BAC Information

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BAC

Clone NameB6Ng01-211K16
Chromosome18 (Build37)
Map Location 18,005,868 - 18,136,853
singlet/doubletdoublet
Overlap genenone
Upstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211K16.bB6Ng01-211K16.g
ACCGA029669GA029670
length1,2081,103
definitionB6Ng01-211K16.b B6Ng01-211K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,005,868 - 18,007,053)(18,135,752 - 18,136,853)
sequence
gaattcagtcccaatgaatacatttataaaacatttccacacttaaaact
ctgggaacatagaaagattgttagagacagaagatcaaggaatttcctga
gagcttgtgttttatagtaacattagaagtgacatccataaaattttacc
aacataactgtccattatgggagctgggaaagaatgacgccaatgagtcc
agaatgctgcagccacacataaagaactatagacacctgaggaaacctgg
aagtgggaaaggtgagtaggggtttctcccagggaagagcacatcaattg
atttctagtgtcaactagcactgaaaatacacatacacacacacacacac
acacacacacacacacacatatatatatatgtatatatatatatatatat
atatatatatgcacatatatatatacacgcacatatatatgtatacacag
acacacacgcatatatatgcatacatatataaatatatatatttgaaaat
gaaaagaatgggaaacttttcatacaaggaaaaagacaaaagaatttact
cttatagttaagaatacttgctataattgtaaccactttacttgattttt
tgttttaattaatactttccacaaaagtaatttaaaccacattttggaaa
aaaatgaattaatgcaagttagctaaattcttgccttaatattttatctc
cacttataaaattttatcaagtctctactatatctaaggagtgtttgatc
ttctcctcccccaagattattgaaaagttaggatttcccatgcctattaa
gttgtctagaaactaaagtactgtgttcattcagtggcccatctcagatg
aaatgcctattaatttgtcagcctgggcagacagtgttgggcccttgggt
cacccctgcaataagaaagacaagatacatttttacttttggtgagaaat
taataaaatgatgggcatgcagaacagaattcagggctttctaacatcac
actttagactgtctgcaacttagagctgaagttatattaaggttttttct
aagaaaaagctttcttgattcctgatcaatcagaagtctagatagtgata
acacacatgttccttggagatatatgttcatccagccattcttttgggaa
ctcagaattaggtctcttgattgatgtttaattccacctgtgaattctct
tcaggcag

gaattccttagacaattaatacatattaatatttcacttctgtttttttt
gttcagataatgaagaaataatagaccttaattatatttgaaaaataaat
tggacaatattttggcaattttttttctgtctaataagtaaaactgtgaa
tcctatgcttgacaagtaaacaaggaggcaaagacagagagagaccaaga
catataaccagagacagagaaacacaaaaagatatcaaccaaaatttgaa
atattttaagtaaaattgtctgcaatctaatatgacaaaataactgcaca
tgtaggcgttgcatctacgtgttctccttgacatttgatatggtgaatga
gtggaagagagcctcaattgtaatgtgatatattacttctctttcacgtt
ctcacacaacctttaggaacttgttctcacattatttgttgtgcggctat
ggataacgtcattctctttctagtttctcttttatttacagctatgtttt
tcttcatacagttttactttccaacagtctttaaatttttaaagtcttct
ttaatttcagaaatttcttgctattttttttcaatatttttccttataag
gttaggttgattccacttgtaaagtattcgattcttcagaaaaagaagag
atatttttgcattaggctcctatttaatattcacctttctggcattcttt
gttgcttttcctttgtaatctgctcatatttttactagttgctaatcctt
ggtattaagcatttgtaattaagctcagctataattttatgcatagtatt
attataatcggttacagttttatcttaaaatgttatttttatttattttc
atttttttcttttgggatggggtcccattacactatactaacctccactc
ataaatagctgaagatgatttctatgtttgatcttccagccctacttctt
gaagaacaggtactatgaggatgctttatcatattaggtacaagagttgt
gttggggttgaacccagggcatgcatatgaaagagaatattctaccagct
aaaatacatcatcaactacaaaatattcttgagtaattcttttcttccat
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18005868_18007053
seq2: B6Ng01-211K16.b_50_1257

seq1  GAATTCAGTCCCAATGAATACATTTATAAAACATTTCCACACTTAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCAATGAATACATTTATAAAACATTTCCACACTTAAAACT  50

seq1  CTGGGAACATAGAAAGATTGTTAGAGACAGAAGATCAAGGAATTTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACATAGAAAGATTGTTAGAGACAGAAGATCAAGGAATTTCCTGA  100

seq1  GAGCTTGTGTTTTATAGTAACATTAGAAGTGACATCCATAAAATTTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTGTTTTATAGTAACATTAGAAGTGACATCCATAAAATTTTACC  150

seq1  AACATAACTGTCCATTATGGGAGCTGGGAAAGAATGACGCCAATGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACTGTCCATTATGGGAGCTGGGAAAGAATGACGCCAATGAGTCC  200

seq1  AGAATGCTGCAGCCACACATAAAGAACTATAGACACCTGAGGAAACCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTGCAGCCACACATAAAGAACTATAGACACCTGAGGAAACCTGG  250

seq1  AAGTGGGAAAGGTGAGTAGGGGTTTCTCCCAGGGAAGAGCACATCAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAAAGGTGAGTAGGGGTTTCTCCCAGGGAAGAGCACATCAATTG  300

seq1  ATTTCTAGTGTCAACTAGCACTGAAAATACACATACACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGTGTCAACTAGCACTGAAAATACACATACACACACACACACAC  350

seq1  ACACACACACACACACACATATATATATATGTATATATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATATATATATATGTATATATATATATATATAT  400

seq1  ATATATATATGCACATATATATATACACGCACATATATATGTATACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATGCACATATATATATACACGCACATATATATGTATACACAG  450

seq1  ACACACACGCATATATATGCATACATATATAAATATATATATTTGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCATATATATGCATACATATATAAATATATATATTTGAAAAT  500

seq1  GAAAAGAATGGGAAACTTTTCATACAAGGAAAAAGACAAAAGAATTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATGGGAAACTTTTCATACAAGGAAAAAGACAAAAGAATTTACT  550

seq1  CTTATAGTTAAGAATACTTGCTATAATTGTAACCACTTTACTTGATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTTAAGAATACTTGCTATAATTGTAACCACTTTACTTGATTTTT  600

seq1  TGTTTTAATTAATACTTTCCACAAAAGTAATTTAAACCACATTTTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATTAATACTTTCCACAAAAGTAATTTAAACCACATTTTGGAAA  650

seq1  AAAATGAATTAATGCAAGTTAGCTAAATTCTTGCCTTAATATTTTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATTAATGCAAGTTAGCTAAATTCTTGCCTTAATATTTTATCTC  700

seq1  CACTTATAAAATTTTATCAAGTCTCTACTATATCTAAGGAGTGTTTGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAAAATTTTATCAAGTCTCTACTATATCTAAGGAGTGTTTGATC  750

seq1  TTCTCCTCCCCCAAGATTATTGAAAAGTTAGGATTTCCCATGCCTATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCCCCAAGATTATTGAAAAGTTAGGATTTCCCATGCCTATTAA  800

seq1  GTTGTCTAGAAACTAAAGTACTGTGTTCATTCAGTGGCCCATCTCAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTAGAAACTAAAGTACTGTGTTCATTCAGTGGCCCATCTCAGATG  850

seq1  AAATGCCTATTAATTTGTCAGCCT-GGCAGACAGTGTTGGG-CCTTGGGT  898
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  AAATGCCTATTAATTTGTCAGCCTGGGCAGACAGTGTTGGGCCCTTGGGT  900

seq1  CA-CCCTGCAATAAGAAAGACAAGATACA-TTTTAC-TTTGGTGAGAAAT  945
      || |||||||||||||||||||||||||| |||||| |||||||||||||
seq2  CACCCCTGCAATAAGAAAGACAAGATACATTTTTACTTTTGGTGAGAAAT  950

seq1  TAAT-AAATGATGGGCATGCAG-ACAGAA-TCAGGGC-TTCTAACATCAC  991
      |||| ||||||||||||||||| |||||| ||||||| ||||||||||||
seq2  TAATAAAATGATGGGCATGCAGAACAGAATTCAGGGCTTTCTAACATCAC  1000

seq1  AC-TTAGACTGTCTGCAACTTAAGAGCTGAAG-TATATTA--GGTTTTTC  1037
      || |||||||||||||||||| |||||||||| |||||||  | ||||||
seq2  ACTTTAGACTGTCTGCAACTT-AGAGCTGAAGTTATATTAAGGTTTTTTC  1049

seq1  TAAG-AAAAGCTTCCTGTATCCCTGATCAATCAGAAGTCTAGGAATAGTG  1086
      |||| |||||||| ||  || |||||||||||||||||||||  ||||||
seq2  TAAGAAAAAGCTTTCTTGATTCCTGATCAATCAGAAGTCTAG--ATAGTG  1097

seq1  ATAA-ACACATG-TCCCTGGAG-TATATG-TCAT-CAGCATTCCTTTTGG  1131
      |||| ||||||| ||| ||||| |||||| |||| ||||  | |||||||
seq2  ATAACACACATGTTCCTTGGAGATATATGTTCATCCAGCCATTCTTTTGG  1147

seq1  GAACTCAGGAGTTAGGTCTC-TGAATGATGTTTAAATCCAC---TGA---  1174
      ||||||| || ||||||||| ||| |||||||||| |||||   |||   
seq2  GAACTCA-GAATTAGGTCTCTTGATTGATGTTTAATTCCACCTGTGAATT  1196

seq1  TTCTTCAGGCAG  1186
       |||||||||||
seq2  CTCTTCAGGCAG  1208


seq1: chr18_18135752_18136853
seq2: B6Ng01-211K16.g_69_1171 (reverse)

seq1  TGAATGTGAAGAAAAGAATTTACTCAAGAATATTTTTGTAGTTGATGATG  50
      |||||| ||||||||||| ||||||||||||| |||||||||||||||||
seq2  TGAATG-GAAGAAAAGAA-TTACTCAAGAATA-TTTTGTAGTTGATGATG  47

seq1  TATTTTAGCTGGTAGAATATTTCTCTTTCATATGCATGCCCTGGGTTCAA  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTTTAGCTGGTAGAATA-TTCTCTTTCATATGCATGCCCTGGGTTCAA  96

seq1  CCC--ACACCACTCTTGTACCTAATATGATAAAGCATCCTCATAGTACCT  148
      |||  |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACAACTCTTGTACCTAATATGATAAAGCATCCTCATAGTACCT  146

seq1  G-TCTTCAAGAAGTAGGGCTGGAAGATCAAACATAG-AATCATCTTCAGC  196
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTCTTCAAGAAGTAGGGCTGGAAGATCAAACATAGAAATCATCTTCAGC  196

seq1  TATTTATGAGTGGAGGTTAGTATAGTGTAATGGGACCCCATCCCAAAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAGTGGAGGTTAGTATAGTGTAATGGGACCCCATCCCAAAAGA  246

seq1  AAAAAAATGAAAT-AATAAAAATAACATTTTAAGATAAAACTGTAACCGA  295
      ||||||   |||| ||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGAAAATAAATAAAAATAACATTTTAAGATAAAACTGTAACCGA  296

seq1  TTATAATAATACTATGCATAAAATTATAGCTGAGCTTAATTACAAATGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAATACTATGCATAAAATTATAGCTGAGCTTAATTACAAATGCT  346

seq1  TAATACCAAGGATTAGCAACTAGTAAAAATATGAGCAGATTACAAAGGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCAAGGATTAGCAACTAGTAAAAATATGAGCAGATTACAAAGGAA  396

seq1  AAGCAACAAAGAATGCCAGAAAGGTGAATATTAAATAGGAGCCTAATGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAAAGAATGCCAGAAAGGTGAATATTAAATAGGAGCCTAATGCA  446

seq1  AAAATATCTCTTCTTTTTCTGAAGAATCGAATACTTTACAAGTGGAATCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTCTTCTTTTTCTGAAGAATCGAATACTTTACAAGTGGAATCA  496

seq1  ACCTAACCTTATAAGGAAAAATATTGAAAAAAAATAGCAAGAAATTTCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACCTTATAAGGAAAAATATTGAAAAAAAATAGCAAGAAATTTCTG  546

seq1  AAATTAAAGAAGACTTTAAAAATTTAAAGACTGTTGGAAAGTAAAACTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAAGACTTTAAAAATTTAAAGACTGTTGGAAAGTAAAACTGT  596

seq1  ATGAAGAAAAACATAGCTGTAAATAAAAGAGAAACTAGAAAGAGAATGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAACATAGCTGTAAATAAAAGAGAAACTAGAAAGAGAATGAC  646

seq1  GTTATCCATAGCCGCACAACAAATAATGTGAGAACAAGTTCCTAAAGGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCATAGCCGCACAACAAATAATGTGAGAACAAGTTCCTAAAGGTT  696

seq1  GTGTGAGAACGTGAAAGAGAAGTAATATATCACATTACAATTGAGGCTCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAACGTGAAAGAGAAGTAATATATCACATTACAATTGAGGCTCT  746

seq1  CTTCCACTCATTCACCATATCAAATGTCAAGGAGAACACGTAGATGCAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTCATTCACCATATCAAATGTCAAGGAGAACACGTAGATGCAAC  796

seq1  GCCTACATGTGCAGTTATTTTGTCATATTAGATTGCAGACAATTTTACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATGTGCAGTTATTTTGTCATATTAGATTGCAGACAATTTTACTT  846

seq1  AAAATATTTCAAATTTTGGTTGATATCTTTTTGTGTTTCTCTGTCTCTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCAAATTTTGGTTGATATCTTTTTGTGTTTCTCTGTCTCTGG  896

seq1  TTATATGTCTTGGTCTCTCTCTGTCTTTGCCTCCTTGTTTACTTGTCAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCTTGGTCTCTCTCTGTCTTTGCCTCCTTGTTTACTTGTCAAG  946

seq1  CATAGGATTCACAGTTTTACTTATTAGACAGAAAAAAAATTGCCAAAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATTCACAGTTTTACTTATTAGACAGAAAAAAAATTGCCAAAATA  996

seq1  TTGTCCAATTTATTTTTCAAATATAATTAAGGTCTATTATTTCTTCATTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAATTTATTTTTCAAATATAATTAAGGTCTATTATTTCTTCATTA  1046

seq1  TCTGAACAAAAAAAACAGAAGTGAAATATTAATATGTATTAATTGTCTAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAAAAAAAACAGAAGTGAAATATTAATATGTATTAATTGTCTAA  1096

seq1  GGAATTC  1102
      |||||||
seq2  GGAATTC  1103


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