BAC Information

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BAC

Clone NameB6Ng01-209C15
Chromosome18 (Build37)
Map Location 53,607,235 - 53,765,852
singlet/doubletdoublet
Overlap genePrdm6
Upstream geneSrfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic
Downstream geneCcdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C15.bB6Ng01-209C15.g
ACCGA027856GA027857
length1,066829
definitionB6Ng01-209C15.b B6Ng01-209C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,764,790 - 53,765,852)(53,607,235 - 53,608,059)
sequence
gaattcttttggctgattctatttttgtcatctttttgttatctgaagtt
ctaattggaactgggactacaactaggcaataacagagtctttgcctcac
atacataaggccctaagctcaatttctagtaccttcctccccactccccc
aaaacccaaacctttaaaattaaaatcatatgaataacactttcctgagt
tgttaagtaatttggcaaactatcaaacatgagggaatactggaaacctg
caggtttaaagccagttggtcataatataaaaattccagggagtctgggg
ttgtagctcctacctaaagtgagggtaagcctgtggaagattgtgctcta
tgggttcaggtgtcactgcagtaggagggcagatattcacaggacctggg
tttccaatgaaaaaaatcaggacccagtgaggattccaggtttacatatg
gcagtgggagggctgtgtcttcaacaatcctttgggctctatgtgttgct
ggtatgaaatctcaatttgtgtttgttgaaagaagaaattgcataactaa
ctctattaaaaaaaaaccactagtcttcacagttttgtaccatgttgtat
atgatacatgccaaagtttaaaggaaggaagaattaagtgaatgctacga
aatatcagcaatagtttttctctgattgaacagatgataatttcccaagc
atatattcctctttgtttgctcctatgtttgtttatcttatgctttgctt
ttatatttatgtgaaaagtattttttccctgtgggtatcattttggctca
gtggtcttggaaacttcatttcgccatatgttaaattgaggcttaaacaa
gatgacttaatatttcattcccttttaaaactgtaagtgtgtctctaaag
acgtgtgtttatttacccacatctgaaaaaaaatccaccagatgttggag
gtgagggagagaggttttgggattaggtgagcccttgccaccgaaagatt
gcataaagctgattaaccgagtgaaaaatggactatgacagattgattct
gggaagcttcttctgc
tgatccgcggattccagtagagatgtaaccacgtgagacatctatctttg
tggattaacaattagagacatccttttccactgagagaatgttattttgg
ctagccagaccacagcctgtaagccactctagtaaatcctcttaaaatat
atatgtactcattccgtctgtcctgttcctttagagagccctgattaata
tgctgtgtttccatctctggctgaaataagcacaagacgaagttagatga
accattaaagacttggccaagcccataggttctcaaacaacttctgtgga
ccccaaatgttagcaattatgtactgtcatacattcatttgtactttcca
tttaaaaaaaaaggttactcttatactgtgtatgatgctttggtttaaaa
ttcattgctttaagattctcttattttaaacaaacaaacaaacaaacaaa
caccttgggccttcaagatgtctcgaccaataagatacttactgccaagc
ttaataaccccctgacctgcataggggaagggcagaatgattccagcaag
atgccatgtgatctctgacctccatacttatactgtggcatgaggtcacc
tacccctacacacacacacacacacacacacacacacacacggcatgcat
gcaacgtaagtgtaaacaaagattcttgtaatcttgtagattcttgatgg
agtgggcatggtgacctttaattccagtaggcaaagggaggcagatcttc
tgtgaatgcaagcccagcctggattacatagtgagttccaggctgacgag
agcccacgttatcagatcctgtcttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_53764790_53765852
seq2: B6Ng01-209C15.b_39_1104 (reverse)

seq1  GCAGATGAAGCCTCCCAGAATCCATCTGTCATAGTCCATTTTTCACTCGC  50
      ||||| ||||| |||||||||| |||||||||||||||||||||||||| 
seq2  GCAGAAGAAGCTTCCCAGAATCAATCTGTCATAGTCCATTTTTCACTCGG  50

seq1  TAAATCAGCTTTATGCAAATCTTTCCGTGGC-AGGGCTCACCT-ATTCCA  98
      | |||||||||||||| |||||||| ||||| ||||||||||| || |||
seq2  TTAATCAGCTTTATGC-AATCTTTCGGTGGCAAGGGCTCACCTAATCCCA  99

seq1  AAACCTCTCTCCCTCACCTCCAACATCT-GTGGATTTTTTTTCAGATGTG  147
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACCTCTCTCCCTCACCTCCAACATCTGGTGGATTTTTTTTCAGATGTG  149

seq1  GGTAAATAAACACACGTCTTTAGAGACACACTTACAGTTTTAAAAGGGAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAACACACGTCTTTAGAGACACACTTACAGTTTTAAAAGGGAA  199

seq1  TGAAATATTAAGTCATCTTGTTTAAGCCTCAATTTAACATATGGCGAAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATTAAGTCATCTTGTTTAAGCCTCAATTTAACATATGGCGAAAT  249

seq1  GAAGTTTCCAAGACCACTGAGCCAAAATGATACCCACAGGGAAAAAATAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTCCAAGACCACTGAGCCAAAATGATACCCACAGGGAAAAAATAC  299

seq1  TTTTCACAT-AATATAAAAGCAAAGCATAAGATAAACAAACATAGGAGCA  346
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATAAATATAAAAGCAAAGCATAAGATAAACAAACATAGGAGCA  349

seq1  AACAAAGAGGAATATATGCTTGGGAAATTATCATCTGTTCAATCAGAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGGAATATATGCTTGGGAAATTATCATCTGTTCAATCAGAGAA  399

seq1  AAACTATTGCTGATATTTCGTAGCATTCACTTAATTCTTCCTTCCTTTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTGCTGATATTTCGTAGCATTCACTTAATTCTTCCTTCCTTTAA  449

seq1  ACTTTGGCATGTATCATATACAACATGGTACAAAACTGTGAAGACTAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGCATGTATCATATACAACATGGTACAAAACTGTGAAGACTAGTG  499

seq1  GTTTTTTTTTAATAGAGTTAGTTATGCAATTTCTTCTTTCAACAAACACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTAATAGAGTTAGTTATGCAATTTCTTCTTTCAACAAACACA  549

seq1  AATTGAGATTTCATACCAGCAACACATAGAGCCCAAAGGATTGTTGAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGATTTCATACCAGCAACACATAGAGCCCAAAGGATTGTTGAAGA  599

seq1  CACAGCCCTCCCACTGCCATATGTAAACCTGGAATCCTCACTGGGTCCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCCTCCCACTGCCATATGTAAACCTGGAATCCTCACTGGGTCCTG  649

seq1  ATTTTTTTCATTGGAAACCCAGGTCCTGTGAATATCTGCCCTCCTACTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCATTGGAAACCCAGGTCCTGTGAATATCTGCCCTCCTACTGC  699

seq1  AGTGACACCTGAACCCATAGAGCACAATCTTCCACAGGCTTACCCTCACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACACCTGAACCCATAGAGCACAATCTTCCACAGGCTTACCCTCACT  749

seq1  TTAGGTAGGAGCTACAACCCCAGACTCCCTGGAATTTTTATATTATGACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAGGAGCTACAACCCCAGACTCCCTGGAATTTTTATATTATGACC  799

seq1  AACTGGCTTTAAACCTGCAGGTTTCCAGTATTCCCTCATGTTTGATAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTAAACCTGCAGGTTTCCAGTATTCCCTCATGTTTGATAGTT  849

seq1  TGCCAAATTACTTAACAACTCAGGAAAGTGTTATTCATATGATTTTAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAATTACTTAACAACTCAGGAAAGTGTTATTCATATGATTTTAATT  899

seq1  TTAAAGGTTTGGGTTTTGGGGGAGTGGGGAGGAAGGTACTAGAAATTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTTTGGGTTTTGGGGGAGTGGGGAGGAAGGTACTAGAAATTGAG  949

seq1  CTTAGGGCCTTATGTATGTGAGGCAAAGACTCTGTTATTGCCTAGTTGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCCTTATGTATGTGAGGCAAAGACTCTGTTATTGCCTAGTTGTA  999

seq1  GTCCCAGTTCCAATTAGAACTTCAGATAACAAAAAGATGACAAAAATAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTTCCAATTAGAACTTCAGATAACAAAAAGATGACAAAAATAGA  1049

seq1  ATCAGCCAAAAGAATTC  1063
      |||||||||||||||||
seq2  ATCAGCCAAAAGAATTC  1066

seq1: chr18_53607235_53608059
seq2: B6Ng01-209C15.g_44_862

seq1  ATTCCAGTAGAGACTGAAGACCAGGTGAGACATCTATCTTTGTGGATTAA  50
      ||||||||||||| || | |||| ||||||||||||||||||||||||||
seq2  ATTCCAGTAGAGA-TGTA-ACCACGTGAGACATCTATCTTTGTGGATTAA  48

seq1  CAATTACCAGTATCTTGGCTTTTCCACTGAGAGAATGTTATTTTGGCTAG  100
      ||||||     |||    ||||||||||||||||||||||||||||||||
seq2  CAATTAGAGACATC----CTTTTCCACTGAGAGAATGTTATTTTGGCTAG  94

seq1  CCAGACCACAGCCTGTAAGCCACTCTAGTAAATCCTCTTTTACCATATAT  150
      |||||||||||||||||||||||||||||||||||||  |||  ||||||
seq2  CCAGACCACAGCCTGTAAGCCACTCTAGTAAATCCTC--TTAAAATATAT  142

seq1  ATGTACTCATTCCGTCTGTCCTGTTCCTTTAGAGAGCCCTGATTAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCATTCCGTCTGTCCTGTTCCTTTAGAGAGCCCTGATTAATATG  192

seq1  CTGTGTTTCCATCTCTGGCTGAAATAAGCACAAGACGAAGTTAGATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTCCATCTCTGGCTGAAATAAGCACAAGACGAAGTTAGATGAAC  242

seq1  CATTAAAGACTTGGCCAAGCCCATAGGTTCTCAAACAACTTCTGTGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGACTTGGCCAAGCCCATAGGTTCTCAAACAACTTCTGTGGACC  292

seq1  CCAAATGTTAGCAATTATGTACTGTCATACATTCATTTGTACTTTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTAGCAATTATGTACTGTCATACATTCATTTGTACTTTCCATT  342

seq1  TAAAAAAAAAGGTTACTCTTATACTGTGTATGATGCTTTGGTTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAGGTTACTCTTATACTGTGTATGATGCTTTGGTTTAAAATT  392

seq1  CATTGCTTTAAGATTCTCTTATTTTAAACAAACAAACAAACAAACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTAAGATTCTCTTATTTTAAACAAACAAACAAACAAACAAACA  442

seq1  CCTTGGGCCTTCAAGATGTCTCGACCAATAAGATACTTACTGCCAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCCTTCAAGATGTCTCGACCAATAAGATACTTACTGCCAAGCTT  492

seq1  AATAACCCCCTGACCTGCATAGGGGAAGGGCAGAATGATTCCAGCAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCCTGACCTGCATAGGGGAAGGGCAGAATGATTCCAGCAAGAT  542

seq1  GCCATGTGATCTCTGACCTCCATACTTATACTGTGGCATGAGGTCACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGATCTCTGACCTCCATACTTATACTGTGGCATGAGGTCACCTA  592

seq1  CCCCTACACACACACACACACACACACACACACACACACGGCATGCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACACACACACACACACACACACACACACACACACGGCATGCATGC  642

seq1  AACGTAAGTGTAAACAAAGATTCTTGTAATCTTGTAGATTCTTGATGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAGTGTAAACAAAGATTCTTGTAATCTTGTAGATTCTTGATGGAG  692

seq1  TGGGCATGGTGACCTTTAATTCCAGTAGGCAAAGGGAGGCAGATC-TCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGCATGGTGACCTTTAATTCCAGTAGGCAAAGGGAGGCAGATCTTCTG  742

seq1  TGAATGCAAGCCCAGCCTGGATTACATAGTGAGTTCCAGGCTGAGGAGAG  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAATGCAAGCCCAGCCTGGATTACATAGTGAGTTCCAGGCTGACGAGAG  792

seq1  -CCACGTTATCAGATCCTGTCTCCAAC  825
       ||||||||||||||||||||| ||||
seq2  CCCACGTTATCAGATCCTGTCTTCAAC  819