BAC Information

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BAC

Clone NameB6Ng01-208G04
Chromosome18 (Build37)
Map Location 3,828,334 - 4,034,016
singlet/doubletdoublet
Overlap geneLOC435549, EG664867
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273
Downstream geneLOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208G04.bB6Ng01-208G04.g
ACCGA027282GA027283
length1571,143
definitionB6Ng01-208G04.b B6Ng01-208G04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,828,334 - 3,828,490)(4,032,896 - 4,034,016)
sequence
caatgaggctgaagagccaggaggtaagaagtactgttgtttgtcagttc
ttttctcctgtgttgtaagacacatagtcttttggaagccatttaaattt
gtccagatgatttcggaacaaggcaaaagagtattagagaggggtgtggg
agggatg
gaattcatagaatttttgcttggagcgaatttcctgatgaacagtgttgg
tgccccctatatttttcagggtggcattttgtgagtatatacttctgcac
acaaggtggggaagttgtactcccttcactctgtgcctgccatgcaaaat
acagtgggtgaatgggaaaagaaggctgtttggttacctctgggatgtca
aagttccttctggatcaagtcaaactgccagtgattgctctgcagtctaa
tatttttgcttctttggagattaatataagaagtcctggggagctgtttc
ccactactgtactctgatagtcccatcccttcatggatgaagttgtgtct
gctttattactgagtgggtggagatgaacgggtataatgtacagcccaga
tctttcctgttgaagtggagctgtctgaagaaagtaggcattagacattg
tccctgtgggtgtctcacaagagcaagttgccaaagatagaggttcatgg
tggttagcgtcaccatgacagtgaagattgaattctcagggtctggcatt
cattatttagaagccaactcttatatgggtacataaaacacattattaat
tcctagcttagtattggcttctctgactctgtcctttgagtcagaatcca
gtggttagtccatagaatttctggcatcagaagcttggtctccatctccc
actgggattgaagactcaaacaaccaaacttgggtttgaacgagttctag
aggttggaactcaggtcctcttgtttttgtggggaagcattttatatatt
gaaccaattccccagcctgaaatttaattttcttttttattgtcaaaata
gagagtcttgggaattgactccctcaactgacataattcaaaatttccat
ttgtgatatgaaagaaaacagaagaaaacacttcacttcataaacttaat
aaaaaaagaacattacttattcctggttgtgatgggcacacacaacctgt
agtctcttgcaatggggggagttagaggcagggtgataagagggtttgaa
gcagcctgaaacaccagttagaagacttgagtcttaagcaacaccaacaa
aatctttccattgcctggagatgtgaactgtgagtctaagccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3828334_3828490
seq2: B6Ng01-208G04.b_51_207

seq1  CAATGAGGCTGAAGAGCCAGGAGGTAAGAAGTACTGTTGTTTGTCAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGCTGAAGAGCCAGGAGGTAAGAAGTACTGTTGTTTGTCAGTTC  50

seq1  TTTTCTCCTGTGTTGTAAGACACATAGTCTTTTGGAAGCCATTTAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTGTGTTGTAAGACACATAGTCTTTTGGAAGCCATTTAAATTT  100

seq1  GTCCAGATGATTTCGGAACAAGGCAAAAGAGTATTAGAGAGGGGTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATGATTTCGGAACAAGGCAAAAGAGTATTAGAGAGGGGTGTGGG  150

seq1  AGGGATG  157
      |||||||
seq2  AGGGATG  157

seq1: chr18_4032896_4034016
seq2: B6Ng01-208G04.g_66_1208 (reverse)

seq1  GGGCT--GACT--CAGCTCACATCTCCA-GCATTAG-AAGATTTTGTTTG  44
      |||||  ||||  ||| ||||||||||| ||| | | ||||||||||| |
seq2  GGGCTTAGACTCACAGTTCACATCTCCAGGCAATGGAAAGATTTTGTTGG  50

seq1  TGTTGCCTTAAGACTC-AGTC-TCTAACTGTTG-TTCAGGCTGGCCTCAA  91
      ||||| |||||||||| |||| |||||||| || |||||||| || ||||
seq2  TGTTG-CTTAAGACTCAAGTCTTCTAACTGGTGTTTCAGGCT-GCTTCAA  98

seq1  ACCCTC-TATCACCCTGCCTCTACCTCCCCCCA-TGC-AGAGACTACAG-  137
      |||||| |||||||||||||||| ||||||||| ||| ||||||||||| 
seq2  ACCCTCTTATCACCCTGCCTCTAACTCCCCCCATTGCAAGAGACTACAGG  148

seq1  --GTGTGTGCCCATCACAA-CAGG-ATAAGT-ATGTTC-TTTTTTATTAA  181
        ||||||||||||||||| |||| |||||| |||||| |||||||||||
seq2  TTGTGTGTGCCCATCACAACCAGGAATAAGTAATGTTCTTTTTTTATTAA  198

seq1  GTTTATGAAGTG-AGTGTTTTCTTCTG-TTTCTTTCATATCAC-AATGG-  227
      |||||||||||| |||||||||||||| ||||||||||||||| ||||| 
seq2  GTTTATGAAGTGAAGTGTTTTCTTCTGTTTTCTTTCATATCACAAATGGA  248

seq1  AATTTTGAATTATGGTCAGTTGAGGGAGTCAATTCCCAAGACTCTCTATT  277
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAATTAT-GTCAGTTGAGGGAGTCAATTCCCAAGACTCTCTATT  297

seq1  TTGACAAT-AAAAAGAAAATTAAATTTCAGGCTGGGGAATTGGTTCAATA  326
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATAAAAAAGAAAATTAAATTTCAGGCTGGGGAATTGGTTCAATA  347

seq1  TATAAAATGCTT-CCCACAAAAACAAGAGGACCTGAGTTCCAACCTCTAG  375
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGCTTCCCCACAAAAACAAGAGGACCTGAGTTCCAACCTCTAG  397

seq1  AACTCGTTCAAACCCAAGTTTGGTTGTTTGAGTCTTCAATCCCAGTGGGA  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGTTCAAACCCAAGTTTGGTTGTTTGAGTCTTCAATCCCAGTGGGA  447

seq1  GATGGAGACCAAGCTTCTGATGCCAGAAATTCTATGGACTAACCACTGGA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGACCAAGCTTCTGATGCCAGAAATTCTATGGACTAACCACTGGA  497

seq1  TTCTGACTCAAAGGACAGAGTCAGAGAAGCCAATACTAAGCTAGGAATTA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTCAAAGGACAGAGTCAGAGAAGCCAATACTAAGCTAGGAATTA  547

seq1  ATAATGTGTTTTATGTACCCATATAAGAGTTGGCTTCTAAATAATGAATG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTTTTATGTACCCATATAAGAGTTGGCTTCTAAATAATGAATG  597

seq1  CCAGACCCTGAGAATTCAATCTTCACTGTCATGGTGACGCTAACCACCAT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCTGAGAATTCAATCTTCACTGTCATGGTGACGCTAACCACCAT  647

seq1  GAACCTCTATCTTTGGCAACTTGCTCTTGTGAGACACCCACAGGGACAAT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCTATCTTTGGCAACTTGCTCTTGTGAGACACCCACAGGGACAAT  697

seq1  GTCTAATGCCTACTTTCTTCAGACAGCTCCACTTCAACAGGAAAGATCTG  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATGCCTACTTTCTTCAGACAGCTCCACTTCAACAGGAAAGATCTG  747

seq1  GGCTGTACATTATACCCGTTCATCTCCACCCACTCAGTAATAAAGCAGAC  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTACATTATACCCGTTCATCTCCACCCACTCAGTAATAAAGCAGAC  797

seq1  ACAACTTCATCCATGAAGGGATGGGACTATCAGAGTACAGTAGTGGGAAA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCATCCATGAAGGGATGGGACTATCAGAGTACAGTAGTGGGAAA  847

seq1  CAGCTCCCCAGGACTTCTTATATTAATCTCCAAAGAAGCAAAAATATTAG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCCAGGACTTCTTATATTAATCTCCAAAGAAGCAAAAATATTAG  897

seq1  ACTGCAGAGCAATCACTGGCAGTTTGACTTGATCCAGAAGGAACTTTGAC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAGCAATCACTGGCAGTTTGACTTGATCCAGAAGGAACTTTGAC  947

seq1  ATCCCAGAGGTAACCAAACAGCCTTCTTTTCCCATTCACCCACTGTATTT  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGAGGTAACCAAACAGCCTTCTTTTCCCATTCACCCACTGTATTT  997

seq1  TGCATGGCAGGCACAGAGTGAAGGGAGTACAACTTCCCCACCTTGTGTGC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGCAGGCACAGAGTGAAGGGAGTACAACTTCCCCACCTTGTGTGC  1047

seq1  AGAAGTATATACTCACAAAATGCCACCCTGAAAAATATAGGGGGCACCAA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATATACTCACAAAATGCCACCCTGAAAAATATAGGGGGCACCAA  1097

seq1  CACTGTTCATCAGGAAATTCGCTCCAAGCAAAAATTCTATGAATTC  1121
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTCATCAGGAAATTCGCTCCAAGCAAAAATTCTATGAATTC  1143