BAC Information

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BAC

Clone NameB6Ng01-212L23
Chromosome18 (Build37)
Map Location 77,831,680 - 77,965,908
singlet/doubletdoublet
Overlap gene8030462N17Rik, 4930465K10Rik
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165
Downstream geneCcdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212L23.bB6Ng01-212L23.g
ACCGA030468GA030469
length1,173703
definitionB6Ng01-212L23.b B6Ng01-212L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,964,752 - 77,965,908)(77,831,680 - 77,832,382)
sequence
gaattcatccaggagatggggtttttactatcccattaaagaaaacctta
taagccgggcgtggtggcacacgcctttaatcccagcactcataggcagg
cagatttctgagttcgaggccagcctggtctacaaagtgagttccaggac
agccagggctatacagagaaaccctgtctcaccccccccctcccgaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagcttaggcccc
caagggcaggcttcctctgacacattttatgcattcttcaggctgacctg
caatctgtgggtgtgggttctctctgcttacagggaatggggctggcttg
agcactaactctctggcttttctggtctattatacttttgtcaagcccgt
gtaaacgttcatggcttttcaatgcctgtccttgctctgaaatatcgaca
tggagacctggtatttttattgatgagcttcatgcgctatagcgggcaga
ttctgagctattgtaacccgactatgctggtctgacctactttccaagca
catggagatacctgccatgtggtgtctccttggccttcttcatggtacct
cgtctgacctcctggtgaattgcttccctcgttttccacccgggacctgc
cccccagtggaattggaagccccaccttattctgtcctgcctagcttctg
gctgatcagaggtgaaggaaaacattttttacgcaacatttagacaggag
ttatttgacaatgccagcattgggactgtaaccagatctctgggcagagt
gatcagcactgaacacacagtgcacaaaaccatccccgcaacgataccag
acttcactcggagaagcctgcatgtcattccaggaagggacttggagatg
tttttctcttgagcccgtgcttttgtcctttggatggcttgaactaacaa
ggagaaagctccaggatggaaacaaaaggccagtaggtatgcctggacta
cattggtgcatactccattatccccagcactggggagatgcagatggcaa
tgactcaggagttcaaggcagcctgttcttatacaagacctagcctcacg
attgggcgtagtggcgcatgcatttataacaggcactcggtaagaaattc
tttttttttctctttcaaagatt
gaattcccctcctataataggtaggtcttctcacctcaattaatgtaaaa
caatcccctatagacttgcccagaggcccttctccaagatgattctagac
tctggtagaacagatagttaacattaaccaccattggaggtgaggtggca
gtcagtgtttgtaccaatcagtaggcacagctcttcatgcaaatgaagga
ttgtgcctgcaccaatcacaaaccttcttctgagtaaagggaaggaggtg
tttgcaccaatcattatgcatggttcttcatgcaaatgaaggattgtgcc
tgcaccaatcacaggccctctgctgggaaagggagggaggtgttcgcatc
aatcaacatgcatggttctttatgcaaatgaaggattgtgcctgcaccaa
tcacaggccctctgcgggggttgagggagcctcacctctagcacaggtga
aaacacaggtaaaaatggccattatgcttgtgataacaaaatgcagacac
aaactggaacatctgtggctgggtctgtgctttgggagtcagtgctgccg
ctcaccaacaagtagctgtaattgtaacaaaacttcctccagtcatccat
gcaatgttcaaactcccagtccctgtgccgaaacttccgagttgcctctg
catctgagctctaataattaaaatttctgtccacatgcgtaaagttgaac
tcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77964752_77965908
seq2: B6Ng01-212L23.b_44_1216 (reverse)

seq1  AATCTTT--AAAAAAAAAAAAAAGAA-ATCCTCCCGAGTGCTGGTATTAA  47
      |||||||  || | ||||||||||||  || | ||||||||  ||  |||
seq2  AATCTTTGAAAGAGAAAAAAAAAGAATTTCTTACCGAGTGCCTGTTATAA  50

seq1  AGGCATGCGCCACTACTGCCTATCGTTGAGCTAGGGTCTTGTAT-AGGCC  96
      | ||||||||||||||  || |||||   |||| |||||||||| ||  |
seq2  ATGCATGCGCCACTACGCCCAATCGTGAGGCTA-GGTCTTGTATAAGAAC  99

seq1  AGGCTGGCCTTGAACTCTTGGTTC--TTCTATCTGCATCTCCCCAGTGCT  144
      ||||| ||||||||||| ||  ||  | | ||||||||||||||||||||
seq2  AGGCT-GCCTTGAACTCCTGAGTCATTGCCATCTGCATCTCCCCAGTGCT  148

seq1  GGGG-TTATGG-GTATGCACCATTGT-GTCCAG--CTTCCT-CTGGCCTT  188
      |||| | |||| |||||||||| ||| ||||||   | ||| ||||||||
seq2  GGGGATAATGGAGTATGCACCAATGTAGTCCAGGCATACCTACTGGCCTT  198

seq1  TTGTTTCCAT-CTGG-GCTTTCTTCCTTGCTAGTTCAAGCCA-CCAAAGG  235
      |||||||||| |||| |||||| |||||| |||||||||||| |||||||
seq2  TTGTTTCCATCCTGGAGCTTTC-TCCTTGTTAGTTCAAGCCATCCAAAGG  247

seq1  AC-AAAGCACCGGCTCAAGAGAAAAACATCTCCAAGTCCC-TCCTGGACT  283
      || ||||||| ||||||||||||||||||||||||||||| ||||||| |
seq2  ACAAAAGCACGGGCTCAAGAGAAAAACATCTCCAAGTCCCTTCCTGGAAT  297

seq1  GACCTGCAGGCTTCCCCGAGTGAAGTCTGGT-TCGTTG-GGGGATGGTTT  331
      ||| |||||||||| |||||||||||||||| |||||| |||||||||||
seq2  GACATGCAGGCTTCTCCGAGTGAAGTCTGGTATCGTTGCGGGGATGGTTT  347

seq1  TGTGCACTGTGTGTTCAGTGCTGATCACTCTGCCCAGAGATCTGGTTACA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGTGTGTTCAGTGCTGATCACTCTGCCCAGAGATCTGGTTACA  397

seq1  GTCCCAATGCTGGCATTGTCAAATAACTCCTGTCTAAATGTTGTGTAAAA  431
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTCCCAATGCTGGCATTGTCAAATAACTCCTGTCTAAATGTTGCGTAAAA  447

seq1  AATGTTTTCCTTCACCTCTGATCAGCCAGAAGCTAGGCAGGAAAGAATAA  481
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATGTTTTCCTTCACCTCTGATCAGCCAGAAGCTAGGCAGGACAGAATAA  497

seq1  GGTGGGGCTTCCAATTCCACTGGGGGGCAGGTCCCGGGTGGAAAAAGAGG  531
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTGGGGCTTCCAATTCCACTGGGGGGCAGGTCCCGGGTGGAAAACGAGG  547

seq1  GAAGCAATTCACCAGGAGGTCAGATGAGGTACCATGAAGAAGGCCAAGGA  581
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGCAATTCACCAGGAGGTCAGACGAGGTACCATGAAGAAGGCCAAGGA  597

seq1  GACACCACATGGCAGGTATCTCCATGTGCTTGGAAAGTAGGTCAGACCAG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACATGGCAGGTATCTCCATGTGCTTGGAAAGTAGGTCAGACCAG  647

seq1  CATAGTCGGGTTACAATAGCTCAGAATCTGCCCGCTATAGCGCATGAAGC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCGGGTTACAATAGCTCAGAATCTGCCCGCTATAGCGCATGAAGC  697

seq1  TCATCAATAAAAATACCAGGTCTCCATGTCGATATTTCAGAGCAAGGACA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATAAAAATACCAGGTCTCCATGTCGATATTTCAGAGCAAGGACA  747

seq1  GGCATTGAAAAGCCATGAACGTTTACACGGGCTTGACAAAAGTATAATAG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGAAAAGCCATGAACGTTTACACGGGCTTGACAAAAGTATAATAG  797

seq1  ACCAGAAAAGCCAGAGAGTTAGTGCTCAAGCCAGCCCCATTCCCTGTAAG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAAGCCAGAGAGTTAGTGCTCAAGCCAGCCCCATTCCCTGTAAG  847

seq1  CAGAGAGAACCCACACCCACAGATTGCAGGTCAGACTGAAGAATGCATAA  881
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGAGAGAACCCACACCCACAGATTGCAGGTCAGCCTGAAGAATGCATAA  897

seq1  AATGTGTCAGAGGAAGCCTGCCCTTGGGGGCCTAAGCTTTTCTTTTCTTT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCAGAGGAAGCCTGCCCTTGGGGGCCTAAGCTTTTCTTTTCTTT  947

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCGGGAGGGGGGGGGTGAGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCGGGAGGGGGGGGGTGAGA  997

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  1047

seq1  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGAGTGCTGGGATTAA  1081
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTATGAGTGCTGGGATTAA  1097

seq1  AGGCGTGTGCCACCACGCCCGGCTTCTAAGGTTTTCTTTAATGGGATAGT  1131
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGCGTGTGCCACCACGCCCGGCTTATAAGGTTTTCTTTAATGGGATAGT  1147

seq1  AAAAACCCCATCTCCTGGATGAATTC  1157
      ||||||||||||||||||||||||||
seq2  AAAAACCCCATCTCCTGGATGAATTC  1173

seq1: chr18_77831680_77832382
seq2: B6Ng01-212L23.g_64_766

seq1  GAATTCCCCTCCTATAATAGGTAGGTCTTCTCACCTCAATTAATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCCTATAATAGGTAGGTCTTCTCACCTCAATTAATGTAAAA  50

seq1  CAATCCCCTATAGACTTGCCCAGAGGCCCTTCTCCAAGATGATTCTAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTATAGACTTGCCCAGAGGCCCTTCTCCAAGATGATTCTAGAC  100

seq1  TCTGGTAGAACAGATAGTTAACATTAACCACCATTGGAGGTGAGGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGAACAGATAGTTAACATTAACCACCATTGGAGGTGAGGTGGCA  150

seq1  GTCAGTGTTTGTACCAATCAGTAGGCACAGCTCTTCATGCAAATGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTTTGTACCAATCAGTAGGCACAGCTCTTCATGCAAATGAAGGA  200

seq1  TTGTGCCTGCACCAATCACAAGCCTTCTTCTGAGTAAAGGGAAGGAGGTG  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTGCCTGCACCAATCACAAACCTTCTTCTGAGTAAAGGGAAGGAGGTG  250

seq1  TTTGCACCAATCAGTATGCATGGTTCTTCATGCAAATGAAGGATTGTGCC  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCAATCATTATGCATGGTTCTTCATGCAAATGAAGGATTGTGCC  300

seq1  TGCACCAATCACAGGCCCTCTGCTGGGTAAGGGAGGGAGGTGTTCGCATC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCACCAATCACAGGCCCTCTGCTGGGAAAGGGAGGGAGGTGTTCGCATC  350

seq1  AATCAGCATGCATGGCTCTTTATGCAAATGAAGGATTGTGCCTGCACCAA  400
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATCAACATGCATGGTTCTTTATGCAAATGAAGGATTGTGCCTGCACCAA  400

seq1  TCACAGGCCCTCTGCGGGGGTTGAGGGAGCCTCACCTCTAGCACAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCCCTCTGCGGGGGTTGAGGGAGCCTCACCTCTAGCACAGGTGA  450

seq1  AAACACAGGTAAAAATGGCCATTAGGCTTGTGATAACAAAATGCAGACAC  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACACAGGTAAAAATGGCCATTATGCTTGTGATAACAAAATGCAGACAC  500

seq1  AAACTGGAACATCTGTGGCTGGGTCTGTGCTTTGGGAGTCAGTGCTACAG  550
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  AAACTGGAACATCTGTGGCTGGGTCTGTGCTTTGGGAGTCAGTGCTGCCG  550

seq1  CTCAGCAGCAAGTAGCTGTAGTTGTAACAAAACTTCCTCAAGTCATCCAT  600
      |||| || |||||||||||| |||||||||||||||||| ||||||||||
seq2  CTCACCAACAAGTAGCTGTAATTGTAACAAAACTTCCTCCAGTCATCCAT  600

seq1  GCAATGTTCAAACTCCAAGTCCCTGTGCCTCAAACTTCCGAGTTGCCTCT  650
      |||||||||||||||| ||||||||||||  |||||||||||||||||||
seq2  GCAATGTTCAAACTCCCAGTCCCTGTGCC-GAAACTTCCGAGTTGCCTCT  649

seq1  GCATCTG-GCTCTTATAATTAGTATTTCTGTCAGCATGGGTAAAGTTGAG  699
      ||||||| ||||| |||||||  |||||||||  |||| |||||||||| 
seq2  GCATCTGAGCTCTAATAATTAAAATTTCTGTCCACATGCGTAAAGTTGAA  699

seq1  CTCC  703
      ||||
seq2  CTCC  703