BAC Information

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BAC

Clone NameB6Ng01-211M11
Chromosome18 (Build37)
Map Location 40,813,738 - 40,814,803
singlet/doubletsinglet
Overlap genenone
Upstream genePabpc2, LOC100041939, Yipf5, Kctd16
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M11.bB6Ng01-211M11.g
ACCGA029744GA029745
length1,1941,095
definitionB6Ng01-211M11.b B6Ng01-211M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagtcccattttttaatggggttatttgatt
tttctgaagtcaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggtttttccccac
tttctcctctacaagtttcagtgcctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcac
attcttctacatgataacaagcagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaacatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacttatattgatcctgccaatccatgagcataggagatcttttccatc
ttctgagatcttcttttaatttctttcttcagagacttgaagttcttatc
atacagatctttcacttccttagttagagtcacgcctaggtattttatat
tattttgtggctattgagaagggtgttgattcctaatttctttcctcagc
ctgttttatcttttgtgtagagaaaggccattgacttgttgagctttaat
ttatatccagctacttcaccggacgctgtttatacaggtttaggagttct
cctggtggcattttaaagggtcaataatagaccaatttattcattccgca
aaaggtgattttgatcctctccttttccaatttgtgaacacctg
gaattcagaggctattgctataattctcctgctgcttgaggagaaggcaa
tgacccagtgaggcaaaaggaacaaacaactactttaacagttgggacta
tgacagttcatgattattattgtggaggcttactttaaatataaaatcct
acttactgtctcattgtcaggtctcagaagcgcggatccatatgaacaca
ttccatccacgaaccagatgacaacattcgttacttctgtaccagtttta
cattttcagagtgtaccattttcagcccgcactgggctacattttcagta
ccagcactttgggctgattctgtaacaatagggtatataccgaattctcc
caactctgcctggccataccctgaaggcagaagtaaactttagaaggagt
tggatgtgtgcctccatgcttcacaccacgatgatgatggactaaacctc
tgaactgtaagccagcctcaattagatgattttatatgagttgccatggt
cttggtgtctctttatagcaatagaaactctaactaagaaaggtaccttc
ataattcatctaagtcctgctatgccaatggtattactccatggtaccca
gggcctgtggcttacttagcatatgaggccccacatatctcagcaatcat
agaactcattgctatctaactcttgttattgatttagtaaccagaagagg
gggaaaaagctgatcttgaggaaagacctgtttctgtagttttcctctac
agctttcacttcaagcacgaggcaaagtgtcccctggggaaagtaccatt
actttccctgggcccaggaaatacagtgggttctgaagactatcttttta
ttctaccaacacatcaatccaggccaggatttgcactatctccactgggt
ccttctttgctgttgtgagtcttcaggttggagagcttaagtttccctct
aaaaattaaacccttcttcctggtctttcgtttgcttctgggccttccag
ctctaaggtaaatgggttcctttttaaatgtttgccagggagggatctcg
aaatggcattaacattaaattgggttattcaattctccaagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40813738_40814803
seq2: B6Ng01-211M11.g_67_1161 (reverse)

seq1  CAAGCTTAGAGAATTG-ATAA-CCAATTTAATG-TAATGC--ATTAGAGA  45
      ||||||| |||||||| |||| ||||||||||| ||||||   || ||||
seq2  CAAGCTTGGAGAATTGAATAACCCAATTTAATGTTAATGCCATTTCGAGA  50

seq1  TCC--TCCTGGC-AACATTTAAAAAG--AACCATTTACC-TAGAGCTGGA  89
      |||   |||||| |||||||||||||  | ||||||||| ||||||||||
seq2  TCCCTCCCTGGCAAACATTTAAAAAGGAACCCATTTACCTTAGAGCTGGA  100

seq1  --GGCCAG-AGC-AACGAAAGA-CAGGAAG-AGGGTTT-ATTTTTAGA-G  131
        | |||| ||| ||||||||| ||||||| ||||||| ||||||||| |
seq2  AGGCCCAGAAGCAAACGAAAGACCAGGAAGAAGGGTTTAATTTTTAGAGG  150

seq1  GAAACTTAAGCTCT-CAACCTGAGAACTCACAACAGCAAAGAAGGACCCA  180
      |||||||||||||| ||||||||  |||||||||||||||||||||||||
seq2  GAAACTTAAGCTCTCCAACCTGAAGACTCACAACAGCAAAGAAGGACCCA  200

seq1  GTGGAGATAGTGC-AATCCTGGCCTGGATTGATGTGTTGGTAG-ATTAAA  228
      ||||||||||||| ||||||||||||||||||||||||||||| || |||
seq2  GTGGAGATAGTGCAAATCCTGGCCTGGATTGATGTGTTGGTAGAATAAAA  250

seq1  AGATAGTCTTCAGAACCCACTGTA-TTCCTGGG-CCAGGG-AAGT-ATGG  274
      |||||||||||||||||||||||| |||||||| |||||| |||| ||||
seq2  AGATAGTCTTCAGAACCCACTGTATTTCCTGGGCCCAGGGAAAGTAATGG  300

seq1  TACTTT-CCCAGGGGACACTTTGCCTCGTGCTTGAAGTG-AAGCTGTAGA  322
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTTTCCCCAGGGGACACTTTGCCTCGTGCTTGAAGTGAAAGCTGTAGA  350

seq1  GG-AAACTACAGAAACAGGTCTTTCCTCAAGATCAGCTTTTTCCCCCTCT  371
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTACAGAAACAGGTCTTTCCTCAAGATCAGCTTTTTCCCCCTCT  400

seq1  TCTGGTTACTAAATCAATAACAAGAGTTAGATAGCAATGAGTTCTATGAT  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTACTAAATCAATAACAAGAGTTAGATAGCAATGAGTTCTATGAT  450

seq1  TGCTGAGATATGTGGGGCCTCATATGCTAAGTAAGCCACAGGCCCTGGGT  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATATGTGGGGCCTCATATGCTAAGTAAGCCACAGGCCCTGGGT  500

seq1  ACCATGGAGTAATACCATTGGCATAGCAGGACTTAGATGAATTATGAAGG  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAGTAATACCATTGGCATAGCAGGACTTAGATGAATTATGAAGG  550

seq1  TACCTTTCTTAGTTAGAGTTTCTATTGCTATAAAGAGACACCAAGACCAT  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCTTAGTTAGAGTTTCTATTGCTATAAAGAGACACCAAGACCAT  600

seq1  GGCAACTCATATAAAATCATCTAATTGAGGCTGGCTTACAGTTCAGAGGT  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTCATATAAAATCATCTAATTGAGGCTGGCTTACAGTTCAGAGGT  650

seq1  TTAGTCCATCATCATCGTGGTGTGAAGCATGGAGGCACACATCCAACTCC  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCATCATCATCGTGGTGTGAAGCATGGAGGCACACATCCAACTCC  700

seq1  TTCTAAAGTTTACTTCTGCCTTCAGGGTATGGCCAGGCAGAGTTGGGAGA  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGTTTACTTCTGCCTTCAGGGTATGGCCAGGCAGAGTTGGGAGA  750

seq1  ATTCGGTATATACCCTATTGTTACAGAATCAGCCCAAAGTGCTGGTACTG  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGTATATACCCTATTGTTACAGAATCAGCCCAAAGTGCTGGTACTG  800

seq1  AAAATGTAGCCCAGTGCGGGCTGAAAATGGTACACTCTGAAAATGTAAAA  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGCCCAGTGCGGGCTGAAAATGGTACACTCTGAAAATGTAAAA  850

seq1  CTGGTACAGAAGTAACGAATGTTGTCATCTGGTTCGTGGATGGAATGTGT  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAGAAGTAACGAATGTTGTCATCTGGTTCGTGGATGGAATGTGT  900

seq1  TCATATGGATCCGCGCTTCTGAGACCTGACAATGAGACAGTAAGTAGGAT  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGGATCCGCGCTTCTGAGACCTGACAATGAGACAGTAAGTAGGAT  950

seq1  TTTATATTTAAAGTAAGCCTCCACAATAATAATCATGAACTGTCATAGTC  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTAAAGTAAGCCTCCACAATAATAATCATGAACTGTCATAGTC  1000

seq1  CCAACTGTTAAAGTAGTTGTTTGTTCCTTTTGCCTCACTGGGTCATTGCC  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGTTAAAGTAGTTGTTTGTTCCTTTTGCCTCACTGGGTCATTGCC  1050

seq1  TTCTCCTCAAGCAGCAGGAGAATTATAGCAATAGCCTCTGAATTC  1066
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAAGCAGCAGGAGAATTATAGCAATAGCCTCTGAATTC  1095