BAC Information

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BAC

Clone NameB6Ng01-214P18
Chromosome18 (Build37)
Map Location 47,466,285 - 47,629,557
singlet/doubletdoublet
Overlap geneSema6a, LOC628477, 9130209A04Rik
Upstream geneCcdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214P18.bB6Ng01-214P18.g
ACCGA032085GA032086
length1,2141,141
definitionB6Ng01-214P18.b B6Ng01-214P18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,466,285 - 47,467,461)(47,628,425 - 47,629,557)
sequence
gaattcattggtcatactgtattacataaagacagtgcccggtacccact
ggacccaatgtcaccctggcaccacacacttttgcaaaaagcctcacttc
ctttgaccagaccattacaggccatggtagctgcaatctcacaattataa
aactctggatttcaagaagtatgaacaactgcaagcaatttttctccttt
tcctttacagaggtttacagaggtcaaaaattgccatctttaacaggttt
tgtttgtttgttttggccaatcaagaatctctcagaaatgtgataccatg
gtcagtagtgaagaatgcggataactgataatgatctagactcccagctt
caatataagtcagaacacatgccatactatgacccagaggcactatgacg
gtatcatacctctgtctctagcatgtgagacacacacacacacacacacc
acacacaactgaccccattttcttatttccaatagaaccccttacttagt
agagttgagatgttgacctcgtttgtcacttcacagtgacttcagaccta
aatggaaattatataatctattttgtattaaaatataattatgttgtcat
cccttttcctccttcaatcacctcccatgcccattattctatatcaaact
ctcttttctttgacacacacacacagacacacacacacacacacacacag
acacacacacacacacacagagacacacacacacacacaacctgctgagt
ctgatttgtgttacttgtattatatgatctgaaaggccgaccactccata
tgaggaggctcatcctggagaaggccaatcctcaccttctcatcaaattg
ttagctgcctatgggttcttcacctgggggtacacagtctacttttttaa
aagaaacaacatttccgattctgtgacgagaaatcaagaactggccttct
tggaacatcattgcttgatttttaaaaaagagaaatcgtatcctctggtg
catttggttttgcaaacaatactgctctgcttcagctggtattaatgtta
aaggcagctttttatgtgggagcaggatccttctacagctcaaaaaaaaa
agaagaaaaagtcccaagggagctgctggaataacaggtgaaacacaggc
ctcacgcttaccgtaaaatacacacatccactctctcaagagagaattca
aataagccaattga
gaattcatcggtactcaagaatcctggaatctatctcatcaaaacaggag
gaaacgcactctgtcttccaggagttagtatgtgggctgcatttccattc
caggtgaccaggaaggagagctttatttacaaagttaaaattggagccgt
gattaaataattactgccagaaaactaaaaataaactttactcataatta
ctaccaaaataatacaggaaaatgctgggactttcttttcaagaacttcc
tggctatgcaaatgccaaagtgtcatttggcaacagttggacaaacaaga
aagttttgtgtcacccaacacaaagcaacaggctacttccagatatgttt
cagagcaaagggaggggcctcagctccattgtgaacaagagtcctgcccc
caccttccactttcatttttatttatttgtttatctgtttgtttgtttgt
ttatgctttttataaaaactcacttgtcaattctctgggagactgaactg
aaagccttctcaaggactggatccgcatctggccagaaggcaaaacaact
gtgccggcaaatcagcgccttctcagaaatgagtttggccaatgaagcaa
gcagtctagaagttttttgatgttcaacaacatctgtcaccaaccgggac
ttttccaagcactccaaagtgtctattggctaaatcactcccatgtcacc
aatcagtctaggctaactttaccaaagtgagactcttctgtagacacaaa
caccgagtacatatctcccagcagaatggcctgcctgccttggaatcacc
ttgaagccaatttcagattgtattccagggcaagcaacataaggtaactt
cagtgatggttaaaaaaagagagagagagcgataacaataaaatctgttt
catgaaggtggctcagagaactgaaatagatgaagacacagaaggcactt
gccttcagcactgccttcatcaatctagccatagctccttgccttctcct
cattgtaatattcatcactactttgagcctacaaagtcagattctgaaat
cagactgtgccactgccacagaatgcattgaaaaattgtgttttatacat
tgaaggggataaattatttataaagcacattttatttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47466285_47467461
seq2: B6Ng01-214P18.b_48_1261

seq1  GAATTCATTGGTCATACTGTATTACATAAAGACAGTGCCCGGTACCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTCATACTGTATTACATAAAGACAGTGCCCGGTACCCACT  50

seq1  GGACCCAATGTCACCCTGGCACCACACACTTTTGCAAAAAGCCTCACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAATGTCACCCTGGCACCACACACTTTTGCAAAAAGCCTCACTTC  100

seq1  CTTTGACCAGACCATTACAGGCCATGGTAGCTGCAATCTCACAATTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCAGACCATTACAGGCCATGGTAGCTGCAATCTCACAATTATAA  150

seq1  AACTCTGGATTTCAAGAAGTATGAACAACTGCAAGCAATTTTTCTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGATTTCAAGAAGTATGAACAACTGCAAGCAATTTTTCTCCTTT  200

seq1  TCCTTTACAGAGGTTTACAGAGGTCAAAAATTGCCATCTTTAACAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACAGAGGTTTACAGAGGTCAAAAATTGCCATCTTTAACAGGTTT  250

seq1  TGTTTGTTTGTTTTGGCCAATCAAGAATCTCTCAGAAATGTGATACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTGGCCAATCAAGAATCTCTCAGAAATGTGATACCATG  300

seq1  GTCAGTAGTGAAGAATGCGGATAACTGATAATGATCTAGACTCCCAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGTGAAGAATGCGGATAACTGATAATGATCTAGACTCCCAGCTT  350

seq1  CAATATAAGTCAGAACACATGCCATACTATGACCCAGAGGCACTATGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAGTCAGAACACATGCCATACTATGACCCAGAGGCACTATGACG  400

seq1  GTATCATACCTCTGTCTCTAGCATGTGAGACACACACACACACACACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATACCTCTGTCTCTAGCATGTGAGACACACACACACACACACACC  450

seq1  ACACACAACTGACCCCATTTTCTTATTTCCAATAGAACCCCTTACTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAACTGACCCCATTTTCTTATTTCCAATAGAACCCCTTACTTAGT  500

seq1  AGAGTTGAGATGTTGACCTCGTTTGTCACTTCACAGTGACTTCAGACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGATGTTGACCTCGTTTGTCACTTCACAGTGACTTCAGACCTA  550

seq1  AATGGAAATTATATAATCTATTTTGTATTAAAATATAATTATGTTGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAATTATATAATCTATTTTGTATTAAAATATAATTATGTTGTCAT  600

seq1  CCCTTTTCCTCCTTCAATCACCTCCCATGCCCATTATTCTATATCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCTCCTTCAATCACCTCCCATGCCCATTATTCTATATCAAACT  650

seq1  CTCTTTTCTTTGACACACACACACAGACACACACACACACACACACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTTTGACACACACACACAGACACACACACACACACACACACAG  700

seq1  ACACACACACACACACACAGAGACACACACACACACACAACCTGCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAGAGACACACACACACACACAACCTGCTGAGT  750

seq1  CTGATTTGTGTTACTTGTATTATATGATCTG-AAGGCCGACCACTCCATA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATTTGTGTTACTTGTATTATATGATCTGAAAGGCCGACCACTCCATA  800

seq1  TGAGGAGGCTCATCCTGGAGAAGGCCAATCCTCACCTTCTCATC-AATTG  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAGGAGGCTCATCCTGGAGAAGGCCAATCCTCACCTTCTCATCAAATTG  850

seq1  TTAGCTGCCTAT-GGTTCTTCACCTGGGGGTACACAGTCTAC-TTTTTAA  896
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TTAGCTGCCTATGGGTTCTTCACCTGGGGGTACACAGTCTACTTTTTTAA  900

seq1  AAG-AACAACATTTCCGATTCTGTGACGAG-AATC-AGAACTGGCC-TCT  942
      ||| |||||||||||||||||||||||||| |||| |||||||||| |||
seq2  AAGAAACAACATTTCCGATTCTGTGACGAGAAATCAAGAACTGGCCTTCT  950

seq1  TGGAACATCATTGC-TGATTTTTAAAAAAGAG-AATCGTAT-CTCT-GTG  988
      |||||||||||||| ||||||||||||||||| |||||||| |||| |||
seq2  TGGAACATCATTGCTTGATTTTTAAAAAAGAGAAATCGTATCCTCTGGTG  1000

seq1  CA-TTGGTTTTGC-AACAATACTGCTCTGC-TCAGCT-GTATT-ATGTT-  1032
      || |||||||||| |||||||||||||||| |||||| ||||| ||||| 
seq2  CATTTGGTTTTGCAAACAATACTGCTCTGCTTCAGCTGGTATTAATGTTA  1050

seq1  AAGGCAGC-TTTTATGT-GGAGCAGGATCCTTCTACAGCTCAAAAAAAAA  1080
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTTTTTATGTGGGAGCAGGATCCTTCTACAGCTCAAAAAAAAA  1100

seq1  AGA--GAAAAGTCCC-AGGGAGCTGCTGGA--TACA-GTG-AACACA-GC  1122
      |||   ||||||||| ||||||||||||||   ||| ||| |||||| ||
seq2  AGAAGAAAAAGTCCCAAGGGAGCTGCTGGAATAACAGGTGAAACACAGGC  1150

seq1  CTCACGC-TACAGT-AAATAC-CACAT---CACTCTCAGGAG-GATTTCA  1165
      ||||||| ||| || |||||| |||||   | |||||| ||| || ||||
seq2  CTCACGCTTACCGTAAAATACACACATCCACTCTCTCAAGAGAGAATTCA  1200

seq1  AATAAGC--ATTGA  1177
      |||||||  |||||
seq2  AATAAGCCAATTGA  1214

seq1: chr18_47628425_47629557
seq2: B6Ng01-214P18.g_65_1205 (reverse)

seq1  CCTCAA--TAAATGTGCTTTAT-AATA--TTATCCCCTTTCAATGTAT-A  44
      ||||||   ||||||||||||| ||||  |||||||| |||||||||| |
seq2  CCTCAAATAAAATGTGCTTTATAAATAATTTATCCCC-TTCAATGTATAA  49

seq1  AACAC-ATTTTTC-ATGCTATCTGTGGCAGT-GCACAGTCTGATTTCAGA  91
      ||||| ||||||| ||||  ||||||||||| ||||||||||||||||| 
seq2  AACACAATTTTTCAATGCATTCTGTGGCAGTGGCACAGTCTGATTTCAG-  98

seq1  AATCTGACTTTGTAGGCTCAAAGTAGTGATG-ATATTAACAATGAGGAGA  140
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  AATCTGACTTTGTAGGCTCAAAGTAGTGATGAATATT-ACAATGAGGAGA  147

seq1  AGGCAGGGAGCTATGGCTAGATTGATGGAGGCAGTGCTGAAGGCAAGTGC  190
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGCAAGGAGCTATGGCTAGATTGATGAAGGCAGTGCTGAAGGCAAGTGC  197

seq1  CTTCTGTGTCTTCATCTATTTCAGTTCTCTGAGCCACC-TCATGAAACAG  239
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTCTGTGTCTTCATCTATTTCAGTTCTCTGAGCCACCTTCATGAAACAG  247

seq1  ATTTTATTGTTATCGCTCTCTCTCTCTTTTTTTAACCATCACTGAAGTTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTTATCGCTCTCTCTCTCTTTTTTTAACCATCACTGAAGTTA  297

seq1  CCTTATGTTGCTTGCCCTGGAATACAATCTGAAATTGGCTTCAAGGTGAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTTGCTTGCCCTGGAATACAATCTGAAATTGGCTTCAAGGTGAT  347

seq1  TCCAAGGCAGGCAGGCCATTCTGCTGGGAGATATGTACTCGGTGTTTGTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCAGGCAGGCCATTCTGCTGGGAGATATGTACTCGGTGTTTGTG  397

seq1  TCTACAGAAGAGTCTCACTTTGGTAAAGTTAGCCTAGACTGATTGGTGAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAGAGTCTCACTTTGGTAAAGTTAGCCTAGACTGATTGGTGAC  447

seq1  ATGGGAGTGATTTAGCCAATAGACACTTTGGAGTGCTTGGAAAAGTCCCG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTGATTTAGCCAATAGACACTTTGGAGTGCTTGGAAAAGTCCCG  497

seq1  GTTGGTGACAGATGTTGTTGAACATCAAAAAACTTCTAGACTGCTTGCTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGACAGATGTTGTTGAACATCAAAAAACTTCTAGACTGCTTGCTT  547

seq1  CATTGGCCAAACTCATTTCTGAGAAGGCGCTGATTTGCCGGCACAGTTGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCAAACTCATTTCTGAGAAGGCGCTGATTTGCCGGCACAGTTGT  597

seq1  TTTGCCTTCTGGCCAGATGCGGATCCAGTCCTTGAGAAGGCTTTCAGTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTCTGGCCAGATGCGGATCCAGTCCTTGAGAAGGCTTTCAGTTC  647

seq1  AGTCTCCCAGAGAATTGACAAGTGAGTTTTTATAAAAAGCATAAACAAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCAGAGAATTGACAAGTGAGTTTTTATAAAAAGCATAAACAAAC  697

seq1  AAACAAACAGATAAACAAATAAATAAAAATGAAAGTGGAAGGTGGGGGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGATAAACAAATAAATAAAAATGAAAGTGGAAGGTGGGGGCA  747

seq1  GGACTCTTGTTCACAATGGAGCTGAGGCCCCTCCCTTTGCTCTGAAACAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTGTTCACAATGGAGCTGAGGCCCCTCCCTTTGCTCTGAAACAT  797

seq1  ATCTGGAAGTAGCCTGTTGCTTTGTGTTGGGTGACACAAAACTTTCTTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAGTAGCCTGTTGCTTTGTGTTGGGTGACACAAAACTTTCTTGT  847

seq1  TTGTCCAACTGTTGCCAAATGACACTTTGGCATTTGCATAGCCAGGAAGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAACTGTTGCCAAATGACACTTTGGCATTTGCATAGCCAGGAAGT  897

seq1  TCTTGAAAAGAAAGTCCCAGCATTTTCCTGTATTATTTTGGTAGTAATTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAAGAAAGTCCCAGCATTTTCCTGTATTATTTTGGTAGTAATTA  947

seq1  TGAGTAAAGTTTATTTTTAGTTTTCTGGCAGTAATTATTTAATCACGGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAGTTTATTTTTAGTTTTCTGGCAGTAATTATTTAATCACGGCT  997

seq1  CCAATTTTAACTTTGTAAATAAAGCTCTCCTTCCTGGTCACCTGGAATGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTAACTTTGTAAATAAAGCTCTCCTTCCTGGTCACCTGGAATGG  1047

seq1  AAATGCAGCCCACATACTAACTCCTGGAAGACAGAGTGCGTTTCCTCCTG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGCCCACATACTAACTCCTGGAAGACAGAGTGCGTTTCCTCCTG  1097

seq1  TTTTGATGAGATAGATTCCAGGATTCTTGAGTACCGATGAATTC  1133
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGAGATAGATTCCAGGATTCTTGAGTACCGATGAATTC  1141