BAC Information

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BAC

Clone NameB6Ng01-213L13
Chromosome18 (Build37)
Map Location 88,687,876 - 88,855,241
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213L13.bB6Ng01-213L13.g
ACCGA031164GA031165
length1,1171,113
definitionB6Ng01-213L13.b B6Ng01-213L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,854,116 - 88,855,241)(88,687,876 - 88,688,980)
sequence
gaattctttcctctccttttaaatgatggtttcttttgtaggcataagag
aatgctcttcatggggttttgctgacaaagctcctatcgccttccagtga
gactcagctttgtttatttatgtgactgctgtaaaagcaagcatggggtg
atctaaaaaagcctgcatctccatgagttaatgaaagagccagaaggatt
cttgtgtgtatgtgtcaaaaaaaaaaaaaggtgcatgataaatgaaggac
tttctgtgttcaaagtctacattggggcctatgtacaattgaatgataag
gcttgcattattattatacaggaagtataattcaatagtgtattcccctt
tgggagatcctttagtgtatttaatatttaaaacataaaatgcacttaga
tattattgaggtagtgacattagtacaaattatgtttcttccatttgtag
cttctgacagaataactataagcacaaaaattctgtaagatgcaggccag
caaagaagtatatgggaggcagaggagacagaatgctcccactggctgtc
tgactcttgggaaatgattgttcagaatacactgacacacacaagcattg
tttttctccaagactattatttggcagctatttttttggtctatcctctc
ctttctgatcatatgcattgagaaaaactttacttgttttgacaaaattt
gtgtttgtacataaacagcattaaacagactagaagtcaagaagaaagta
tacaaaaattcgtaagttatatgatgtgagacacaaaatggcaacagctt
tttagtcaacggtttattacacagaagattagatgaaaatatggctggag
gtggtgctggttatgatcaaatgttcaaattcctctccaaatatatgcat
aatcaatgtaatattatgtttaagtaagtccttctgggacagacttgtgt
gatggggcaacaccctcctgaatggggtttatgtcttatggcagaagatt
ccagacaactgtcttgtctctttccaccatgggaagataggtagggggca
tctgcaatccaggactggctcacattgcatgcttgagctctgtacattgg
gtgagattccaatcttt

gaattcacatatatacacacacaaactaaataaaaattgtatttgtttgt
ttgtaagattttgttttgttttggtttttttttgaaacagggtttcttct
gggtggctctggctatcctggaacctgctctgtagaccagtctggccttg
aactcaaaaggccacctgcttctacctccagagttctgggattagggcca
ccaccacctggctagattaaaattttaaaagaatggaataagcaggtagt
aatctgtttaatagccattcaactaaactaccaaatacaggaaaagagat
ttctgtatttaaatggcagctttggtagctttccatgtattctcatacaa
taacatgtattctcatatggataatgtgctgcggttagctatcacagagt
ttgttggggttcttcctagacattcctgttcccttcctgactcagagtct
caccacacagtatagtttccacataaaattaaataatcatgcatcatttt
ggatggacattagcagccaccagcaatgttatctattaaggtatcttttc
tacctctgtcttggttattatattttatcatggtgcattgacagaaagag
aggatatatgctttggataaagagaacaggattaaagccaaaaaacttat
ttgctcaattttctctctcaactctcaacttttatttcctactaggtggt
agaaaggagcttgtgagaaatacctgtatttccaggtagcagacattcta
tttgtaccctggtatcttcagtacacttttcatgctaagttacactagta
gtatttctgataccaacatctggctgagtgtctttggatgtgtgtctgtg
gagtagagaatctggttcttcatgaacattaaatattttagaaaattcaa
tcttatattttatacatagaaagaaagtacaggggtgatatggaagaaag
tgaattagcttattgatttttttttctggaagaaatatgttctatgaaca
taatttgagccagcagtttagatggaccttagaagcatctcatagataga
cttatcaaacattttattaccacactttctttgtttctaaattgtggatg
tattctttagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88854116_88855241
seq2: B6Ng01-213L13.b_42_1158 (reverse)

seq1  AAAGATGGGAAATCTTCACCCAATATGTCAGGAGCTCCAGCATGCAATGT  50
      |||||| || |||| |||||||  ||||   |||||| ||||||||||||
seq2  AAAGATTGG-AATC-TCACCCA--ATGTACAGAGCTCAAGCATGCAATGT  46

seq1  GAGCCCAGTCCCTGGTTTGCAGATGGCCCCTTTAACTATCTTCCCATGGT  100
      ||| ||||| ||||| ||||||||| ||||  || |||||||||||||||
seq2  GAG-CCAGT-CCTGGATTGCAGATGCCCCC--TACCTATCTTCCCATGGT  92

seq1  GGAAAGAGACAAGACAGTTGTCTGGGATC-TCTGCAATAAAGACATTAAC  149
      ||||||||||||||||||||||||| ||| ||||| || ||||||| |||
seq2  GGAAAGAGACAAGACAGTTGTCTGGAATCTTCTGCCAT-AAGACATAAAC  141

seq1  CCCATTCAGGAGGGTGTTGCCCCATCACACAAGTCTGTCCCAGAAGGACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCAGGAGGGTGTTGCCCCATCACACAAGTCTGTCCCAGAAGGACT  191

seq1  TACTTAAACATAATATTACATTGATTATGCATATATTTGGAGAGGAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAACATAATATTACATTGATTATGCATATATTTGGAGAGGAATTT  241

seq1  GAACATTTTGATCATAACCAGCACCACCTCCAGCCATATTTTCATCTAAT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACA-TTTGATCATAACCAGCACCACCTCCAGCCATATTTTCATCTAAT  290

seq1  CTTCTGTGTAATAAACCGTTGACTAAAAAGCTGTTGCCATTTTGTGTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTAATAAACCGTTGACTAAAAAGCTGTTGCCATTTTGTGTCTC  340

seq1  ACATCATATAACTTACGAATTTTTGTATACTTTCTTCTTGACTTCTAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATATAACTTACGAATTTTTGTATACTTTCTTCTTGACTTCTAGTC  390

seq1  TGTTTAATGCTGTTTATGTACAAACACAAATTTTGTCAAAACAAGTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGCTGTTTATGTACAAACACAAATTTTGTCAAAACAAGTAAAG  440

seq1  TTTTTCTCAATGCATATGATCAGAAAGGAGAGGATAGACCAAAAAAATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATGCATATGATCAGAAAGGAGAGGATAGACCAAAAAAATAG  490

seq1  CTGCCAAATAATAGTCTTGGAGAAAAACAATGCTTGTGTGTGTCAGTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAATAATAGTCTTGGAGAAAAACAATGCTTGTGTGTGTCAGTGTA  540

seq1  TTCTGAACAATCATTTCCCAAGAGTCAGACAGCCAGTGGGAGCATTCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACAATCATTTCCCAAGAGTCAGACAGCCAGTGGGAGCATTCTGT  590

seq1  CTCCTCTGCCTCCCATATACTTCTTTGCTGGCCTGCATCTTACAGAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCCTCCCATATACTTCTTTGCTGGCCTGCATCTTACAGAATTT  640

seq1  TTGTGCTTATAGTTATTCTGTCAGAAGCTACAAATGGAAGAAACATAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTATAGTTATTCTGTCAGAAGCTACAAATGGAAGAAACATAATT  690

seq1  TGTACTAATGTCACTACCTCAATAATATCTAAGTGCATTTTATGTTTTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAATGTCACTACCTCAATAATATCTAAGTGCATTTTATGTTTTAA  740

seq1  ATATTAAATACACTAAAGGATCTCCCAAAGGGGAATACACTATTGAATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATACACTAAAGGATCTCCCAAAGGGGAATACACTATTGAATTA  790

seq1  TACTTCCTGTATAATAATAATGCAAGCCTTATCATTCAATTGTACATAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTGTATAATAATAATGCAAGCCTTATCATTCAATTGTACATAGG  840

seq1  CCCCAATGTAGACTTTGAACACAGAAAGTCCTTCATTTATCATGCACCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATGTAGACTTTGAACACAGAAAGTCCTTCATTTATCATGCACCTT  890

seq1  TTTTTTTTTTTGACACATACACACAAGAATCCTTCTGGCTCTTTCATTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTGACACATACACACAAGAATCCTTCTGGCTCTTTCATTAA  940

seq1  CTCATGGAGATGCAGGCTTTTTTAGATCACCCCATGCTTGCTTTTACAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAGATGCAGGCTTTTTTAGATCACCCCATGCTTGCTTTTACAGC  990

seq1  AGTCACATAAATAAACAAAGCTGAGTCTCACTGGAAGGCGATAGGAGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATAAATAAACAAAGCTGAGTCTCACTGGAAGGCGATAGGAGCTT  1040

seq1  TGTCAGCAAAACCCCATGAAGAGCATTCTCTTATGCCTACAAAAGAAACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAAAACCCCATGAAGAGCATTCTCTTATGCCTACAAAAGAAACC  1090

seq1  ATCATTTAAAAGGAGAGGAAAGAATTC  1126
      |||||||||||||||||||||||||||
seq2  ATCATTTAAAAGGAGAGGAAAGAATTC  1117


seq1: chr18_88687876_88688980
seq2: B6Ng01-213L13.g_67_1179

seq1  GAATTCACATATATACACACACAAACTAAATAAAAATTGTATTTGTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATATACACACACAAACTAAATAAAAATTGTATTTGTTTGT  50

seq1  TTGTAAGATTTTGTTTTGTTTTGGTTTTTTTTTGAAACAGGGTTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGATTTTGTTTTGTTTTGGTTTTTTTTTGAAACAGGGTTTCTTCT  100

seq1  GGGTGGCTCTGGCTATCCTGGAACCTGCTCTGTAGACCAGTCTGGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTCTGGCTATCCTGGAACCTGCTCTGTAGACCAGTCTGGCCTTG  150

seq1  AACTCAAAAGGCCACCTGCTTCTACCTCCAGAGTTCTGGGATTAGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAAGGCCACCTGCTTCTACCTCCAGAGTTCTGGGATTAGGGCCA  200

seq1  CCACCACCTGGCTAGATTAAAATTTTAAAAGAATGGAATAAGCAGGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCTGGCTAGATTAAAATTTTAAAAGAATGGAATAAGCAGGTAGT  250

seq1  AATCTGTTTAATAGCCATTCAACTAAACTACCAAATACAGGAAAAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTTAATAGCCATTCAACTAAACTACCAAATACAGGAAAAGAGAT  300

seq1  TTCTGTATTTAAATGGCAGCTTTGGTAGCTTTCCATGTATTCTCATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATTTAAATGGCAGCTTTGGTAGCTTTCCATGTATTCTCATACAA  350

seq1  TAACATGTATTCTCATATGGATAATGTGCTGCGGTTAGCTATCACAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTATTCTCATATGGATAATGTGCTGCGGTTAGCTATCACAGAGT  400

seq1  TTGTTGGGGTTCTTCCTAGACATTCCTGTTCCCTTCCTGACTCAGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGGTTCTTCCTAGACATTCCTGTTCCCTTCCTGACTCAGAGTCT  450

seq1  CACCACACAGTATAGTTTCCACATAAAATTAAATAATCATGCATCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACAGTATAGTTTCCACATAAAATTAAATAATCATGCATCATTTT  500

seq1  GGATGGACATTAGCAGCCACCAGCAATGTTATCTATTAAGGTATCTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACATTAGCAGCCACCAGCAATGTTATCTATTAAGGTATCTTTTC  550

seq1  TACCTCTGTCTTGGTTATTATATTTTATCATGGTGCATTGACAGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTGTCTTGGTTATTATATTTTATCATGGTGCATTGACAGAAAGAG  600

seq1  AGGATATATGCTTTGGATAAAGAGAACAGGATTAAAGCCAAAAAACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATATGCTTTGGATAAAGAGAACAGGATTAAAGCCAAAAAACTTAT  650

seq1  TTGCTCAATTTTCTCTCTCAACTCTCAACTTTTATTTCCTACTAGGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAATTTTCTCTCTCAACTCTCAACTTTTATTTCCTACTAGGTGGT  700

seq1  AGAAAGGAGCTTGTGAGAAATACCTGTATTTCCAGGTAGCAGACATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCTTGTGAGAAATACCTGTATTTCCAGGTAGCAGACATTCTA  750

seq1  TTTGTACCCTGGTATCTTCAGTACAC-TTTCATGCTAAGTTACACTAGTA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGTACCCTGGTATCTTCAGTACACTTTTCATGCTAAGTTACACTAGTA  800

seq1  GTATTTCTGATACCAACATCTGGCTGAGTGTCTTTGGATGTGTGTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCTGATACCAACATCTGGCTGAGTGTCTTTGGATGTGTGTCTGTG  850

seq1  GAGTAGAGAATCTGGTTC-TCATGAACA-TAAATATTTTAGAAAATTCAA  897
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GAGTAGAGAATCTGGTTCTTCATGAACATTAAATATTTTAGAAAATTCAA  900

seq1  TCTTATATTTTATACATAGAAAGAAAGTACAGGGGTGATATGGAAGAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATTTTATACATAGAAAGAAAGTACAGGGGTGATATGGAAGAAAG  950

seq1  TGAAATAGC-TATTGATTTTTTTTCCTGGGAAGAAATATG-TCTATGAAC  995
      |||| |||| |||||||||||||| || |||||||||||| |||||||||
seq2  TGAATTAGCTTATTGATTTTTTTTTCT-GGAAGAAATATGTTCTATGAAC  999

seq1  ATAA-TTGAGCCAAGCAGTTTAGAATGGACC-TAGAAGCATCTCATAGGA  1043
      |||| ||||||| |||||||||| ||||||| ||||||||||||||| ||
seq2  ATAATTTGAGCC-AGCAGTTTAG-ATGGACCTTAGAAGCATCTCATA-GA  1046

seq1  TAGAC-TATCAACCAATTTTATTA-CACAC-TTCTTTGTTTCT-AATTGT  1089
      ||||| |||||| | ||||||||| ||||| |||||||||||| ||||||
seq2  TAGACTTATCAAAC-ATTTTATTACCACACTTTCTTTGTTTCTAAATTGT  1095

seq1  GGATGTAT--CTTAGTTC  1105
      ||||||||   |||||||
seq2  GGATGTATTCTTTAGTTC  1113


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