BAC Information

Click to search

BAC

Clone NameB6Ng01-211P03
Chromosome18 (Build37)
Map Location 53,920,920 - 54,118,048
singlet/doubletdoublet
Overlap geneCsnk1g3
Upstream geneSncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
Downstream geneEG433184, LOC667360, EG545257, LOC100042489, Zfp608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211P03.bB6Ng01-211P03.g
ACCGA029869GA029870
length1,1941,122
definitionB6Ng01-211P03.b B6Ng01-211P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,116,830 - 54,118,048)(53,920,920 - 53,922,024)
sequence
gaattcaatgatatgtttcaaagtaatgtgttactaagtaaaataagtta
ttacaaaaaaggttagtgtttttgacaaactactgacacaccataaccaa
aactcaaagtataaattaacaaactcaagccaaaacaacataaagcaaac
actgggtcctggaggctgactggaaggttaaacacgaacaagcccgcagc
ttatcatactcttccccaaactacactgttctccagttactccctctcaa
aacctaacaaacattttccaattccaaatgtcttgtctaaacatgacaag
agatacatttgcaagccacctgagtcctgtccaaaatatcacctgaagac
taagaatgcttaaagtgttcaatgttacattatttactgggctatgtttt
ataggagaccctaaccttgcttgctttttcttcttaatcaggtgatctca
ttatatcatgccttcaataaccatctccatgcaaataacttttacattat
atctgagttttagactcacatcctgtactttttactatgcatttcagtga
atatattaaataaacctctaatttaccatatcctgtaccaaacttgggga
ctttctcatcttttcctctctgatgttcatgtctaaacaaaatatgtcac
tacctttcaaattgtccaagtgagatacttgaggctaattacatgtgatt
tttacactttcacgtctgtatgctgaaatttaaataatgaaactatttgc
taagtatcgttcttttcaatgtcctattagtgggtggccatttctgaatt
ctgctttttgaagtttaacaaataaaatcctgatcagaaaaaaaaaaaaa
aaggtatctttttctgctggtgagcaccctagtccaaatcatcagcattt
ccctttgaacctacctgtaagcactcacacacacgtggtagtacgttttg
ttgctgttgggttttgggattggttttttcttaaacaagcattagacatt
gttaatattttaatgtccttttatgtgcatttctcagtgttctttaaaca
atgggcccatgactcagaccaacatgagccacagcagcttttgacagttt
ttgctcattccacaaaacaacaaacgaacgcaccaacaaataaacaacgg
aacctgctgaactgctgagagatgtcttaccttggttaccaaga

gaattccagcccagactggtatacataacaaattcaaggccagccagggc
tgcacagtgagagcgtgtctaaacataaaataaaaagaatgaagttgccg
ggcgtggtggcgcacacctttaatcccagcactcgggaggcagaggcagg
cggatttctgagtttgaggccagcctggtctacagagtgagttccagaac
agccagggctacacagagaaaccctgtctcgaaaacccaataaataaata
aataaataaataaataaataaaatgaagttaatcatttttataacaatca
tccaaaatttgttttgtgactagaaagcaaaaccttcggggtcattctat
cctagaaatattcatcttcttccccaacagaactttagtaacctaccggc
acattcaggaattaaggtttacatagtgatcaggggggctgcatagtgaa
actaagacaaaaaccaaatgaaaaagaaaggaaagaaaactgttatctaa
tagaaaggtggtcaaaatggttaatgagcaaaggaaaatgtgtttaatac
ttaaagagatgtaaaggcagagctgacaatacagcttttcacctgtggtt
ttcttgtttgagatggaatggggaagagtctctttatgtggcttagactg
gccttgaactcacagagatcctccttcttcagccccctacatgctggagt
gacatgcatgtgacttacgtgtcccgcacagctaagcatgcttggtatta
tgcttacctaaaaagcacaaactctgtaggaagagaagattagtaaaaac
atttttggcagaaataaattctccagaatagtttattggtatataaccat
tgcacatcgaaccaggaaattagaaaaaaatctaactgttgttcattata
ggagttacaaatagtttatggtagaaacaattcgatagaataacatactg
tcattaccaggttattatttggaagttagttattttgacagaagaagtgt
gtatagatatacaacaggttttttaacacagccttatgctaaaagcacat
gattaatattaataaatcttctgaaactaagcaagttaagaagattgcag
cagctgggttatcatgttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54116830_54118048
seq2: B6Ng01-211P03.b_46_1239 (reverse)

seq1  TCTTGGTAACCAA-GTAAGCAATCTCTCAGCAGGTCCAGCAAGTTTCCGT  49
      ||||||||||||| |||||  ||||||||||| || |||| || ||||||
seq2  TCTTGGTAACCAAGGTAAGACATCTCTCAGCA-GTTCAGC-AGGTTCCGT  48

seq1  TTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTG  99
      | ||       | |||||         |  ||  ||  |||||| |||||
seq2  TGTT-------TATTTGT---------TGGTGCGTTCGTTTGTTGTTTTG  82

seq1  TGGAATGGAGCAAAAAACTGTCCAAAAAGCTGCTGT-GCTCATGGTTGGG  148
      |||||| |||| ||||||||||  |||||||||||| |||||||  | ||
seq2  TGGAAT-GAGC-AAAAACTGTC--AAAAGCTGCTGTGGCTCATG--TTGG  126

seq1  TCTGAGTCATGGGCCCA-TGTTTAAAGAACACTGGAGAAATGGCACATAA  197
      ||||||||||||||||| ||||||||||||||| ||||||| ||||||||
seq2  TCTGAGTCATGGGCCCATTGTTTAAAGAACACT-GAGAAAT-GCACATAA  174

seq1  AAGGACATTAAAATATTTAACAATGGTTCTAATGCTTGTTTAAGAAAAAA  247
      ||||||||||||||| |||||||||  |||||||||||||||||||||||
seq2  AAGGACATTAAAATA-TTAACAATG--TCTAATGCTTGTTTAAGAAAAAA  221

seq1  CCAATCC--AAAACCAACAGCAACAAAACGTACTACCACCGTGTGTGTGA  295
      |||||||  ||| ||||||||||||||||||||||||| |||||||||||
seq2  CCAATCCCAAAACCCAACAGCAACAAAACGTACTACCA-CGTGTGTGTGA  270

seq1  GTGCTTACAGGTAGGTTCAAAGGGAAATGCTGATGATTTGGACTAGGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTACAGGTAGGTTCAAAGGGAAATGCTGATGATTTGGACTAGGGTG  320

seq1  CTCACCAGCAGAAAAAGATACCTTTTTTTTTTTTTTTCTGATCAGGATTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGCAGAAAAAGATACCTTTTTTTTTTTTTTTCTGATCAGGATTT  370

seq1  TATTTGTTAAACTTCAAAAAGCAGAATTCAGAAATGGCCACCCACTAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTAAACTTCAAAAAGCAGAATTCAGAAATGGCCACCCACTAATA  420

seq1  GGACATTGAAAAGAACGATACTTAGCAAATAGTTTCATTATTTAAATTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGAAAAGAACGATACTTAGCAAATAGTTTCATTATTTAAATTTC  470

seq1  AGCATACAGACGTGAAAGTGTAAAAATCACATGTAATTAGCCTCAAGTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACAGACGTGAAAGTGTAAAAATCACATGTAATTAGCCTCAAGTAT  520

seq1  CTCACTTGGACAATTTGAAAGGTAGTGACATATTTTGTTTAGACATGAAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGGACAATTTGAAAGGTAGTGACATATTTTGTTTAGACATGAAC  570

seq1  ATCAGAGAGGAAAAGATGAGAAAGTCCCCAAGTTTGGTACAGGATATGGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAGGAAAAGATGAGAAAGTCCCCAAGTTTGGTACAGGATATGGT  620

seq1  AAATTAGAGGTTTATTTAATATATTCACTGAAATGCATAGTAAAAAGTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAGGTTTATTTAATATATTCACTGAAATGCATAGTAAAAAGTAC  670

seq1  AGGATGTGAGTCTAAAACTCAGATATAATGTAAAAGTTATTTGCATGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGAGTCTAAAACTCAGATATAATGTAAAAGTTATTTGCATGGAG  720

seq1  ATGGTTATTGAAGGCATGATATAATGAGATCACCTGATTAAGAAGAAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTGAAGGCATGATATAATGAGATCACCTGATTAAGAAGAAAAA  770

seq1  GCAAGCAAGGTTAGGGTCTCCTATAAAACATAGCCCAGTAAATAATGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAAGGTTAGGGTCTCCTATAAAACATAGCCCAGTAAATAATGTAA  820

seq1  CATTGAACACTTTAAGCATTCTTAGTCTTCAGGTGATATTTTGGACAGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACACTTTAAGCATTCTTAGTCTTCAGGTGATATTTTGGACAGGA  870

seq1  CTCAGGTGGCTTGCAAATGTATCTCTTGTCATGTTTAGACAAGACATTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGGCTTGCAAATGTATCTCTTGTCATGTTTAGACAAGACATTTG  920

seq1  GAATTGGAAAATGTTTGTTAGGTTTTGAGAGGGAGTAACTGGAGAACAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAAAATGTTTGTTAGGTTTTGAGAGGGAGTAACTGGAGAACAGT  970

seq1  GTAGTTTGGGGAAGAGTATGATAAGCTGCGGGCTTGTTCGTGTTTAACCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGGGGAAGAGTATGATAAGCTGCGGGCTTGTTCGTGTTTAACCT  1020

seq1  TCCAGTCAGCCTCCAGGACCCAGTGTTTGCTTTATGTTGTTTTGGCTTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCAGCCTCCAGGACCCAGTGTTTGCTTTATGTTGTTTTGGCTTGA  1070

seq1  GTTTGTTAATTTATACTTTGAGTTTTGGTTATGGTGTGTCAGTAGTTTGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAATTTATACTTTGAGTTTTGGTTATGGTGTGTCAGTAGTTTGT  1120

seq1  CAAAAACACTAACCTTTTTTGTAATAACTTATTTTACTTAGTAACACATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACTAACCTTTTTTGTAATAACTTATTTTACTTAGTAACACATT  1170

seq1  ACTTTGAAACATATCATTGAATTC  1219
      ||||||||||||||||||||||||
seq2  ACTTTGAAACATATCATTGAATTC  1194


seq1: chr18_53920920_53922024
seq2: B6Ng01-211P03.g_66_1187

seq1  GAATTCCAGCCCAGACTGGTATACATAACAAATTCAAGGCCAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCAGACTGGTATACATAACAAATTCAAGGCCAGCCAGGGC  50

seq1  TGCACAGTGAGAGCGTGTCTAAACATAAAATAAAAAGAATGAAGTTGCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGAGAGCGTGTCTAAACATAAAATAAAAAGAATGAAGTTGCCG  100

seq1  GGCGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  150

seq1  CGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAAC  200

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAACCCAATAAATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAACCCAATAAATAAATA  250

seq1  AATAAATAAATAAATAAATAAAATGAAGTTAATCATTTTTATAACAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAAATGAAGTTAATCATTTTTATAACAATCA  300

seq1  TCCAAAATTTGTTTTGTGACTAGAAAGCAAAACCTTCGGGGTCATTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTTGTTTTGTGACTAGAAAGCAAAACCTTCGGGGTCATTCTAT  350

seq1  CCTAGAAATATTCATCTTCTTCCCCAACAGAACTTTAGTAACCTACCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAATATTCATCTTCTTCCCCAACAGAACTTTAGTAACCTACCGGC  400

seq1  ACATTCAGGAATTAAGGTTTACATAGTGATCAGGGGGGCTGCATAGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGGAATTAAGGTTTACATAGTGATCAGGGGGGCTGCATAGTGAA  450

seq1  ACTAAGACAAAAACCAAATGAAAAAGAAAGGAAAGAAAACTGTTATCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACAAAAACCAAATGAAAAAGAAAGGAAAGAAAACTGTTATCTAA  500

seq1  TAGAAAGGTGGTCAAAATGGTTAATGAGCAAAGGAAAATGTGTTTAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGTGGTCAAAATGGTTAATGAGCAAAGGAAAATGTGTTTAATAC  550

seq1  TTAAAGAGATGTAAAGGCAGAGCTGACAATACAGCTTTTCACCTGTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGATGTAAAGGCAGAGCTGACAATACAGCTTTTCACCTGTGGTT  600

seq1  TTCTTGTTTGAGATGGAATGGGGAAGAGTCTCTTTATGTGGCTTAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTGAGATGGAATGGGGAAGAGTCTCTTTATGTGGCTTAGACTG  650

seq1  GCCTTGAACTCACAGAGATCCTCCTTCTTCAGCCCCCTACATGCTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAACTCACAGAGATCCTCCTTCTTCAGCCCCCTACATGCTGGAGT  700

seq1  GACATGCATGTGACTTACGTGTCCCGCACAGCTAAGCATGCTTGGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCATGTGACTTACGTGTCCCGCACAGCTAAGCATGCTTGGTATTA  750

seq1  TGCTTACCTAAAAAGCACAAACTCTGTAGGAAGAGAAGATTAGTAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACCTAAAAAGCACAAACTCTGTAGGAAGAGAAGATTAGTAAAAAC  800

seq1  A-TTTTGGCAG-AATAAATTCTCCAGAATAGTTTATTGGTATATAACCAT  848
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGCAGAAATAAATTCTCCAGAATAGTTTATTGGTATATAACCAT  850

seq1  TGCACATCGAACCAGGAAATTAGAAAAAAATCTAACTGTTGTTCATTATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATCGAACCAGGAAATTAGAAAAAAATCTAACTGTTGTTCATTATA  900

seq1  GGAGTTACAAATAGTTTATGGTAG-AACCATTCGATAGAATAACATACTG  947
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  GGAGTTACAAATAGTTTATGGTAGAAACAATTCGATAGAATAACATACTG  950

seq1  TCATTA-CAAGTTA-TATTTGG-AGTTAGT--ATTTGACAG-AGAAGTGT  991
      |||||| || |||| ||||||| |||||||   |||||||| ||||||||
seq2  TCATTACCAGGTTATTATTTGGAAGTTAGTTATTTTGACAGAAGAAGTGT  1000

seq1  GTATAGATATAACACAGGTTTTTAAACACAG-CTTATGCTAAAA-CACAT  1039
      |||||||||||  |||||||||| ||||||| |||||||||||| |||||
seq2  GTATAGATATACAACAGGTTTTTTAACACAGCCTTATGCTAAAAGCACAT  1050

seq1  --ATAATATT-ATAATTC-TCTGAACCT-AGC-AGTTAAAGAGATGCCAG  1083
         ||||||| |||| || |||||| || ||| ||||||  ||||  |||
seq2  GATTAATATTAATAAATCTTCTGAAACTAAGCAAGTTAAGAAGATTGCAG  1100

seq1  GAAGCGTGTTACCATGTTATTT  1105
       |   | |||| ||||||||||
seq2  CAGCTGGGTTATCATGTTATTT  1122


| Home | SequenceCutter | Blast | Download |