BAC Information

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BAC

Clone NameB6Ng01-213M17
Chromosome18 (Build37)
Map Location 11,642,276 - 11,643,397
singlet/doubletsinglet
Overlap genenone
Upstream geneAbhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213M17.bB6Ng01-213M17.g
ACCGA031219GA031220
length1,1251,199
definitionB6Ng01-213M17.b B6Ng01-213M17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacattttggcctttattttccttatatggaaataaaattagta
atatagatagcattctgaggttagcatgtgggttctatgatgtataaata
catacataaataaaatgcttggcatggtttgggtatacagcaagtgttca
taaataatagctctgataagaattatgtagtgaaaggtgctgtggaagca
gagacggtggaattggtgttttcttacagagttccttcctttcagaatac
ctctgaagccagtgtctctgccttcctgagcaagcctgctcacacagcgt
ggcaatcctttgaaggacagctctgcactgctatgtggtcctttggggga
ctttcaggcactcctttcccagagcttctcaggtcctatgcctacatttc
ccaccttagttctggctatttctgaagttgtagaaaggggacaaattatt
gagtaaaatttactgtccctcttaatcttcataagtggacaaaaccaatc
taaaatgtgtatgactagaatgaaggagagagagagagaaaaaaaagaaa
caatgagagggtggcaaaaacaaaaaccaaaaaaccaaaaaaccaaccaa
ccaaccaaccaaccatccaaccacatccaagcaaccaacaaacccagaat
gtgaaagtgaagcctgcaggttagcagtttgcttagctgtatccagttct
aatcacagtggctcagagaagataaataagtgcctgggtcccatgttgtg
ctcctgggtctgctataactagattgcccagtattgggcctttgcttggc
tttgagttctctttgtgcggctactgtagtcctcatgcagcccttttaga
catgtgataaaatagataaaggactggttttccagttaaaaatggatttt
agatagcaacaagttactttttatattagcatgttcaaactatgtgcatg
tttatgctaaaagtactgctcacctgaaattcaaatataactagaccacc
tttatttatttacttttttgttcttttgagacaggcttctctctactagc
tctgggcttatcctaggaactcattcttgtagatcagcggtcctcgattt
cacagagagacccgtctgcctctgc
gaattctttgtttagctttcaaccccattttttaatacggttatttggtt
ttctggagtccaacttcttgagttctttatacatattggatattagcccc
atatcagatttaggattggtaaaaatcttttcccaatctgttggtggcct
ttttgtcttattgacagtggcctttgccttacggatgatttgcaattttc
tgaggtcccatttgtcaattctcgatcttgtagcacaagccattggtgtt
ctgttcaggaatttttctcctgtgcccatatgttgcgcgcgctcaactgg
ccaggaagaacgacgctgctacaggatccttctgcacacgtttattcagt
cctgtttcttctttctctatatttcccttgtttatatctcccttgtttat
atctcccttgtttatatctcccttgtttttatatctcccctgtttatatc
tcccttgtttatatctcccttgtttatatctcccccgaaccctgggcctc
tcactccttttatactctctctcatccacgcaccgcaggccatgccgcct
caccaggcacgcagcttcagctaatcagggcagcaggggcaaatctccac
caaattggattcacctgtatcctggtacacatgtgcagcactcaagatgt
ttgtgtcttatatgaggaagtcaggtgcaagtcatatgacttagctgcag
tccctggcgcctttgggactgccgccacacccgctcctaacacccatatc
ttcaaggctcttccctactttctcctctataagtttcagtgtctctggtt
ttatgtggagttccttgattcacttagacttgagctttgtacaggaaatg
agaatggatcaattcacattcttctacatgctaactgccagttgagccag
caccatttgttgaaaatgctgtcttttttccactggatggttttagctcc
cttgtcaaaatcgagtgaccatagctgtgtggattcattatgggtcttca
attctatcccatgatctacctgtctgtcatggtacagtacatgcagtttt
atcaacatgctctgtagtacaagctgagatcagcatgtgaattcacacca
gaggtctttatggttggaaatagcttttggcatacctgggcttgttattc
cagatgaattgcaatagcactttctcgaatctcgtagaaatgatgaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_11642276_11643397
seq2: B6Ng01-213M17.b_42_1166 (reverse)

seq1  GCAGAGGCAGGCGGG--TCTCTGTGAATTCGA-GACCGGCCTGATCTAC-  46
      |||||||||| ||||  |||||||||| |||| |||||  ||||||||| 
seq2  GCAGAGGCAGACGGGTCTCTCTGTGAAATCGAGGACCG--CTGATCTACA  48

seq1  AGAATGAGTT-CTAGGATA--GCCAGAGCTAAGTAGAGAG-AGCCTGTCT  92
      |||||||||| ||||||||   |||||||| ||||||||| |||||||||
seq2  AGAATGAGTTCCTAGGATAAGCCCAGAGCT-AGTAGAGAGAAGCCTGTCT  97

seq1  CAAAAGAACAAAAAAGTAAATAAATAAAGGTGGTCTAGTTATATTTGAAT  142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAAAAAAGTAAATAAATAAAGGTGGTCTAGTTATATTTGAAT  147

seq1  TTCAGGTGAGCAGTACTTTTAGCATAAACATGCACATAGTTTTGAACATG  192
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCAGGTGAGCAGTACTTTTAGCATAAACATGCACATAG-TTTGAACATG  196

seq1  CTAATATAAAAAAGTAACTTGTTGCTATCTAAAATCCATTTTTAACTGGA  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAT-AAAAAGTAACTTGTTGCTATCTAAAATCCATTTTTAACTGGA  245

seq1  AAACCAGTCCTTTATCTATTTTATCACATGTCTAAAAGGGCTGCATGAGG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTCCTTTATCTATTTTATCACATGTCTAAAAGGGCTGCATGAGG  295

seq1  ACTACAGTAGCCGCACAAAGAGAACTCAAAGCCAAGCAAAGGCCCAATAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGTAGCCGCACAAAGAGAACTCAAAGCCAAGCAAAGGCCCAATAC  345

seq1  TGGGCAATCTAGTTATAGCAGACCCAGGAGCACAACATGGGACCCAGGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATCTAGTTATAGCAGACCCAGGAGCACAACATGGGACCCAGGCA  395

seq1  CTTATTTATCTTCTCTGAGCCACTGTGATTAGAACTGGATACAGCTAAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATCTTCTCTGAGCCACTGTGATTAGAACTGGATACAGCTAAGC  445

seq1  AAACTGCTAACCTGCAGGCTTCACTTTCACATTCTGGGTTTGTTGGTTGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTAACCTGCAGGCTTCACTTTCACATTCTGGGTTTGTTGGTTGC  495

seq1  TTGGATGTGGTTGGATGGTTGGTTGGTTGGTTGGTTGGTTTTTTGGTTTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTGGTTGGATGGTTGGTTGGTTGGTTGGTTGGTTTTTTGGTTTT  545

seq1  TTGGTTTTTGTTTTTGCCACCCTCTCATTGTTTCTTTTTTTTCTCTCTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGTTTTTGCCACCCTCTCATTGTTTCTTTTTTTTCTCTCTCT  595

seq1  CTCTCCTTCATTCTAGTCATACACATTTTAGATTGGTTTTGTCCACTTAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCATTCTAGTCATACACATTTTAGATTGGTTTTGTCCACTTAT  645

seq1  GAAGATTAAGAGGGACAGTAAATTTTACTCAATAATTTGTCCCCTTTCTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAAGAGGGACAGTAAATTTTACTCAATAATTTGTCCCCTTTCTA  695

seq1  CAACTTCAGAAATAGCCAGAACTAAGGTGGGAAATGTAGGCATAGGACCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAGAAATAGCCAGAACTAAGGTGGGAAATGTAGGCATAGGACCT  745

seq1  GAGAAGCTCTGGGAAAGGAGTGCCTGAAAGTCCCCCAAAGGACCACATAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTCTGGGAAAGGAGTGCCTGAAAGTCCCCCAAAGGACCACATAG  795

seq1  CAGTGCAGAGCTGTCCTTCAAAGGATTGCCACGCTGTGTGAGCAGGCTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAGCTGTCCTTCAAAGGATTGCCACGCTGTGTGAGCAGGCTTG  845

seq1  CTCAGGAAGGCAGAGACACTGGCTTCAGAGGTATTCTGAAAGGAAGGAAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGGCAGAGACACTGGCTTCAGAGGTATTCTGAAAGGAAGGAAC  895

seq1  TCTGTAAGAAAACACCAATTCCACCGTCTCTGCTTCCACAGCACCTTTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGAAAACACCAATTCCACCGTCTCTGCTTCCACAGCACCTTTCA  945

seq1  CTACATAATTCTTATCAGAGCTATTATTTATGAACACTTGCTGTATACCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAATTCTTATCAGAGCTATTATTTATGAACACTTGCTGTATACCC  995

seq1  AAACCATGCCAAGCATTTTATTTATGTATGTATTTATACATCATAGAACC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATGCCAAGCATTTTATTTATGTATGTATTTATACATCATAGAACC  1045

seq1  CACATGCTAACCTCAGAATGCTATCTATATTACTAATTTTATTTCCATAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTAACCTCAGAATGCTATCTATATTACTAATTTTATTTCCATAT  1095

seq1  AAGGAAAATAAAGGCCAAAATGTAGAATTC  1122
      ||||||||||||||||||||||||||||||
seq2  AAGGAAAATAAAGGCCAAAATGTAGAATTC  1125