAGATATTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGAGGGAGGTGGGGCTATCTAGGAGAAGAACACTCCAGATATTCAA  650

seq1  CAACTCCAGTCTCTCCACCCTTTCCAGTGCCCGGCTGAGCCCGGGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCAGTCTCTCCACCCTTTCCAGTGCCCGGCTGAGCCCGGGTGGAG  700

seq1  GAGCATCCCGGTAGGATGAAGGGTTTAACCTCTTGGAATGTTACATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCCCGGTAGGATGAAGGGTTTAACCTCTTGGAATGTTACATTGCA  750

seq1  GTTGCTCAGGGCGAAAACTTACAGACGTCAGGCAAGCTCAGGACTTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCAGGGCGAAAACTTACAGACGTCAGGCAAGCTCAGGACTTCAAA  800

seq1  GGTGGAACGAAGAGAACAC-TGGCTTGATCCGGACCACGCAGTTTCACAC  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTGGAACGAAGAGAACACTTGGCTTGATCCGGACCACGCAGTTTCACAC  850

seq1  T-CTTGACCAGAAGAAACCGATCTAACAAACAAGATGAGGCTATACGGAT  898
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCTTGACCAGAAGAAACCGATCTATCAAACAAGATGAGGCTATACGGAT  900

seq1  CTCGGGTCCCGAACGAACCCTGCAGGGACAATCGGGTATCCTAGATTCCG  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCGGGTCCCGAACGAACCCTGCAGGGACATTCGGGTATCCTAGATTCCG  950

seq1  GGATGGACACAGTTCCCGGCTTACCTTAAGTTTAAAGGCC-GAC-TTGAA  996
      ||||||||||||||| ||||||||| |||||||||||||| ||| |||||
seq2  GGATGGACACAGTTCTCGGCTTACC-TAAGTTTAAAGGCCGGACTTTGAA  999

seq1  -TTTTGTG-AGATTAAAAAAACAAAAAAAAAACAAAAAAAAAACAAAAAA  1044
       ||||||| ||| | ||||||||||||| || ||||||||| ||||||||
seq2  TTTTTGTGAAGAATTAAAAAACAAAAAATAACCAAAAAAAATACAAAAAA  1049

seq1  CCTC---CTGCAGGACTGGACG-TAAGCGAAGACTCCACAGAATGACAAG  1090
      ||||    |||| ||||||||| | ||||| ||||||   || |||| ||
seq2  CCTCTCTGTGCA-GACTGGACGTTTAGCGATGACTCCCTCGACTGAC-AG  1097

seq1  GGATCTGAGGAACAGAAG  1108
      ||||||||||||| ||||
seq2  GGATCTGAGGAAC-GAAG  1114

seq1: chr18_35064459_35064989
seq2: B6Ng01-207A04.g_66_599 (reverse)

seq1  AAACCAAAGTGTAGGGTTGGGTC-TGGTTTT-GTTTCACTTTTCTTTTCA  48
      ||||||||||||||||||||||| || ||||  |||||||||||||||||
seq2  AAACCAAAGTGTAGGGTTGGGTCATGATTTTATTTTCACTTTTCTTTTCA  50

seq1  GTATCCAATGCTCA-CGGATTAAGTTCTGGAAATGCTCCAATTGTAAGGC  97
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATCCAATGCTCATCGGATTAAGTTCTGGAAATGCTCCAATTGTAAGGC  100

seq1  AGGGATCTGTTGGACTCCACCACGGGTATGCTCCTTGGGTTGAATGCTGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTGTTGGACTCCACCACGGGTATGCTCCTTGGGTTGAATGCTGG  150

seq1  AGGGTGAGGCACGGTTGCCGGACCCATGTCGACTACCTAGTAGTCATCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGCACGGTTGCCGGACCCATGTCGACTACCTAGTAGTCATCAA  200

seq1  GGTCAAAAAATTCATCATCTCCTCCTTGGTACTCCATTCCCTGGAAATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAAATTCATCATCTCCTCCTTGGTACTCCATTCCCTGGAAATCT  250

seq1  ACTCGGTACCGCAAGATACCTGGAGAAACAAAGCAGAATAAATAAGTCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGTACCGCAAGATACCTGGAGAAACAAAGCAGAATAAATAAGTCTT  300

seq1  AAAGCAGAAAGGGGCTGCTCTTACAGGAGAAGCCCACCCTACTCCAGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAAAGGGGCTGCTCTTACAGGAGAAGCCCACCCTACTCCAGAAT  350

seq1  TATAGTTGTAAAAATCAGCCCCAGGAATGGTAGCTCACAACTATAAACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGTAAAAATCAGCCCCAGGAATGGTAGCTCACAACTATAAACCT  400

seq1  TAGTACCCAGGAAGCCAAGGCACAAGAACTGCCAGTGTTGGAGGCCAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCCAGGAAGCCAAGGCACAAGAACTGCCAGTGTTGGAGGCCAGTT  450

seq1  TGGGTGGCACACTCAACCCCAGGCTAGCCTCCCACCCCCCAAGAAAAAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCACACTCAACCCCAGGCTAGCCTCCCACCCCCCAAGAAAAAAC  500

seq1  CCACAAAGGGAAGGGGAGAAAACTCAGTGAATTC  531
      ||||||||||||||||||||||||||||||||||
seq2  CCACAAAGGGAAGGGGAGAAAACTCAGTGAATTC  534