BAC Information

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BAC

Clone NameB6Ng01-210H23
Chromosome7 (Build37)18 (Build37)
Map Location 135,212,923 - 135,213,10837,109,306 - 37,110,345
singlet/doubletsingletsinglet
Overlap geneItgam
Upstream geneAI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675
Downstream geneItgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210H23.bB6Ng01-210H23.g
ACCGA028821GA028822
length3181,034
definitionB6Ng01-210H23.b B6Ng01-210H23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,212,923 - 135,213,108)(37,109,306 - 37,110,345)
sequence
ttaaaaatggctgttcttcaagaggacctaggttcaattcccagcaccta
catggtagaacacaaccacctctaactccagttccaggggatttgatgcc
ctcttctggctacttcaggcattaaatgcatgtgaaccatagacacagac
tggcaaaagacatttttacaaaaacacaaagaagtgtatttttagtaaaa
acacagacacatagctcaaatgataaattaatgaagatatggttcaagtt
ttatatatatatatatatatatatatatatatatatatagagagagagag
agagagagagagagagag
gaattcattaggtagatcaggctggccttgaactcacagagatctgcctg
tctctgccccctgagtgctggaatcaaaggggtgcaccaatacacttgac
tgaaatacatattttctttattattcctcttgcttatttccattttcttt
cctagaatcatctttttctctttctccattcaagtatttgccacagcatg
ctcaacctcagttcgatacttattttatcaatctgctatcatcctgtggt
aggttacagggtcattcagagtttttgttccttgatatgggacttcagtc
ttctaaagcagctcttcttgaaattcttaagaagagtttcaaaaggacat
ttttgaaagtttttgaggtagggtctcaagcagcccatgttgttcttgaa
cttgggcaaatatgatttgaagagttttgagtgggctagagagatggctc
agcagttaagagcaccgattgctcttccagaggttctgagttcaattccc
agcaaccacatggtagctcacaaccatttgtaatgggatccgatgccctc
tttttgggtgtctgaagagagctatggtgtactcacataaaataaaataa
ataaatcttgtaaaaaaaagagttttgagtgatatatacatatatactct
aaaaagtgaataattcactagctaattaattaatgtatatgtcacatata
gcgctcagaggacaagttttgggagttgacaatatccttcctctatgtgt
tctgagtttaagaatcaaattaagattgccagttttgcatgacaagtgct
ttttgcccactaatccacctcatcgtccccatactgaatataaataaata
aatatttatttcaaatgaataatgtattagttatttctcttgtggtggtg
acaaagtgctaataaaatctacttaaggaaagaagggttgttttggttca
tggttctggggtaactactgctcatcacaggagggaagtctggcagcagc
cagctgtctgtagtaagagtagagaatgatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135212923_135213108
seq2: B6Ng01-210H23.b_75_370 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATAT  50

seq1  ATATATATATATATATA-----TGTACCATAT------------------  77
      |||||||||||||||||     || |||||||                  
seq2  ATATATATATATATATAAAACTTGAACCATATCTTCATTAATTTATCATT  100

seq1  ---GC---------------------------------------------  79
         ||                                             
seq2  TGAGCTATGTGTCTGTGTTTTTACTAAAAATACACTTCTTTGTGTTTTTG  150

seq1  -----ATATCTGGTGCC---------CAATGAGATCAC------------  103
           || |||  ||||         | ||| | ||||            
seq2  TAAAAATGTCTTTTGCCAGTCTGTGTCTATG-GTTCACATGCATTTAATG  199

seq1  ----AAGT--------GAGAG--TCAGGGTCCCTGGAACTGAAGTTATAG  139
          ||||        ||| |  |||    ||||||||||| ||||| ||
seq2  CCTGAAGTAGCCAGAAGAGGGCATCAAATCCCCTGGAACTGGAGTTAGAG  249

seq1  ATTGTTATGAGCCACTATGTAGGTGCTGGGAATCAAACCCAGGTCCT  186
       | ||| ||  | || |||||||||||||||||  |||| |||||||
seq2  GTGGTTGTGTTCTACCATGTAGGTGCTGGGAATTGAACCTAGGTCCT  296

seq1: chr18_37109306_37110345
seq2: B6Ng01-210H23.g_66_1099

seq1  GAATTCATTAGGTAGATCAGGCTGGCCTTGAACTCACAGAGATCTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTAGATCAGGCTGGCCTTGAACTCACAGAGATCTGCCTG  50

seq1  TCTCTGCCCCCTGAGTGCTGGAATCAAAGGGGTGCACCAATACACTTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCCCCTGAGTGCTGGAATCAAAGGGGTGCACCAATACACTTGAC  100

seq1  TGAAATACATATTTTCTTTATTATTCCTCTTGCTTATTTCCATTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACATATTTTCTTTATTATTCCTCTTGCTTATTTCCATTTTCTTT  150

seq1  CCTAGAATCATCTTTTTCTCTTTCTCCATTCAAGTATTTGCCACAGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATCATCTTTTTCTCTTTCTCCATTCAAGTATTTGCCACAGCATG  200

seq1  CTCAACCTCAGTTCGATACTTATTTTATCAATCTGCTATCATCCTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTCAGTTCGATACTTATTTTATCAATCTGCTATCATCCTGTGGT  250

seq1  AGGTTACAGGGTCATTCAGAGTTTTTGTTCCTTGATATGGGACTTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACAGGGTCATTCAGAGTTTTTGTTCCTTGATATGGGACTTCAGTC  300

seq1  TTCTAAAGCAGCTCTTCTTGAAATTCTTAAGAAGAGTTTCAAAAGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCAGCTCTTCTTGAAATTCTTAAGAAGAGTTTCAAAAGGACAT  350

seq1  TTTTGAAAGTTTTTGAGGTAGGGTCTCAAGCAGCCCATGTTGTTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAGTTTTTGAGGTAGGGTCTCAAGCAGCCCATGTTGTTCTTGAA  400

seq1  CTTGGGCAAATATGATTTGAAGAGTTTTGAGTGGGCTAGAGAGATGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCAAATATGATTTGAAGAGTTTTGAGTGGGCTAGAGAGATGGCTC  450

seq1  AGCAGTTAAGAGCACCGATTGCTCTTCCAGAGGTTCTGAGTTCAATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGAGCACCGATTGCTCTTCCAGAGGTTCTGAGTTCAATTCCC  500

seq1  AGCAACCACATGGTAGCTCACAACCATTTGTAATGGGATCCGATGCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCACATGGTAGCTCACAACCATTTGTAATGGGATCCGATGCCCTC  550

seq1  TTTTTGGGTGTCTGAAGAGAGCTATGGTGTACTCACATAAAATAAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTGTCTGAAGAGAGCTATGGTGTACTCACATAAAATAAAATAA  600

seq1  ATAAATCTTGTAAAAAAAAGAGTTTTGAGTGATATATACATATATACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTGTAAAAAAAAGAGTTTTGAGTGATATATACATATATACTCT  650

seq1  AAAAAGTGAATAATTCACTAGCTAATTAATTAATGTATATGTCACATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAATAATTCACTAGCTAATTAATTAATGTATATGTCACATATA  700

seq1  GCGCTCAGAGGACAAGTTTTGGGAGTTGACAATATCCTTCCTCTATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCAGAGGACAAGTTTTGGGAGTTGACAATATCCTTCCTCTATGTGT  750

seq1  TCTGAGTTTAAGAATCAAATTAAGATTGCCAGTTTTGCATGACAAGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTAAGAATCAAATTAAGATTGCCAGTTTTGCATGACAAGTGCT  800

seq1  TTTTGCCCACTAATCCACCTCATCGTCCCCATACTGAATATAAATAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCCACTAATCCACCTCATCGTCCCCATACTGAATATAAATAAATA  850

seq1  AATATTTATTTCAAATGAATAATGTATTAGTTATTTCTCTTGTGGTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTTCAAATGAATAATGTATTAGTTATTTCTCTTGTGGTGGTG  900

seq1  ACAAAGTGCTAATAAAATCTACTTAAGGAAAGAAGGGTTTGTTTTGGTTC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAAAGTGCTAATAAAATCTACTTAAGGAAAGAAGGG-TTGTTTTGGTTC  949

seq1  ATGGTTCTGGGGTAACTACTGCCCATCACAGGAGGGAAGTCTTGGCAGCA  1000
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  ATGGTTCTGGGGTAACTACTGCTCATCACAGGAGGGAAGTC-TGGCAGCA  998

seq1  GGCCAGCTTGTCCTGTAGTAGGAAGTAGAGAATGATGAAT  1040
       |||||| ||| |||||||| | |||||||||||||||||
seq2  -GCCAGC-TGT-CTGTAGTAAG-AGTAGAGAATGATGAAT  1034