BAC Information

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BAC

Clone NameB6Ng01-213K21
Chromosome18 (Build37)
Map Location 45,305,110 - 45,306,299
singlet/doubletsinglet
Overlap geneLOC225457
Upstream geneLOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309
Downstream geneLOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213K21.bB6Ng01-213K21.g
ACCGA031134GA031135
length1,2261,180
definitionB6Ng01-213K21.b B6Ng01-213K21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctcaaattcctctgaaatctgaacatgtccattgactttgg
tgctaacctcttaaactcagcacgagggtttgggttaaaatcaaatatta
ttgcctctctgacatttggtattcctcagttgagaattctttgtttagct
ctataccccatttttaatggggttatttgaatggctgagacgcacctgaa
aaaatgttcaatatccttaatcatcaggtaaatgcaactcaaaacaaccc
tgagattccaccttacaccagtcagaatggctaagataaaaaattcatgt
gacagcagatgctggcaaggatgtggagaaagaggaacactcctccattg
ttggtgggattgcaagcttgtacaaccactctggaaatcagtctggtggt
tcctcagaaaattgaacatagtactactggaagatccagcaatacctttc
ctgggcatatacccagatgttccaactggtaagaaggacacatgctccta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgtccctcaacagagaaatgaatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaattatgaaattcttagacaa
atggatagatctggaggatatcattcttagtgaggtaacccaatcacaaa
agaagtcactagatatgcactcactgataagtggatattagcccagaaac
ttagaatacccaagatacaatttgcaaaacacatgaaaatcaaaaagaag
gaagtgttcctccttagagtggggaacaaaatacccatggaaggaattac
agagacaatggttggagctgagacagaaggaaggaccatccagagactgc
cccatcagggacccatcccataagcatccaccaaacacagacactattgc
atatgccagcaagattttgctgacaggaccctgatatagttgtctctgtg
aggctatgccagtgcctggcaaatacagaagtgatgctcatagtcattct
ttttggatggaacacagctcccaatagaaggagctaagaggaaagttcct
atgagcctgacgggtcttccaaccctttacgaaaaaaaacatatgactac
tagtacccgaactctagttcctagctgcatatgtagccagaaagtaggcc
tatgattgcggcaccatcatacgttg
gaattctcctcacatgactccattcttacaccatgttccattatgctatt
atgtggaagtgtaagatgaaataaacccagttatcctcaagttgcttttg
gtcattctgtttatcacagcagtgtttgctatttatcacatgaagacaga
aatagggccgatccagatggaggagaagatgggaaggaacttagaggatt
aggcggaggagaaaccataatcaggatatattgtgtgagaaaataatgta
ttttctttctttttttttttccttaccctcaagcctttgtttttttcttt
ctcacttccacacaacagaaatggtgtggtacagaactgaggggaaaaaa
ttggcagtctttgacttttttttttagtggggaaggaggacacaaaagac
aacagagttggggcctaaaccctatgccttttgctgctagcattctctca
tggagctacatccccagtgtctgctggatctttgatcaagtctcacctgt
ggcttggggtaacacagaaaaacaatttcactccagtccccaagaattaa
atctttttggcatcggacaaccagtcgtattgcacagttcagcagttaca
gggaaaacaccacctattatacagacatgtggcaggggacaggccaaatc
ttgctcagggcttctggttaaaaccgcagcaagttttctgggagttggca
actgaaagtaacttctagaaatgaacaggcacccaggggactctggaaag
cacttaaatttctggtcttcacaggaatctttatccgggggcctctttct
tggccactgaaaagcgtctttttctggaccaaaggagagggatgtgttga
tcactggtcaggctggagggtgtcaggaggttcaagagaacaccactaga
ggaagtcaagtcattcgcagaccaatggtttcaaaggtctagaaaggaaa
ggttgcttgggctggattctttcccctctttttcttcgattaaatacgaa
agccacaagacgagatacgagaatacagttggttggctttcgtatttatt
cggggtaaaaaagatgaagatatcggtaaaggacgacaaaaaagtggcat
ctcggttatcgttccagcgatcctgttgccttgattctggcttggcagct
tcccttcgccagaagccataatcgctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45305110_45306299
seq2: B6Ng01-213K21.g_67_1246

seq1  GAATTCTCCTCACATGACTCCATTCTTACACCATGTTCCATTATGCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCACATGACTCCATTCTTACACCATGTTCCATTATGCTATT  50

seq1  ATGTGGAAGTGTAAGATGAAATAAACCCAGTTATCCTCAAGTTGCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGTGTAAGATGAAATAAACCCAGTTATCCTCAAGTTGCTTTTG  100

seq1  GTCATTCTGTTTATCACAGCAGTGTTTGCTATTTATCACATGAAGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTGTTTATCACAGCAGTGTTTGCTATTTATCACATGAAGACAGA  150

seq1  AATAGGGCCGATCCAGATGGAGGAGAAGATGGGAAGGAACTTAGAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCCGATCCAGATGGAGGAGAAGATGGGAAGGAACTTAGAGGATT  200

seq1  AGGCGGAGGAGAAACCATAATCAGGATATATTGTGTGAGAAAATAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGAGGAGAAACCATAATCAGGATATATTGTGTGAGAAAATAATGTA  250

seq1  TTTTCTTTCTTTTTTTTTTTCCTTACCCTCAAGCCTTTGTTTTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTTTTTTTTTTTCCTTACCCTCAAGCCTTTGTTTTTTTCTTT  300

seq1  CTCACTTCCACACAACAGAAATGGTGTGGTACAGAACTGAGGGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCCACACAACAGAAATGGTGTGGTACAGAACTGAGGGGAAAAAA  350

seq1  TTGGCAGTCTTTGACTTTTTTTTTTAGTGGGGAAGGAGGACACAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTCTTTGACTTTTTTTTTTAGTGGGGAAGGAGGACACAAAAGAC  400

seq1  AACAGAGTTGGGGCCTAAACCCTATGCCTTTTGCTGCTAGCATTCTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTTGGGGCCTAAACCCTATGCCTTTTGCTGCTAGCATTCTCTCA  450

seq1  TGGAGCTACATCCCCAGTGTCTGCTGGATCTTTGATCAAGTCTCACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTACATCCCCAGTGTCTGCTGGATCTTTGATCAAGTCTCACCTGT  500

seq1  GGCTTGGGGTAACACAGAAAAACAATTTCACTCCAGTCCCCAAGAATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGTAACACAGAAAAACAATTTCACTCCAGTCCCCAAGAATTAA  550

seq1  ATCTTTTTGGCATCGGACAACCAGTCGTATTGCACAGTTCAGCAGTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTGGCATCGGACAACCAGTCGTATTGCACAGTTCAGCAGTTACA  600

seq1  GGGAAAACACCACCTATTATACAGACATGTGGCAGGGGACAGGCCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACACCACCTATTATACAGACATGTGGCAGGGGACAGGCCAAATC  650

seq1  TTGCTCAGGGCTTCTGGTTAAAACCGCAGCAAGTTTTCTGGGAGTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGGCTTCTGGTTAAAACCGCAGCAAGTTTTCTGGGAGTTGGCA  700

seq1  ACTGAAAGTAACTTCTAGAAATGAACAGGCACCCAGGGGACTCTGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGTAACTTCTAGAAATGAACAGGCACCCAGGGGACTCTGGAAAG  750

seq1  CACTTAAATTTCTGGTCTTCACAGGAATCTTTATCCGGGGGCCTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAATTTCTGGTCTTCACAGGAATCTTTATCCGGGGGCCTCTTTCT  800

seq1  TGGCCACTGAAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGAAAAGCGTCTTTTTCTGGACCAAAGGAGAGGGATGTGTTGA  850

seq1  TCACTGGTCAGGCTGGAGGGTGTCAGGAGGGTCAAGAGAACACCACTAGA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCACTGGTCAGGCTGGAGGGTGTCAGGAGGTTCAAGAGAACACCACTAGA  900

seq1  GGAAGTCAAGTCAATCGCAGACCAATGG-TTCAAAGGTCTAGAAAGG-AA  948
      ||||||||||||| |||||||||||||| |||||||||||||||||| ||
seq2  GGAAGTCAAGTCATTCGCAGACCAATGGTTTCAAAGGTCTAGAAAGGAAA  950

seq1  GGTTGCTTGGGCTGGATCCTTTCCCCTCCTTTTCTCCGATTAAATACGAA  998
      ||||||||||||||||| |||||||||| |||||| ||||||||||||||
seq2  GGTTGCTTGGGCTGGATTCTTTCCCCTCTTTTTCTTCGATTAAATACGAA  1000

seq1  AGCCAACAAAGACGAAGATACGAAGATACAGTT-GTTGGCTTTCGTATTT  1047
      |||||   |||||| ||||||||  |||||||| ||||||||||||||||
seq2  AGCCA--CAAGACG-AGATACGAGAATACAGTTGGTTGGCTTTCGTATTT  1047

seq1  AATCGGGGGGAAAAAAAGATGAAGATACGGGAAAAGGACGACAAAGAAAG  1097
      | ||  |||| ||||||||||||||||  || ||||||||||||| ||||
seq2  ATTC--GGGGTAAAAAAGATGAAGATATCGGTAAAGGACGACAAA-AAAG  1094

seq1  TGGCATCTCGTGTATCGTCCCAGCGGAGCCCCTTGTTGGCCTGGTTCTCC  1147
      ||||||||||  |||||| ||||| || ||   ||||| | || ||||  
seq2  TGGCATCTCGGTTATCGTTCCAGC-GATCC---TGTTGCCTTGATTCT--  1138

seq1  TGCTTTTTGCGAAGGGCTTCCCTCCG-CAGAAGCCAT----TCTCTCT  1190
       ||  || ||     |||||||| || ||||||||||     ||||||
seq2  GGC--TTGGC----AGCTTCCCTTCGCCAGAAGCCATAATCGCTCTCT  1180