BAC Information

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BAC

Clone NameB6Ng01-208B22
Chromosome18 (Build37)
Map Location 87,204,182 - 87,294,392
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B22.bB6Ng01-208B22.g
ACCGA027084GA027085
length1,0081,089
definitionB6Ng01-208B22.b B6Ng01-208B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,204,182 - 87,205,161)(87,293,286 - 87,294,392)
sequence
gaattcttcaggtctttgagaagcatgtttctaacttttacattagtctc
tgaaaagtacgttatcatggatcaaaagttcatatccactaataattcag
tatgaagtactgaatgcagcaactaattttatatttagagcttaagctgc
caggagcaacagaatgcaaattaaagccattttttcatgcttactctgta
tcatgaagaagacaagtagttactgcattcggagccaagggctattgtgc
ttttaggggtgaagttcactggtgcattttttacgatatagcattttctg
agtaattatttaaatttaaacactgcattcccttaaaaatgtagatgtgc
tgtatcaaaaaatgctatcaaagtcatccgaggttataaacctaagtggt
tactaagcctggtgttctgctaaaggttgattcagagttatttgtcattg
gaactttggggggaaaagataatcctgtcatgtttgttatggattgaatg
tggaatgtctcccaataaattctcacgtttaacactttatcctcagttgc
tggaggctattttgaaatttttttgacccatcaggagaagcagcctaatg
ggaagaaatagttcactagaaggaaatcctttattttgcatttccctata
gctagattcttctttttcagtttcctgatcacagcaaattaaaataacca
gtgtatcataggcttgcacctccctgatgtttttgctgagtcacaagtga
catgtagactgatgtctctgaaactctgagtgagcaatctttcctctaat
ttttttcttctttttttttaattaggtatttttcttcatttacatttcca
atgctatcccaaaagtcccccacaccctcctccctaatccccccacccac
acactcctacttcttggccctggcgttcccctgtactgaggcatataagt
ctgcaagaccaatgggcctctctttccactgatggtcatcttctgataca
aatgcagc

gaattcaatacatgagtatgtggtgaagacttcatactcaagctgaaact
acttcctttagcttttcctgttaattccttaacatgctctctaaaggaaa
cgagaaaagaaataaaaggtttaatggtgtttttgtcctcagaaaatcca
caacacgatttggggtgcagtgattgcttcatgagtatttattgaattac
aaaatggattaaggagtgcttgtatatattaatcttgatttgttagacaa
cacatattttaagacacatataaaaaaacataaatatctagaccaaaaca
gaaactgttgaaggcttgacaaaatgtaagccaataatgaaataatgatt
acctataaaaatagggggtgaaatgttttctgattgtgttaaaagctgaa
caagttaatctgttaaacacctgcagaaaatgcttcatccaaaagacatg
cgaattgactatataatattagtcagcaagagtgcgaaatggtggaatac
ctgtactactgcctgtcctacattttctgtcacctgaggatagtacataa
aaacttttcagaattagagaatgattaaatgtgagcatatatttagtgaa
gaattttaaaaatttagaaacatgatttaggtattcggtctctggacata
cagaacacatggatacagtcatatactcacaatgatatagccacagaatt
gtgccagaaatgtaagcataagataatatctgtagaaattttagaatatt
tatcagtttataatgttaaagagaaatagtatatttaaataaaagttata
ttcccttttgtccgctctcactcacccctttcccattcaaacagcccact
ccagttttttctcatctctctataaaaactatactttttcttccttgggc
aatcctctccttccctttagacccttccgagatttctaaccttcagtggt
tatacatattagaacatgcatataagacttaaaggttaatgtccacatgt
agacatatgtgccggcagtggtggcacatgcttatccacacatgcaagca
gagcagtgatttctgagtcaagccagctgtctacgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87204182_87205161
seq2: B6Ng01-208B22.b_48_1027

seq1  GAATTCTTCAGGTCTTTGAGAAGCATGTTTCTAACTTTTACATTAGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGGTCTTTGAGAAGCATGTTTCTAACTTTTACATTAGTCTC  50

seq1  TGAAAAGTACGTTATCATGGATCAAAAGTTCATATCCACTAATAATTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTACGTTATCATGGATCAAAAGTTCATATCCACTAATAATTCAG  100

seq1  TATGAAGTACTGAATGCAGCAACTAATTTTATATTTAGAGCTTAAGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTACTGAATGCAGCAACTAATTTTATATTTAGAGCTTAAGCTGC  150

seq1  CAGGAGCAACAGAATGCAAATTAAAGCCATTTTTTCATGCTTACTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAACAGAATGCAAATTAAAGCCATTTTTTCATGCTTACTCTGTA  200

seq1  TCATGAAGAAGACAAGTAGTTACTGCATTCGGAGCCAAGGGCTATTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAAGACAAGTAGTTACTGCATTCGGAGCCAAGGGCTATTGTGC  250

seq1  TTTTAGGGGTGAAGTTCACTGGTGCATTTTTTACGATATAGCATTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGGTGAAGTTCACTGGTGCATTTTTTACGATATAGCATTTTCTG  300

seq1  AGTAATTATTTAAATTTAAACACTGCATTCCCTTAAAAATGTAGATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTATTTAAATTTAAACACTGCATTCCCTTAAAAATGTAGATGTGC  350

seq1  TGTATCAAAAAATGCTATCAAAGTCATCCGAGGTTATAAACCTAAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAAAAAATGCTATCAAAGTCATCCGAGGTTATAAACCTAAGTGGT  400

seq1  TACTAAGCCTGGTGTTCTGCTAAAGGTTGATTCAGAGTTATTTGTCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGCCTGGTGTTCTGCTAAAGGTTGATTCAGAGTTATTTGTCATTG  450

seq1  GAACTTTGGGGGGAAAAGATAATCCTGTCATGTTTGTTATGGATTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGGGGGGAAAAGATAATCCTGTCATGTTTGTTATGGATTGAATG  500

seq1  TGGAATGTCTCCCAATAAATTCTCACGTTTAACACTTTATCCTCAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTCTCCCAATAAATTCTCACGTTTAACACTTTATCCTCAGTTGC  550

seq1  TGGAGGCTATTTTGAAATTTTTTTGACCCATCAGGAGAAGCAGCCTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCTATTTTGAAATTTTTTTGACCCATCAGGAGAAGCAGCCTAATG  600

seq1  GGAAGAAATAGTTCACTAGAAGGAAATCCTTTATTTTGCATTTCCCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATAGTTCACTAGAAGGAAATCCTTTATTTTGCATTTCCCTATA  650

seq1  GCTAGATTCTTCTTTTTCAGTTTCCTGATCACAGCAAATTAAAATAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTCTTCTTTTTCAGTTTCCTGATCACAGCAAATTAAAATAACCA  700

seq1  GTGTATCATAGGCTTGCACCTCCCTGATGTTTTTGCTGAGTCACAAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCATAGGCTTGCACCTCCCTGATGTTTTTGCTGAGTCACAAGTGA  750

seq1  CATGTAGACTGATGTCTCTGAAACTCTGAGTGAGCAATCTTTCCTCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACTGATGTCTCTGAAACTCTGAGTGAGCAATCTTTCCTCTAAT  800

seq1  TTTTTTCTTCTTTTTTTTTAATTAGGTA-TTTTCTTCATTTACATTTCCA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTTTCTTCTTTTTTTTTAATTAGGTATTTTTCTTCATTTACATTTCCA  850

seq1  ATGCTATCCCAAAAGTCCCCCACACCCTCCTCCCTAATCCCCCCACCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCAAAAGTCCCCCACACCCTCCTCCCTAATCCCCCCACCCAC  900

seq1  ACACTCCTACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAG  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACTCCTACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATAT-AAG  949

seq1  TCTGCAAGACCAATGGGCCTCTCTTTCCACT  980
      |||||||||||||||||||||||||||||||
seq2  TCTGCAAGACCAATGGGCCTCTCTTTCCACT  980


seq1: chr18_87293286_87294392
seq2: B6Ng01-208B22.g_63_1151 (reverse)

seq1  TACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGC  50
      ||||| ||||||   ||||| |||| |||||||||||   ||| ||||||
seq2  TACTC-GTAGAC--AGCTGG-CTTG-ACTCAGAAATC--ACTG-CTCTGC  42

seq1  TTTGCATGTGTTGGGATTAAAGGCATGTGCCACCACTGCCCGGCACATAT  100
       ||||||||||  ||||   | |||||||||||||||| |||||||||| 
seq2  -TTGCATGTGT--GGAT---AAGCATGTGCCACCACTG-CCGGCACATA-  84

seq1  TGTCTTACATGTGGACATTAACCTTTAAGTCTTTATTATGCATGTTCTAA  150
      |||| ||||||||||||||||||||||||||||   ||||||||||||||
seq2  TGTC-TACATGTGGACATTAACCTTTAAGTCTT--ATATGCATGTTCTAA  131

seq1  TATGTATAACCACTG-AGGTTAGAAATCTCGGAAGGGTCTAAAGGGAAGG  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATGTATAACCACTGAAGGTTAGAAATCTCGGAAGGGTCTAAAGGGAAGG  181

seq1  AGAGGATTGCCCAAGGAAGAAAAAGTATAGTTTTTATAGAGAGATGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTGCCCAAGGAAGAAAAAGTATAGTTTTTATAGAGAGATGAGAA  231

seq1  AAAACTGGAGTGGGCTGTTTGAATGGGAAAGGGGTGAGTGAGAGCGGACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGTGGGCTGTTTGAATGGGAAAGGGGTGAGTGAGAGCGGACA  281

seq1  AAAGGGAATATAACTTTTATTTAAATATACTATTTCTCTTTAACATTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATATAACTTTTATTTAAATATACTATTTCTCTTTAACATTATA  331

seq1  AACTGATAAATATTCTAAAATTTCTACAGATATTATCTTATGCTTACATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAAATATTCTAAAATTTCTACAGATATTATCTTATGCTTACATT  381

seq1  TCTGGCACAATTCTGTGGCTATATCATTGTGAGTATATGACTGTATCCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCACAATTCTGTGGCTATATCATTGTGAGTATATGACTGTATCCAT  431

seq1  GTGTTCTGTATGTCCAGAGACCGAATACCTAAATCATGTTTCTAAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTATGTCCAGAGACCGAATACCTAAATCATGTTTCTAAATTTT  481

seq1  TAAAATTCTTCACTAAATATATGCTCACATTTAATCATTCTCTAATTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCTTCACTAAATATATGCTCACATTTAATCATTCTCTAATTCTG  531

seq1  AAAAGTTTTTATGTACTATCCTCAGGTGACAGAAAATGTAGGACAGGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTTATGTACTATCCTCAGGTGACAGAAAATGTAGGACAGGCAG  581

seq1  TAGTACAGGTATTCCACCATTTCGCACTCTTGCTGACTAATATTATATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGGTATTCCACCATTTCGCACTCTTGCTGACTAATATTATATAG  631

seq1  TCAATTCGCATGTCTTTTGGATGAAGCATTTTCTGCAGGTGTTTAACAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCGCATGTCTTTTGGATGAAGCATTTTCTGCAGGTGTTTAACAGA  681

seq1  TTAACTTGTTCAGCTTTTAACACAATCAGAAAACATTTCACCCCCTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGTTCAGCTTTTAACACAATCAGAAAACATTTCACCCCCTATTT  731

seq1  TTATAGGTAATCATTATTTCATTATTGGCTTACATTTTGTCAAGCCTTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGTAATCATTATTTCATTATTGGCTTACATTTTGTCAAGCCTTCA  781

seq1  ACAGTTTCTGTTTTGGTCTAGATATTTATGTTTTTTTATATGTGTCTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTGTTTTGGTCTAGATATTTATGTTTTTTTATATGTGTCTTAA  831

seq1  AATATGTGTTGTCTAACAAATCAAGATTAATATATACAAGCACTCCTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGTTGTCTAACAAATCAAGATTAATATATACAAGCACTCCTTAA  881

seq1  TCCATTTTGTAATTCAATAAATACTCATGAAGCAATCACTGCACCCCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTGTAATTCAATAAATACTCATGAAGCAATCACTGCACCCCAAA  931

seq1  TCGTGTTGTGGATTTTCTGAGGACAAAAACACCATTAAACCTTTTATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTTGTGGATTTTCTGAGGACAAAAACACCATTAAACCTTTTATTTC  981

seq1  TTTTCTCGTTTCCTTTAGAGAGCATGTTAAGGAATTAACAGGAAAAGCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGTTTCCTTTAGAGAGCATGTTAAGGAATTAACAGGAAAAGCTA  1031

seq1  AAGGAAGTAGTTTCAGCTTGAGTATGAAGTCTTCACCACATACTCATGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTAGTTTCAGCTTGAGTATGAAGTCTTCACCACATACTCATGTA  1081

seq1  TTGAATTC  1107
      ||||||||
seq2  TTGAATTC  1089


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